Wall clock time and date at job start Tue Mar 31 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31525 * 119.96613 * 2 1 4 4 C 1.33252 * 120.97642 * 179.97438 * 3 2 1 5 5 C 1.41158 * 132.24332 * 180.02562 * 4 3 2 6 6 C 1.40214 * 133.45730 * 359.95181 * 5 4 3 7 7 C 1.36181 * 119.78504 * 179.97438 * 6 5 4 8 8 C 1.39420 * 120.89245 * 0.04843 * 7 6 5 9 9 C 1.35957 * 121.02917 * 359.97386 * 8 7 6 10 10 C 1.40999 * 119.79086 * 0.02562 * 9 8 7 11 11 N 1.32927 * 133.00290 * 180.02562 * 10 9 8 12 12 N 1.36580 * 120.74155 * 0.02562 * 4 3 2 13 13 C 1.36316 * 119.70706 * 359.75185 * 12 4 3 14 14 C 1.50700 * 120.39214 * 180.27633 * 13 12 4 15 15 C 1.35807 * 119.21827 * 0.51375 * 13 12 4 16 16 C 1.50701 * 120.35735 * 179.73308 * 15 13 12 17 17 C 1.52998 * 109.47153 * 269.72455 * 16 15 13 18 18 C 1.50701 * 109.47153 * 180.02562 * 17 16 15 19 19 O 1.21275 * 119.99943 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99964 * 180.02562 * 18 17 16 21 21 C 1.46498 * 119.99973 * 179.97438 * 20 18 17 22 22 H 1.09007 * 109.46864 * 325.00310 * 21 20 18 23 23 C 1.53000 * 109.46908 * 85.00105 * 21 20 18 24 24 C 1.50693 * 109.47398 * 205.00064 * 21 20 18 25 25 H 1.08005 * 120.00291 * 354.36544 * 24 21 20 26 26 C 1.37881 * 120.00259 * 174.36876 * 24 21 20 27 27 N 1.31514 * 120.00212 * 156.61898 * 26 24 21 28 28 Si 1.86795 * 119.99775 * 336.88788 * 26 24 21 29 29 H 1.48501 * 109.47165 * 179.72704 * 28 26 24 30 30 H 1.48500 * 109.47318 * 299.72681 * 28 26 24 31 31 H 1.48500 * 109.47076 * 59.72783 * 28 26 24 32 32 H 1.08997 * 109.47193 * 269.97937 * 1 2 3 33 33 H 1.09006 * 109.47104 * 29.97448 * 1 2 3 34 34 H 1.08998 * 109.47061 * 149.96834 * 1 2 3 35 35 H 1.08007 * 120.10734 * 359.97438 * 6 5 4 36 36 H 1.08006 * 119.55626 * 180.02562 * 7 6 5 37 37 H 1.07999 * 119.48894 * 179.97438 * 8 7 6 38 38 H 1.08005 * 120.10402 * 180.02562 * 9 8 7 39 39 H 1.09004 * 109.47043 * 270.24330 * 14 13 12 40 40 H 1.09002 * 109.47169 * 30.24423 * 14 13 12 41 41 H 1.09004 * 109.47018 * 150.24302 * 14 13 12 42 42 H 1.09001 * 109.46569 * 149.73003 * 16 15 13 43 43 H 1.08991 * 109.46922 * 29.72794 * 16 15 13 44 44 H 1.09007 * 109.46749 * 60.00380 * 17 16 15 45 45 H 1.08994 * 109.47375 * 300.00529 * 17 16 15 46 46 H 0.96999 * 120.00353 * 0.02562 * 20 18 17 47 47 H 1.08994 * 109.47507 * 53.10469 * 23 21 20 48 48 H 1.09003 * 109.46967 * 173.10985 * 23 21 20 49 49 H 1.09007 * 109.46955 * 293.10213 * 23 21 20 50 50 H 0.97003 * 119.99433 * 355.20223 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1640 1.1394 0.0000 4 6 3.4963 1.1629 0.0005 5 6 4.4267 2.2245 0.0011 6 6 4.2970 3.6206 0.0005 7 6 5.4112 4.4036 0.0019 8 6 6.6847 3.8362 0.0029 9 6 6.8508 2.4868 0.0031 10 6 5.7219 1.6420 0.0016 11 7 5.5784 0.3205 0.0018 12 7 4.2150 0.0015 0.0005 13 6 3.5637 -1.1960 0.0051 14 6 4.3414 -2.4868 0.0115 15 6 2.2058 -1.2121 -0.0010 16 6 1.4596 -2.5214 -0.0021 17 6 1.2076 -2.9635 -1.4450 18 6 0.4609 -4.2725 -1.4462 19 8 0.1595 -4.7996 -0.3964 20 7 0.1280 -4.8573 -2.6139 21 6 -0.5974 -6.1301 -2.6150 22 1 -0.2658 -6.7381 -1.7732 23 6 -2.0985 -5.8616 -2.4902 24 6 -0.3237 -6.8632 -3.9028 25 1 0.2508 -6.3871 -4.6837 26 6 -0.8066 -8.1419 -4.0844 27 7 -0.9864 -8.6105 -5.3000 28 14 -1.2127 -9.2058 -2.6037 29 1 -1.7171 -10.5242 -3.0649 30 1 0.0106 -9.4026 -1.7852 31 1 -2.2544 -8.5365 -1.7840 32 1 -0.3633 -0.0004 1.0276 33 1 -0.3633 0.8903 -0.5135 34 1 -0.3633 -0.8897 -0.5143 35 1 3.3165 4.0736 -0.0011 36 1 5.3070 5.4786 0.0019 37 1 7.5529 4.4786 0.0036 38 1 7.8444 2.0633 0.0043 39 1 4.5336 -2.8002 -1.0147 40 1 5.2889 -2.3376 0.5294 41 1 3.7642 -3.2562 0.5244 42 1 0.5063 -2.3966 0.5114 43 1 2.0527 -3.2780 0.5114 44 1 2.1610 -3.0882 -1.9586 45 1 0.6146 -2.2068 -1.9586 46 1 0.3693 -4.4359 -3.4536 47 1 -2.4067 -5.1553 -3.2609 48 1 -2.6462 -6.7960 -2.6137 49 1 -2.3121 -5.4426 -1.5068 50 1 -0.8459 -8.0343 -6.0676 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058419791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:12 Heat of formation + Delta-G solvation = 80.935422 kcal Electronic energy + Delta-G solvation = -31886.932099 eV Core-core repulsion = 27687.484280 eV Total energy + Delta-G solvation = -4199.447819 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.88404 -39.99072 -39.13403 -37.21513 -35.90773 -35.03874 -33.68981 -32.56094 -32.04619 -30.69404 -30.30447 -29.54999 -28.30340 -27.71557 -25.69705 -24.89340 -23.42513 -22.60332 -21.81434 -21.28957 -20.68859 -19.65011 -18.81352 -18.02474 -17.78881 -17.29186 -16.76750 -16.41476 -15.61868 -15.28328 -15.09323 -14.94690 -14.68181 -14.32532 -14.07239 -13.98513 -13.86361 -13.77885 -13.56089 -13.18322 -13.05032 -12.88487 -12.67387 -12.55515 -12.49031 -12.37548 -12.19520 -12.16306 -11.99453 -11.89160 -11.65818 -11.45061 -11.22837 -10.88250 -10.55912 -10.47522 -10.18776 -10.12843 -10.10407 -9.90849 -9.37058 -9.21790 -8.84065 -8.36524 -8.28120 -7.59775 -6.66164 -4.27638 -0.12114 0.08161 1.34324 1.60511 1.70902 2.88158 3.09118 3.25803 3.34872 3.40397 3.47972 3.55566 3.61178 3.77442 3.78579 4.26559 4.34793 4.38304 4.57491 4.66801 4.72261 4.81209 4.82891 4.88948 5.01054 5.04089 5.05153 5.09355 5.15379 5.16006 5.28311 5.33953 5.34806 5.39167 5.50805 5.59138 5.67025 5.70468 5.81552 5.96883 6.05207 6.13597 6.27214 6.31409 6.31566 6.47362 6.57743 6.60292 6.88480 7.17556 7.20527 7.20647 7.30102 7.59062 8.17720 8.36959 8.61966 8.85880 9.38651 10.72111 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.021008 B = 0.001801 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.518847 B =15544.552673 C =16005.848142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.210 3.790 3 N -0.462 5.462 4 C 0.291 3.709 5 C -0.195 4.195 6 C -0.017 4.017 7 C -0.178 4.178 8 C -0.059 4.059 9 C -0.127 4.127 10 C 0.141 3.859 11 N -0.342 5.342 12 N -0.261 5.261 13 C 0.186 3.814 14 C -0.124 4.124 15 C -0.161 4.161 16 C -0.054 4.054 17 C -0.141 4.141 18 C 0.502 3.498 19 O -0.557 6.557 20 N -0.701 5.701 21 C 0.243 3.757 22 H 0.041 0.959 23 C -0.155 4.155 24 C -0.627 4.627 25 H 0.062 0.938 26 C 0.045 3.955 27 N -0.889 5.889 28 Si 1.034 2.966 29 H -0.283 1.283 30 H -0.281 1.281 31 H -0.274 1.274 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.393 0.607 47 H 0.043 0.957 48 H 0.058 0.942 49 H 0.029 0.971 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.480 23.248 11.220 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.051 3.949 3 N -0.175 5.175 4 C 0.052 3.948 5 C -0.205 4.205 6 C -0.037 4.037 7 C -0.197 4.197 8 C -0.081 4.081 9 C -0.149 4.149 10 C -0.002 4.002 11 N -0.174 5.174 12 N -0.026 5.026 13 C 0.067 3.933 14 C -0.181 4.181 15 C -0.167 4.167 16 C -0.093 4.093 17 C -0.181 4.181 18 C 0.287 3.713 19 O -0.437 6.437 20 N -0.349 5.349 21 C 0.139 3.861 22 H 0.059 0.941 23 C -0.214 4.214 24 C -0.664 4.664 25 H 0.080 0.920 26 C -0.163 4.163 27 N -0.520 5.520 28 Si 0.861 3.139 29 H -0.208 1.208 30 H -0.207 1.207 31 H -0.200 1.200 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.226 0.774 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.048 0.952 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.197 21.118 12.359 26.140 hybrid contribution 0.713 1.832 -1.066 2.236 sum 9.910 22.950 11.293 27.431 Atomic orbital electron populations 1.20958 0.86374 1.05078 1.04612 1.21916 0.98080 0.86522 0.88422 1.67856 1.03843 1.29002 1.16758 1.20459 0.87781 0.86917 0.99643 1.17675 0.90342 0.93378 1.19146 1.20213 0.99222 0.90022 0.94215 1.20595 0.92008 0.99780 1.07362 1.20765 0.97607 0.94168 0.95536 1.19891 0.95790 0.91993 1.07208 1.19906 0.94234 0.90759 0.95334 1.78464 0.86104 1.13097 1.39709 1.47095 1.08305 1.05659 1.41504 1.20699 0.91478 0.86378 0.94743 1.21127 1.00885 0.90830 1.05239 1.20378 0.91169 0.98662 1.06452 1.20330 1.01206 0.90628 0.97122 1.21700 1.02082 0.96734 0.97613 1.20363 0.80058 0.86190 0.84725 1.90660 1.56134 1.65484 1.31383 1.46328 1.56654 1.24787 1.07104 1.18993 0.87782 0.80716 0.98576 0.94148 1.22421 0.99231 1.01240 0.98515 1.21999 1.40461 1.02931 1.01007 0.92013 1.25647 0.92826 0.96236 1.01557 1.70873 1.41563 1.40666 0.98936 0.84175 0.77619 0.76677 0.75436 1.20836 1.20668 1.19962 0.88685 0.89272 0.88849 0.85661 0.85674 0.85318 0.85252 0.88366 0.89089 0.87792 0.88357 0.88685 0.89104 0.88972 0.77374 0.93824 0.92278 0.95185 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.41 36.01 0.34 -0.45 16 2 C 0.21 2.10 6.83 -82.10 -0.56 1.54 16 3 N -0.46 -5.65 10.38 -8.19 -0.09 -5.74 16 4 C 0.29 3.95 7.96 -155.82 -1.24 2.71 16 5 C -0.20 -2.56 6.18 -106.60 -0.66 -3.22 16 6 C -0.02 -0.17 10.06 -39.58 -0.40 -0.57 16 7 C -0.18 -1.52 9.96 -39.88 -0.40 -1.91 16 8 C -0.06 -0.49 9.94 -39.96 -0.40 -0.89 16 9 C -0.13 -1.31 10.08 -39.35 -0.40 -1.71 16 10 C 0.14 1.87 7.26 -84.90 -0.62 1.25 16 11 N -0.34 -4.85 12.46 32.23 0.40 -4.45 16 12 N -0.26 -3.47 3.85 -8.19 -0.03 -3.50 16 13 C 0.19 2.02 6.85 -81.47 -0.56 1.46 16 14 C -0.12 -1.08 9.66 36.01 0.35 -0.73 16 15 C -0.16 -1.58 5.11 -104.87 -0.54 -2.11 16 16 C -0.05 -0.51 3.55 -27.88 -0.10 -0.61 16 17 C -0.14 -1.49 5.56 -27.88 -0.16 -1.64 16 18 C 0.50 8.06 7.79 -10.98 -0.09 7.97 16 19 O -0.56 -10.83 15.64 5.56 0.09 -10.74 16 20 N -0.70 -12.76 5.07 -54.94 -0.28 -13.04 16 21 C 0.24 5.50 2.16 -69.09 -0.15 5.35 16 22 H 0.04 1.00 6.15 -51.93 -0.32 0.68 16 23 C -0.16 -3.33 9.20 37.16 0.34 -2.98 16 24 C -0.63 -16.25 8.95 -34.44 -0.31 -16.56 16 25 H 0.06 1.68 7.96 -52.48 -0.42 1.26 16 26 C 0.05 1.23 5.19 -17.82 -0.09 1.14 16 27 N -0.89 -25.65 13.70 55.43 0.76 -24.89 16 28 Si 1.03 24.21 26.44 -169.99 -4.50 19.72 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 30 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 31 H -0.27 -6.03 6.14 56.52 0.35 -5.69 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.59 5.97 -51.93 -0.31 0.28 16 35 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 36 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 41 H 0.10 0.76 5.96 -51.93 -0.31 0.45 16 42 H 0.10 0.90 6.73 -51.93 -0.35 0.56 16 43 H 0.09 0.91 5.91 -51.93 -0.31 0.61 16 44 H 0.09 0.86 8.14 -51.92 -0.42 0.43 16 45 H 0.09 0.81 7.45 -51.93 -0.39 0.42 16 46 H 0.39 6.34 8.52 -40.82 -0.35 5.99 16 47 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.06 1.32 5.47 -51.93 -0.28 1.03 16 49 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 50 H 0.27 7.73 8.73 -40.82 -0.36 7.37 16 LS Contribution 407.64 15.07 6.14 6.14 Total: -1.00 -33.68 407.64 -10.01 -43.69 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.89 Total: 4.77 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -5.62 Total: -11.95 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.77 Total: -51.62 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -4.50 Total: 19.72 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.68 -10.01 -43.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058419791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.621 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds