Wall clock time and date at job start Tue Mar 31 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 119.99857 * 2 1 4 4 N 1.46899 * 109.47280 * 124.21880 * 3 2 1 5 5 C 1.46900 * 110.99843 * 297.41130 * 4 3 2 6 6 C 1.50708 * 109.46899 * 287.44049 * 5 4 3 7 7 O 1.21279 * 120.00056 * 354.24298 * 6 5 4 8 8 N 1.34770 * 119.99648 * 174.23772 * 6 5 4 9 9 C 1.46510 * 119.99986 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46976 * 90.00221 * 9 8 6 11 11 H 1.07999 * 119.99669 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99903 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99834 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99669 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47092 * 90.00352 * 14 12 10 16 16 H 1.48508 * 109.47046 * 209.99720 * 14 12 10 17 17 H 1.48500 * 109.47525 * 330.00006 * 14 12 10 18 18 C 1.46504 * 120.00660 * 0.02562 * 8 6 5 19 19 C 1.52998 * 109.46885 * 89.99379 * 18 8 6 20 20 C 1.47201 * 109.47018 * 180.02562 * 19 18 8 21 21 N 7.37476 * 88.34083 * 92.72417 * 2 1 3 22 22 C 1.46895 * 111.00144 * 61.36171 * 4 3 2 23 23 C 1.50701 * 109.47094 * 66.04966 * 22 4 3 24 24 C 1.38389 * 119.92306 * 270.01992 * 23 22 4 25 25 C 1.38339 * 120.30391 * 179.97438 * 24 23 22 26 26 C 1.37976 * 120.15088 * 359.67893 * 25 24 23 27 27 C 1.39609 * 119.84342 * 0.59767 * 26 25 24 28 28 C 1.43202 * 120.15027 * 179.69589 * 27 26 25 29 29 N 8.24272 * 159.25005 * 343.59567 * 2 1 3 30 30 C 1.37925 * 119.92341 * 90.00023 * 23 22 4 31 31 H 1.08001 * 120.00009 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.99994 * 359.97438 * 1 2 3 33 33 H 1.07997 * 119.99994 * 180.02562 * 2 1 3 34 34 H 1.08995 * 109.47470 * 4.21215 * 3 2 1 35 35 H 1.09005 * 109.47079 * 244.21886 * 3 2 1 36 36 H 1.09007 * 109.47136 * 47.43581 * 5 4 3 37 37 H 1.08999 * 109.47498 * 167.44201 * 5 4 3 38 38 H 1.08998 * 109.47421 * 210.00179 * 9 8 6 39 39 H 1.09004 * 109.46689 * 330.00272 * 9 8 6 40 40 H 0.97005 * 119.99886 * 180.02562 * 13 12 10 41 41 H 1.08996 * 109.47296 * 210.00060 * 18 8 6 42 42 H 1.09005 * 109.46671 * 329.99936 * 18 8 6 43 43 H 1.08996 * 109.47709 * 300.00428 * 19 18 8 44 44 H 1.09005 * 109.47011 * 60.00765 * 19 18 8 45 45 H 1.09000 * 109.47371 * 306.05245 * 22 4 3 46 46 H 1.09001 * 109.47311 * 186.04942 * 22 4 3 47 47 H 1.07995 * 119.84630 * 359.97438 * 24 23 22 48 48 H 1.07996 * 119.92572 * 180.02562 * 25 24 23 49 49 H 1.08001 * 120.07369 * 180.29657 * 26 25 24 50 50 H 1.07991 * 120.07666 * 0.04704 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9828 1.3398 1.1452 5 6 2.2453 1.2809 2.4143 6 6 1.5505 2.5968 2.6531 7 8 1.7421 3.5289 1.9012 8 7 0.7162 2.7376 3.7021 9 6 0.0412 4.0170 3.9346 10 6 -1.2782 4.0284 3.2064 11 1 -1.5835 3.1685 2.6287 12 6 -2.0955 5.1366 3.2779 13 7 -1.7233 6.1837 3.9810 14 14 -3.7305 5.1509 2.3747 15 1 -4.7927 4.6182 3.2654 16 1 -4.0665 6.5430 1.9814 17 1 -3.6323 4.3032 1.1594 18 6 0.4850 1.6118 4.6106 19 6 1.5089 1.6548 5.7467 20 6 1.2771 0.5233 6.6593 21 7 1.0965 -0.3504 7.3633 22 6 3.9711 0.2564 1.0600 23 6 4.8692 0.4880 -0.1278 24 6 4.5295 -0.0361 -1.3627 25 6 5.3479 0.1721 -2.4585 26 6 6.5063 0.9104 -2.3280 27 6 6.8579 1.4371 -1.0838 28 6 8.0620 2.1988 -0.9395 29 7 9.0180 2.8014 -0.8247 30 6 6.0276 1.2222 0.0184 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5400 0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3576 2.1322 0.0755 35 1 2.6322 1.3963 -0.9254 36 1 1.5048 0.4823 2.3675 37 1 2.9409 1.0841 3.2301 38 1 -0.1322 4.1475 5.0027 39 1 0.6667 4.8300 3.5660 40 1 -2.2985 6.9633 4.0316 41 1 -0.5207 1.6800 5.0251 42 1 0.5895 0.6754 4.0626 43 1 2.5147 1.5866 5.3322 44 1 1.4045 2.5913 6.2947 45 1 3.4558 -0.6973 0.9453 46 1 4.5701 0.2385 1.9704 47 1 3.6214 -0.6103 -1.4715 48 1 5.0768 -0.2394 -3.4194 49 1 7.1418 1.0762 -3.1853 50 1 6.2917 1.6303 0.9827 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063299736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:51 Heat of formation + Delta-G solvation = 83.719819 kcal Electronic energy + Delta-G solvation = -32242.325124 eV Core-core repulsion = 28042.998046 eV Total energy + Delta-G solvation = -4199.327078 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.24089 -39.37919 -37.66257 -36.81667 -36.49033 -35.15529 -33.42053 -32.93280 -31.93575 -31.55419 -30.83931 -28.63647 -26.91996 -26.65743 -24.15510 -24.04126 -23.68850 -22.29623 -21.68509 -19.90744 -18.42773 -18.33978 -17.62208 -16.68189 -16.65359 -16.47982 -16.27000 -15.92364 -15.55163 -15.15318 -14.80553 -14.65372 -14.50969 -14.22745 -14.16390 -14.14743 -13.76698 -13.44122 -13.30979 -13.10086 -13.02164 -12.94699 -12.51699 -12.44534 -12.36595 -12.29131 -12.07232 -11.83889 -11.71521 -11.60196 -11.51678 -11.33690 -11.25826 -11.20889 -10.99974 -10.83312 -10.62777 -10.19865 -9.71652 -9.53187 -9.25940 -9.13825 -9.02265 -8.48630 -8.22037 -7.82580 -6.09912 -4.14463 0.48697 0.98884 2.16827 2.43754 2.66611 2.70489 2.78232 3.26278 3.30783 3.34464 3.38702 3.43878 3.61728 3.65339 4.00900 4.29716 4.40816 4.43073 4.52278 4.70363 4.82811 4.89250 4.92697 4.94297 5.02736 5.10560 5.11999 5.17608 5.25037 5.27290 5.33508 5.43057 5.48624 5.52845 5.63379 5.63669 5.81375 5.85028 5.95953 5.98260 6.05105 6.12415 6.18952 6.47035 6.55002 6.55350 6.85803 6.98914 7.05129 7.24951 7.37287 7.44080 7.54909 7.86282 8.16677 8.28571 8.84878 9.03199 9.51127 10.98181 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.008160 B = 0.002600 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.622141 B =10765.601785 C =11830.979886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.207 4.207 3 C 0.075 3.925 4 N -0.504 5.504 5 C 0.030 3.970 6 C 0.509 3.491 7 O -0.512 6.512 8 N -0.600 5.600 9 C 0.246 3.754 10 C -0.526 4.526 11 H 0.057 0.943 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.895 3.105 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.118 3.882 19 C -0.051 4.051 20 C 0.217 3.783 21 N -0.446 5.446 22 C 0.087 3.913 23 C -0.072 4.072 24 C -0.082 4.082 25 C -0.122 4.122 26 C -0.072 4.072 27 C -0.032 4.032 28 C 0.257 3.743 29 N -0.421 5.421 30 C -0.046 4.046 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.033 0.967 39 H 0.046 0.954 40 H 0.264 0.736 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.129 0.871 48 H 0.132 0.868 49 H 0.130 0.870 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.334 -16.353 -8.474 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.226 4.226 3 C -0.052 4.052 4 N -0.226 5.226 5 C -0.101 4.101 6 C 0.294 3.706 7 O -0.386 6.386 8 N -0.333 5.333 9 C 0.128 3.872 10 C -0.565 4.565 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.723 3.277 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.009 4.009 19 C -0.092 4.092 20 C -0.101 4.101 21 N -0.124 5.124 22 C -0.041 4.041 23 C -0.073 4.073 24 C -0.101 4.101 25 C -0.140 4.140 26 C -0.093 4.093 27 C -0.036 4.036 28 C -0.058 4.058 29 N -0.096 5.096 30 C -0.067 4.067 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.124 0.876 44 H 0.136 0.864 45 H 0.070 0.930 46 H 0.105 0.895 47 H 0.146 0.854 48 H 0.150 0.850 49 H 0.148 0.852 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.862 -15.521 -7.598 21.542 hybrid contribution -1.819 -0.610 -0.667 2.032 sum 11.042 -16.131 -8.265 21.224 Atomic orbital electron populations 1.24025 0.96082 1.02240 0.98090 1.23646 0.96784 0.99762 1.02446 1.21536 0.94944 0.94840 0.93878 1.61915 1.15428 1.43865 1.01423 1.22169 0.97964 0.97042 0.92934 1.20131 0.79644 0.89288 0.81492 1.90696 1.62052 1.41136 1.44710 1.48223 1.44736 1.14449 1.25872 1.19320 0.92016 0.79119 0.96784 1.21390 1.02786 1.01278 1.31072 0.92482 1.24908 0.98359 0.95294 0.95403 1.69915 1.37593 1.05117 1.40560 0.86550 0.83694 0.77393 0.80084 1.20714 1.21133 1.19910 1.21287 0.98922 0.90592 0.90055 1.19922 1.02615 0.92413 0.94296 1.29156 0.93034 0.94166 0.93769 1.81232 1.08942 1.11668 1.10520 1.21132 0.93283 0.93379 0.96258 1.19618 0.94833 0.97706 0.95140 1.21381 0.98857 0.97799 0.92075 1.21048 0.94405 0.99310 0.99214 1.21158 0.96867 0.95680 0.95549 1.15981 0.90810 1.01237 0.95526 1.25734 0.92951 0.93382 0.93778 1.81257 1.11409 1.09593 1.07343 1.21072 0.92627 0.95034 0.97934 0.88782 0.87898 0.87728 0.88509 0.89739 0.91687 0.88615 0.94884 0.93558 0.92680 0.88868 0.90864 0.87615 0.86450 0.93035 0.89532 0.85357 0.84999 0.85198 0.84742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 14.32 29.02 0.42 -1.35 16 2 C -0.21 -1.99 7.12 -36.03 -0.26 -2.25 16 3 C 0.08 0.89 5.12 -4.98 -0.03 0.86 16 4 N -0.50 -5.72 4.29 -238.96 -1.02 -6.74 16 5 C 0.03 0.35 4.05 -4.97 -0.02 0.33 16 6 C 0.51 8.66 7.28 -10.98 -0.08 8.58 16 7 O -0.51 -11.22 14.75 5.56 0.08 -11.14 16 8 N -0.60 -10.26 2.46 -175.05 -0.43 -10.69 16 9 C 0.25 5.62 5.16 -5.19 -0.03 5.59 16 10 C -0.53 -13.55 9.39 -34.44 -0.32 -13.87 16 11 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 14 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.12 1.45 5.19 -4.04 -0.02 1.43 16 19 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 20 C 0.22 2.45 15.44 -20.74 -0.32 2.13 16 21 N -0.45 -6.26 18.54 42.17 0.78 -5.47 16 22 C 0.09 0.68 4.93 -4.98 -0.02 0.66 16 23 C -0.07 -0.56 4.88 -104.68 -0.51 -1.08 16 24 C -0.08 -0.54 7.93 -39.49 -0.31 -0.86 16 25 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 26 C -0.07 -0.48 9.76 -39.17 -0.38 -0.86 16 27 C -0.03 -0.27 5.73 -106.93 -0.61 -0.88 16 28 C 0.26 2.71 15.33 -22.47 -0.34 2.36 16 29 N -0.42 -5.46 18.54 41.84 0.78 -4.68 16 30 C -0.05 -0.38 9.41 -39.17 -0.37 -0.75 16 31 H 0.09 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 33 H 0.10 0.80 6.47 -52.49 -0.34 0.46 16 34 H 0.10 1.53 6.28 -51.93 -0.33 1.20 16 35 H 0.08 0.93 6.07 -51.93 -0.32 0.61 16 36 H 0.07 0.69 5.75 -51.93 -0.30 0.39 16 37 H 0.10 0.85 7.05 -51.93 -0.37 0.48 16 38 H 0.03 0.75 8.07 -51.93 -0.42 0.34 16 39 H 0.05 1.23 7.42 -51.93 -0.39 0.84 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.09 1.25 8.07 -51.93 -0.42 0.84 16 42 H 0.07 0.74 6.28 -51.93 -0.33 0.41 16 43 H 0.11 0.79 7.40 -51.93 -0.38 0.40 16 44 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.34 6.15 -51.93 -0.32 0.02 16 46 H 0.09 0.58 7.80 -51.93 -0.40 0.17 16 47 H 0.13 0.70 7.39 -52.49 -0.39 0.32 16 48 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 49 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 50 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 429.79 15.07 6.48 6.48 Total: -1.00 -33.66 429.79 -8.27 -41.93 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.76 Total: -0.90 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.89 Total: -0.16 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.84 Total: -51.94 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.48 Total: 6.48 kcal Total: -33.66 -8.27 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063299736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.647 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds