Wall clock time and date at job start Tue Mar 31 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48495 * 109.47036 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47281 * 300.00372 * 3 2 1 6 6 H 1.48496 * 109.46711 * 60.00603 * 3 2 1 7 7 C 1.38955 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99540 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99609 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99947 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99634 * 180.02562 * 10 9 7 13 13 S 1.81401 * 109.47094 * 180.02562 * 12 10 9 14 14 O 1.42106 * 110.54005 * 72.61363 * 13 12 10 15 15 O 1.42088 * 110.54283 * 295.86226 * 13 12 10 16 16 N 1.65605 * 104.45122 * 184.23576 * 13 12 10 17 17 C 1.39997 * 119.99757 * 63.93674 * 16 13 12 18 18 C 1.38862 * 119.99911 * 254.67916 * 17 16 13 19 19 C 1.38094 * 119.99811 * 179.81211 * 18 17 16 20 20 C 1.38858 * 120.00195 * 0.42319 * 19 18 17 21 21 N 1.39997 * 120.00187 * 179.81210 * 20 19 18 22 22 C 1.46854 * 111.00108 * 124.22974 * 21 20 19 23 23 C 1.53031 * 109.51892 * 174.15829 * 22 21 20 24 24 C 1.53122 * 109.28107 * 59.18340 * 23 22 21 25 25 C 1.53120 * 109.15897 * 302.33918 * 24 23 22 26 26 C 1.46844 * 110.99906 * 0.02562 * 21 20 19 27 27 C 1.38867 * 119.99673 * 359.82893 * 20 19 18 28 28 C 1.38082 * 120.00102 * 359.95757 * 27 20 19 29 29 H 0.97002 * 119.99964 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99942 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47443 * 60.00008 * 12 10 9 32 32 H 1.09007 * 109.47259 * 300.00413 * 12 10 9 33 33 H 0.96995 * 120.00089 * 244.21556 * 16 13 12 34 34 H 1.07999 * 120.00261 * 0.02562 * 18 17 16 35 35 H 1.08004 * 120.00029 * 180.23188 * 19 18 17 36 36 H 1.08991 * 109.45958 * 294.17553 * 22 21 20 37 37 H 1.08999 * 109.45932 * 54.14726 * 22 21 20 38 38 H 1.08998 * 109.51014 * 299.23389 * 23 22 21 39 39 H 1.09004 * 109.50182 * 179.12038 * 23 22 21 40 40 H 1.08998 * 109.52346 * 182.43411 * 24 23 22 41 41 H 1.08993 * 109.52350 * 62.24672 * 24 23 22 42 42 H 1.08997 * 109.50279 * 297.71802 * 25 24 23 43 43 H 1.08995 * 109.50607 * 177.59411 * 25 24 23 44 44 H 1.08990 * 109.46572 * 305.85496 * 26 21 20 45 45 H 1.09001 * 109.46182 * 65.82778 * 26 21 20 46 46 H 1.07995 * 119.99743 * 179.97438 * 27 20 19 47 47 H 1.07998 * 120.00185 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 16 2.4225 -6.2417 -0.0002 14 8 3.0478 -6.3623 1.2702 15 8 3.1886 -6.2436 -1.1969 16 7 1.4756 -7.5951 -0.1194 17 6 0.7014 -7.8089 -1.2660 18 6 -0.6726 -7.6128 -1.2225 19 6 -1.4358 -7.8199 -2.3547 20 6 -0.8304 -8.2328 -3.5342 21 7 -1.6046 -8.4466 -4.6808 22 6 -1.1122 -7.6414 -5.8060 23 6 -1.8865 -8.0076 -7.0742 24 6 -3.3782 -7.7457 -6.8492 25 6 -3.8548 -8.5588 -5.6424 26 6 -3.0235 -8.1766 -4.4156 27 6 0.5430 -8.4339 -3.5762 28 6 1.3067 -8.2225 -2.4454 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6174 -4.9205 -0.8914 32 1 0.6167 -4.9208 0.8886 33 1 1.4543 -8.2376 0.6069 34 1 -1.1440 -7.2950 -0.3043 35 1 -2.5040 -7.6638 -2.3219 36 1 -1.2555 -6.5837 -5.5856 37 1 -0.0514 -7.8403 -5.9579 38 1 -1.7325 -9.0622 -7.3029 39 1 -1.5315 -7.3988 -7.9057 40 1 -3.9384 -8.0458 -7.7348 41 1 -3.5371 -6.6843 -6.6590 42 1 -3.7318 -9.6220 -5.8485 43 1 -4.9061 -8.3439 -5.4510 44 1 -3.3508 -8.7640 -3.5579 45 1 -3.1576 -7.1162 -4.2020 46 1 1.0138 -8.7554 -4.4934 47 1 2.3747 -8.3793 -2.4779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060336273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:06 Heat of formation + Delta-G solvation = -77.482930 kcal Electronic energy + Delta-G solvation = -30947.379802 eV Core-core repulsion = 26642.954643 eV Total energy + Delta-G solvation = -4304.425159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.64512 -38.54730 -38.39790 -36.70609 -35.60501 -35.29191 -34.23486 -32.90363 -31.91813 -31.55273 -30.66862 -29.66940 -28.02898 -24.86849 -24.70267 -24.21614 -21.99321 -21.67449 -20.21940 -20.04618 -19.10358 -18.20940 -18.05076 -17.57356 -17.24980 -16.10102 -15.88094 -15.65236 -15.35506 -15.26904 -14.98701 -14.63143 -14.44943 -14.28707 -14.16177 -13.97668 -13.88683 -13.70334 -13.56830 -12.90061 -12.72218 -12.62577 -12.41616 -12.11368 -11.75299 -11.73873 -11.71938 -11.68185 -11.60652 -11.52274 -11.18574 -11.17707 -10.85099 -10.81557 -10.70564 -10.44279 -10.34286 -10.01214 -9.74352 -9.73368 -9.12579 -8.91653 -8.19923 -7.98935 -6.60088 -4.01539 0.39785 1.12715 1.22767 2.97040 3.05158 3.19757 3.27777 3.28341 3.56219 3.61561 3.94237 4.12806 4.35821 4.41495 4.53743 4.54344 4.60656 4.70617 4.77254 4.81524 4.97495 5.03127 5.07020 5.14306 5.19428 5.23206 5.26550 5.33264 5.41116 5.45142 5.45892 5.51890 5.53098 5.65831 5.71553 5.78747 5.86948 5.95286 5.96719 6.04452 6.14872 6.35434 6.50534 6.73067 6.90750 7.13281 7.40383 7.81640 8.31544 8.94729 9.26724 9.74293 10.56650 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.008866 B = 0.002672 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.279046 B =10477.978565 C =12684.247900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.306 4.306 8 H 0.110 0.890 9 N -0.536 5.536 10 C 0.454 3.546 11 O -0.593 6.593 12 C -0.647 4.647 13 S 2.645 3.355 14 O -0.949 6.949 15 O -0.936 6.936 16 N -1.072 6.072 17 C 0.097 3.903 18 C -0.091 4.091 19 C -0.166 4.166 20 C 0.116 3.884 21 N -0.488 5.488 22 C 0.054 3.946 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.118 4.118 26 C 0.048 3.952 27 C -0.133 4.133 28 C -0.075 4.075 29 H 0.275 0.725 30 H 0.396 0.604 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.420 0.580 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.048 0.952 46 H 0.131 0.869 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.638 -18.802 -10.159 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.435 4.435 8 H 0.128 0.872 9 N -0.170 5.170 10 C 0.237 3.763 11 O -0.481 6.481 12 C -0.778 4.778 13 S 2.736 3.264 14 O -0.939 6.939 15 O -0.926 6.926 16 N -0.827 5.827 17 C 0.002 3.998 18 C -0.113 4.113 19 C -0.188 4.188 20 C 0.018 3.982 21 N -0.204 5.204 22 C -0.071 4.071 23 C -0.156 4.156 24 C -0.162 4.162 25 C -0.156 4.156 26 C -0.079 4.079 27 C -0.154 4.154 28 C -0.096 4.096 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.258 0.742 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.149 0.851 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.016 -18.948 -10.421 23.832 hybrid contribution -1.287 1.509 0.602 2.073 sum -11.304 -17.440 -9.819 22.985 Atomic orbital electron populations 1.69619 1.06101 1.28613 1.49031 1.25371 0.95718 1.00099 0.96442 0.85714 0.79895 0.80414 0.77889 1.18861 1.20485 1.20474 1.19919 0.93802 0.81779 1.48032 0.87179 1.41742 1.09437 1.04286 1.61496 1.18402 0.87370 0.83628 0.86860 1.90658 1.12890 1.86577 1.57939 1.30762 1.19106 1.16180 1.11784 1.04236 0.74136 0.73532 0.74454 1.93561 1.72094 1.85058 1.43160 1.93543 1.65224 1.85289 1.48535 1.53631 1.63689 1.40206 1.25145 1.17264 0.90103 1.05396 0.87031 1.21327 0.92832 0.98404 0.98690 1.21187 1.00541 1.03985 0.93048 1.19062 0.92621 0.95763 0.90726 1.59138 1.03048 1.53577 1.04592 1.22294 1.00022 0.95174 0.89624 1.21629 0.94990 1.02524 0.96504 1.21617 0.96089 1.00242 0.98293 1.21617 0.98725 1.01005 0.94230 1.22313 0.86554 1.00125 0.98927 1.20713 0.91859 1.03727 0.99067 1.21475 1.00989 0.95325 0.91798 0.91530 0.76978 0.84020 0.83821 0.74231 0.85098 0.85045 0.93472 0.89713 0.90936 0.90997 0.91577 0.91951 0.90984 0.91122 0.89860 0.93376 0.85136 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.60 13.05 55.50 0.72 -22.87 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.61 16 3 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 4 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.31 -8.48 9.68 -14.93 -0.14 -8.63 16 8 H 0.11 3.20 7.16 -52.49 -0.38 2.82 16 9 N -0.54 -13.62 5.29 -10.97 -0.06 -13.68 16 10 C 0.45 11.02 7.80 -10.99 -0.09 10.94 16 11 O -0.59 -16.69 15.33 5.46 0.08 -16.61 16 12 C -0.65 -11.23 6.48 36.00 0.23 -11.00 16 13 S 2.65 46.56 4.62 -107.50 -0.50 46.06 16 14 O -0.95 -19.39 18.08 -57.54 -1.04 -20.43 16 15 O -0.94 -19.37 16.77 -59.06 -0.99 -20.36 16 16 N -1.07 -13.13 5.61 32.46 0.18 -12.95 16 17 C 0.10 1.16 5.72 -83.67 -0.48 0.69 16 18 C -0.09 -0.93 9.96 -39.40 -0.39 -1.32 16 19 C -0.17 -1.62 8.82 -39.40 -0.35 -1.97 16 20 C 0.12 1.20 5.65 -83.67 -0.47 0.73 16 21 N -0.49 -4.37 4.71 -171.08 -0.81 -5.18 16 22 C 0.05 0.45 5.26 -3.83 -0.02 0.43 16 23 C -0.12 -0.78 6.09 -26.65 -0.16 -0.94 16 24 C -0.12 -0.76 6.00 -26.61 -0.16 -0.92 16 25 C -0.12 -0.72 6.09 -26.65 -0.16 -0.89 16 26 C 0.05 0.35 4.15 -3.83 -0.02 0.34 16 27 C -0.13 -1.44 9.16 -39.41 -0.36 -1.80 16 28 C -0.07 -0.91 9.21 -39.41 -0.36 -1.28 16 29 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.40 9.39 7.90 -40.82 -0.32 9.07 16 31 H 0.14 2.07 8.14 -51.92 -0.42 1.65 16 32 H 0.14 1.98 8.14 -51.92 -0.42 1.56 16 33 H 0.42 4.02 8.92 -34.47 -0.31 3.71 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.13 1.03 5.80 -52.48 -0.30 0.73 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.68 6.70 -51.93 -0.35 0.33 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.57 6.98 -51.93 -0.36 0.21 16 45 H 0.05 0.37 7.74 -51.93 -0.40 -0.03 16 46 H 0.13 1.21 7.15 -52.49 -0.38 0.83 16 47 H 0.14 1.73 7.79 -52.49 -0.41 1.32 16 LS Contribution 395.69 15.07 5.96 5.96 Total: -1.00 -35.90 395.69 -11.06 -46.95 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -6.57 Total: 12.53 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -3.03 Total: -15.03 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.04 Total: -54.68 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -1.95 Total: -57.40 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 46.56 SS G_CDS: -0.50 Total: 46.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.90 -11.06 -46.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.528 kcal (2) G-P(sol) polarization free energy of solvation -35.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds