Wall clock time and date at job start Tue Mar 31 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48495 * 109.47036 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47281 * 300.00372 * 3 2 1 6 6 H 1.48496 * 109.46711 * 60.00603 * 3 2 1 7 7 C 1.38955 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99540 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99609 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99947 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99634 * 180.02562 * 10 9 7 13 13 S 1.81401 * 109.47094 * 180.02562 * 12 10 9 14 14 O 1.42106 * 110.54005 * 72.61363 * 13 12 10 15 15 O 1.42088 * 110.54283 * 295.86226 * 13 12 10 16 16 N 1.65605 * 104.45122 * 184.23576 * 13 12 10 17 17 C 1.39997 * 119.99757 * 63.93674 * 16 13 12 18 18 C 1.38862 * 119.99911 * 254.67916 * 17 16 13 19 19 C 1.38094 * 119.99811 * 179.81211 * 18 17 16 20 20 C 1.38858 * 120.00195 * 0.42319 * 19 18 17 21 21 N 1.39997 * 120.00187 * 179.81210 * 20 19 18 22 22 C 1.46854 * 111.00108 * 124.22974 * 21 20 19 23 23 C 1.53031 * 109.51892 * 174.15829 * 22 21 20 24 24 C 1.53122 * 109.28107 * 59.18340 * 23 22 21 25 25 C 1.53120 * 109.15897 * 302.33918 * 24 23 22 26 26 C 1.46844 * 110.99906 * 0.02562 * 21 20 19 27 27 C 1.38867 * 119.99673 * 359.82893 * 20 19 18 28 28 C 1.38082 * 120.00102 * 359.95757 * 27 20 19 29 29 H 0.97002 * 119.99964 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99942 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47443 * 60.00008 * 12 10 9 32 32 H 1.09007 * 109.47259 * 300.00413 * 12 10 9 33 33 H 0.96995 * 120.00089 * 244.21556 * 16 13 12 34 34 H 1.07999 * 120.00261 * 0.02562 * 18 17 16 35 35 H 1.08004 * 120.00029 * 180.23188 * 19 18 17 36 36 H 1.08991 * 109.45958 * 294.17553 * 22 21 20 37 37 H 1.08999 * 109.45932 * 54.14726 * 22 21 20 38 38 H 1.08998 * 109.51014 * 299.23389 * 23 22 21 39 39 H 1.09004 * 109.50182 * 179.12038 * 23 22 21 40 40 H 1.08998 * 109.52346 * 182.43411 * 24 23 22 41 41 H 1.08993 * 109.52350 * 62.24672 * 24 23 22 42 42 H 1.08997 * 109.50279 * 297.71802 * 25 24 23 43 43 H 1.08995 * 109.50607 * 177.59411 * 25 24 23 44 44 H 1.08990 * 109.46572 * 305.85496 * 26 21 20 45 45 H 1.09001 * 109.46182 * 65.82778 * 26 21 20 46 46 H 1.07995 * 119.99743 * 179.97438 * 27 20 19 47 47 H 1.07998 * 120.00185 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 16 2.4225 -6.2417 -0.0002 14 8 3.0478 -6.3623 1.2702 15 8 3.1886 -6.2436 -1.1969 16 7 1.4756 -7.5951 -0.1194 17 6 0.7014 -7.8089 -1.2660 18 6 -0.6726 -7.6128 -1.2225 19 6 -1.4358 -7.8199 -2.3547 20 6 -0.8304 -8.2328 -3.5342 21 7 -1.6046 -8.4466 -4.6808 22 6 -1.1122 -7.6414 -5.8060 23 6 -1.8865 -8.0076 -7.0742 24 6 -3.3782 -7.7457 -6.8492 25 6 -3.8548 -8.5588 -5.6424 26 6 -3.0235 -8.1766 -4.4156 27 6 0.5430 -8.4339 -3.5762 28 6 1.3067 -8.2225 -2.4454 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6174 -4.9205 -0.8914 32 1 0.6167 -4.9208 0.8886 33 1 1.4543 -8.2376 0.6069 34 1 -1.1440 -7.2950 -0.3043 35 1 -2.5040 -7.6638 -2.3219 36 1 -1.2555 -6.5837 -5.5856 37 1 -0.0514 -7.8403 -5.9579 38 1 -1.7325 -9.0622 -7.3029 39 1 -1.5315 -7.3988 -7.9057 40 1 -3.9384 -8.0458 -7.7348 41 1 -3.5371 -6.6843 -6.6590 42 1 -3.7318 -9.6220 -5.8485 43 1 -4.9061 -8.3439 -5.4510 44 1 -3.3508 -8.7640 -3.5579 45 1 -3.1576 -7.1162 -4.2020 46 1 1.0138 -8.7554 -4.4934 47 1 2.3747 -8.3793 -2.4779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060336273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:05 Heat of formation + Delta-G solvation = -104.822147 kcal Electronic energy + Delta-G solvation = -30948.565320 eV Core-core repulsion = 26642.954643 eV Total energy + Delta-G solvation = -4305.610677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.37364 -40.35971 -39.31021 -38.19256 -37.07864 -36.30352 -36.10249 -33.67855 -33.54252 -32.59893 -31.41184 -31.22475 -28.83819 -26.85881 -25.36677 -24.87388 -22.71255 -22.49333 -21.92799 -20.75880 -20.51024 -20.03623 -19.09228 -18.89978 -18.12718 -17.65180 -17.43788 -16.77823 -16.59061 -16.51748 -15.98762 -15.84602 -15.72939 -15.62154 -15.02095 -14.95459 -14.73824 -14.59725 -14.44670 -14.17750 -13.88026 -13.71931 -13.65576 -13.41754 -13.24349 -13.19075 -13.01862 -12.96583 -12.72785 -12.56339 -12.51622 -12.21133 -12.14158 -12.04027 -11.69673 -11.68929 -11.39031 -11.34473 -11.00620 -10.84155 -10.53621 -10.21120 -9.94683 -8.77036 -8.60632 -6.11197 -0.97392 0.25943 0.41145 1.27907 1.39929 1.54104 1.71464 1.74606 2.21630 2.52424 2.59692 2.86037 2.99424 3.03475 3.21698 3.77728 3.85740 3.90195 3.97670 3.98726 4.02857 4.07476 4.22068 4.23401 4.33068 4.38810 4.40222 4.52798 4.56033 4.64410 4.68784 4.86381 4.87659 4.94032 5.09449 5.10955 5.21844 5.24194 5.31279 5.31866 5.33188 5.47096 5.49858 5.71110 5.78657 6.02539 6.09749 6.32509 6.33433 6.92318 7.27028 7.80731 8.56003 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.008866 B = 0.002672 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.279046 B =10477.978565 C =12684.247900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.003 4.003 3 Si 0.996 3.004 4 H -0.274 1.274 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.347 4.347 8 H 0.084 0.916 9 N -0.541 5.541 10 C 0.443 3.557 11 O -0.640 6.640 12 C -0.638 4.638 13 S 2.654 3.346 14 O -0.984 6.984 15 O -0.975 6.975 16 N -1.046 6.046 17 C 0.076 3.924 18 C -0.084 4.084 19 C -0.167 4.167 20 C 0.115 3.885 21 N -0.492 5.492 22 C 0.051 3.949 23 C -0.115 4.115 24 C -0.125 4.125 25 C -0.115 4.115 26 C 0.043 3.957 27 C -0.141 4.141 28 C -0.092 4.092 29 H 0.284 0.716 30 H 0.404 0.596 31 H 0.174 0.826 32 H 0.186 0.814 33 H 0.435 0.565 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.138 0.862 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.478 -18.972 -10.535 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.205 4.205 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.476 4.476 8 H 0.102 0.898 9 N -0.175 5.175 10 C 0.229 3.771 11 O -0.530 6.530 12 C -0.769 4.769 13 S 2.747 3.253 14 O -0.974 6.974 15 O -0.965 6.965 16 N -0.805 5.805 17 C -0.020 4.020 18 C -0.106 4.106 19 C -0.189 4.189 20 C 0.016 3.984 21 N -0.207 5.207 22 C -0.074 4.074 23 C -0.153 4.153 24 C -0.162 4.162 25 C -0.153 4.153 26 C -0.083 4.083 27 C -0.162 4.162 28 C -0.113 4.113 29 H 0.093 0.907 30 H 0.239 0.761 31 H 0.192 0.808 32 H 0.204 0.796 33 H 0.276 0.724 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.156 0.844 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.887 -19.134 -10.787 25.467 hybrid contribution -0.508 1.466 0.627 1.674 sum -13.395 -17.668 -10.159 24.388 Atomic orbital electron populations 1.69650 1.06819 1.29943 1.48236 1.26128 0.96637 1.02548 0.95172 0.84837 0.78058 0.76541 0.78734 1.19840 1.19091 1.19067 1.19859 0.93139 0.83613 1.50993 0.89816 1.41771 1.09704 1.04267 1.61806 1.19386 0.87283 0.85429 0.84979 1.90630 1.15342 1.87745 1.59317 1.30663 1.19083 1.11699 1.15426 1.03677 0.74460 0.74185 0.72983 1.93507 1.73691 1.85784 1.44406 1.93495 1.67149 1.86078 1.49776 1.52937 1.63191 1.38419 1.25912 1.17414 0.90870 1.07124 0.86545 1.21583 0.91837 0.97257 0.99873 1.21489 1.01704 1.03174 0.92503 1.19275 0.92527 0.94924 0.91624 1.59154 1.03813 1.53474 1.04224 1.22338 1.00291 0.94537 0.90216 1.21618 0.95284 1.02608 0.95805 1.21630 0.95698 1.00067 0.98850 1.21612 0.99272 1.00788 0.93577 1.22435 0.85651 1.00258 0.99974 1.20818 0.92408 1.03982 0.99007 1.21525 1.00731 0.96347 0.92704 0.90671 0.76102 0.80843 0.79644 0.72438 0.82440 0.82779 0.94422 0.90014 0.90947 0.90267 0.90500 0.92303 0.91191 0.89704 0.89027 0.93448 0.84378 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.91 13.05 21.66 0.28 -46.63 16 2 C 0.00 -0.16 5.50 84.93 0.47 0.31 16 3 Si 1.00 41.85 29.55 68.60 2.03 43.88 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 6 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 7 C -0.35 -19.61 9.68 84.04 0.81 -18.79 16 8 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 9 N -0.54 -27.69 5.29 -306.99 -1.62 -29.31 16 10 C 0.44 21.72 7.80 87.66 0.68 22.40 16 11 O -0.64 -37.26 15.33 -2.96 -0.05 -37.31 16 12 C -0.64 -21.18 6.48 71.23 0.46 -20.72 16 13 S 2.65 93.12 4.62 -56.49 -0.26 92.86 16 14 O -0.98 -40.63 18.08 -127.65 -2.31 -42.94 16 15 O -0.98 -41.49 16.77 -126.19 -2.12 -43.61 16 16 N -1.05 -24.30 5.61 -51.23 -0.29 -24.58 16 17 C 0.08 1.69 5.72 38.14 0.22 1.91 16 18 C -0.08 -1.47 9.96 22.38 0.22 -1.25 16 19 C -0.17 -2.80 8.82 22.38 0.20 -2.60 16 20 C 0.12 2.19 5.65 38.14 0.22 2.40 16 21 N -0.49 -7.97 4.71 -695.17 -3.27 -11.24 16 22 C 0.05 0.80 5.26 86.32 0.45 1.25 16 23 C -0.12 -1.35 6.09 30.65 0.19 -1.17 16 24 C -0.12 -1.28 6.00 30.68 0.18 -1.09 16 25 C -0.11 -1.13 6.09 30.65 0.19 -0.95 16 26 C 0.04 0.54 4.15 86.33 0.36 0.90 16 27 C -0.14 -2.99 9.16 22.38 0.20 -2.78 16 28 C -0.09 -2.22 9.21 22.38 0.21 -2.02 16 29 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 30 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 31 H 0.17 4.63 8.14 -2.39 -0.02 4.61 16 32 H 0.19 4.54 8.14 -2.39 -0.02 4.52 16 33 H 0.43 7.65 8.92 -96.75 -0.86 6.79 16 34 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.15 1.85 5.80 -2.91 -0.02 1.83 16 36 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 1.28 6.70 -2.39 -0.02 1.27 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.09 0.98 6.98 -2.39 -0.02 0.97 16 45 H 0.05 0.61 7.74 -2.39 -0.02 0.59 16 46 H 0.14 2.56 7.15 -2.91 -0.02 2.54 16 47 H 0.13 3.29 7.79 -2.91 -0.02 3.27 16 Total: -1.00 -79.74 395.69 -3.12 -82.86 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: -0.58 Total: 38.22 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 5.06 Total: -22.19 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -4.90 Total: -111.77 kcal Atomic # 8 Polarization: -119.39 SS G_CDS: -4.47 Total: -123.86 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: 93.12 SS G_CDS: -0.26 Total: 92.86 kcal Total: -79.74 -3.12 -82.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.964 kcal (2) G-P(sol) polarization free energy of solvation -79.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds