Wall clock time and date at job start Tue Mar 31 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 119.99857 * 2 1 4 4 N 1.46899 * 109.47280 * 124.21880 * 3 2 1 5 5 C 1.46900 * 110.99843 * 297.41130 * 4 3 2 6 6 C 1.50708 * 109.46899 * 287.44049 * 5 4 3 7 7 O 1.21279 * 120.00056 * 354.24298 * 6 5 4 8 8 N 1.34770 * 119.99648 * 174.23772 * 6 5 4 9 9 C 1.46510 * 119.99986 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46976 * 90.00221 * 9 8 6 11 11 H 1.07999 * 119.99669 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99903 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99834 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99669 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47092 * 90.00352 * 14 12 10 16 16 H 1.48508 * 109.47046 * 209.99720 * 14 12 10 17 17 H 1.48500 * 109.47525 * 330.00006 * 14 12 10 18 18 C 1.46504 * 120.00660 * 0.02562 * 8 6 5 19 19 C 1.52998 * 109.46885 * 89.99379 * 18 8 6 20 20 C 1.47201 * 109.47018 * 180.02562 * 19 18 8 21 21 N 7.37476 * 88.34083 * 92.72417 * 2 1 3 22 22 C 1.46895 * 111.00144 * 61.36171 * 4 3 2 23 23 C 1.50701 * 109.47094 * 66.04966 * 22 4 3 24 24 C 1.38389 * 119.92306 * 270.01992 * 23 22 4 25 25 C 1.38339 * 120.30391 * 179.97438 * 24 23 22 26 26 C 1.37976 * 120.15088 * 359.67893 * 25 24 23 27 27 C 1.39609 * 119.84342 * 0.59767 * 26 25 24 28 28 C 1.43202 * 120.15027 * 179.69589 * 27 26 25 29 29 N 8.24272 * 159.25005 * 343.59567 * 2 1 3 30 30 C 1.37925 * 119.92341 * 90.00023 * 23 22 4 31 31 H 1.08001 * 120.00009 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.99994 * 359.97438 * 1 2 3 33 33 H 1.07997 * 119.99994 * 180.02562 * 2 1 3 34 34 H 1.08995 * 109.47470 * 4.21215 * 3 2 1 35 35 H 1.09005 * 109.47079 * 244.21886 * 3 2 1 36 36 H 1.09007 * 109.47136 * 47.43581 * 5 4 3 37 37 H 1.08999 * 109.47498 * 167.44201 * 5 4 3 38 38 H 1.08998 * 109.47421 * 210.00179 * 9 8 6 39 39 H 1.09004 * 109.46689 * 330.00272 * 9 8 6 40 40 H 0.97005 * 119.99886 * 180.02562 * 13 12 10 41 41 H 1.08996 * 109.47296 * 210.00060 * 18 8 6 42 42 H 1.09005 * 109.46671 * 329.99936 * 18 8 6 43 43 H 1.08996 * 109.47709 * 300.00428 * 19 18 8 44 44 H 1.09005 * 109.47011 * 60.00765 * 19 18 8 45 45 H 1.09000 * 109.47371 * 306.05245 * 22 4 3 46 46 H 1.09001 * 109.47311 * 186.04942 * 22 4 3 47 47 H 1.07995 * 119.84630 * 359.97438 * 24 23 22 48 48 H 1.07996 * 119.92572 * 180.02562 * 25 24 23 49 49 H 1.08001 * 120.07369 * 180.29657 * 26 25 24 50 50 H 1.07991 * 120.07666 * 0.04704 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9828 1.3398 1.1452 5 6 2.2453 1.2809 2.4143 6 6 1.5505 2.5968 2.6531 7 8 1.7421 3.5289 1.9012 8 7 0.7162 2.7376 3.7021 9 6 0.0412 4.0170 3.9346 10 6 -1.2782 4.0284 3.2064 11 1 -1.5835 3.1685 2.6287 12 6 -2.0955 5.1366 3.2779 13 7 -1.7233 6.1837 3.9810 14 14 -3.7305 5.1509 2.3747 15 1 -4.7927 4.6182 3.2654 16 1 -4.0665 6.5430 1.9814 17 1 -3.6323 4.3032 1.1594 18 6 0.4850 1.6118 4.6106 19 6 1.5089 1.6548 5.7467 20 6 1.2771 0.5233 6.6593 21 7 1.0965 -0.3504 7.3633 22 6 3.9711 0.2564 1.0600 23 6 4.8692 0.4880 -0.1278 24 6 4.5295 -0.0361 -1.3627 25 6 5.3479 0.1721 -2.4585 26 6 6.5063 0.9104 -2.3280 27 6 6.8579 1.4371 -1.0838 28 6 8.0620 2.1988 -0.9395 29 7 9.0180 2.8014 -0.8247 30 6 6.0276 1.2222 0.0184 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5400 0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3576 2.1322 0.0755 35 1 2.6322 1.3963 -0.9254 36 1 1.5048 0.4823 2.3675 37 1 2.9409 1.0841 3.2301 38 1 -0.1322 4.1475 5.0027 39 1 0.6667 4.8300 3.5660 40 1 -2.2985 6.9633 4.0316 41 1 -0.5207 1.6800 5.0251 42 1 0.5895 0.6754 4.0626 43 1 2.5147 1.5866 5.3322 44 1 1.4045 2.5913 6.2947 45 1 3.4558 -0.6973 0.9453 46 1 4.5701 0.2385 1.9704 47 1 3.6214 -0.6103 -1.4715 48 1 5.0768 -0.2394 -3.4194 49 1 7.1418 1.0762 -3.1853 50 1 6.2917 1.6303 0.9827 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063299736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:50 Heat of formation + Delta-G solvation = 64.043991 kcal Electronic energy + Delta-G solvation = -32243.178332 eV Core-core repulsion = 28042.998046 eV Total energy + Delta-G solvation = -4200.180286 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.07554 -40.37419 -38.57884 -37.85107 -37.35458 -36.50754 -34.83292 -34.14432 -32.69538 -32.13087 -32.05923 -29.94594 -28.10743 -27.60662 -25.26884 -24.95520 -24.74933 -23.46042 -22.36186 -20.75146 -19.65997 -19.03540 -18.74725 -18.28115 -17.80739 -17.28974 -17.07850 -16.90345 -16.61419 -16.23554 -15.91702 -15.59889 -15.55112 -15.21691 -15.19446 -14.98792 -14.67907 -14.44870 -14.22831 -14.13162 -13.99474 -13.88781 -13.71887 -13.54662 -13.47306 -13.25241 -13.06461 -12.90438 -12.74940 -12.70886 -12.58233 -12.48020 -12.43737 -12.22325 -12.14278 -12.10614 -11.84384 -11.74067 -11.61277 -10.55634 -10.43064 -10.29461 -9.80261 -9.72567 -9.36262 -9.03866 -8.14559 -6.26361 -0.10725 0.45959 1.38005 1.40117 1.42671 1.51522 1.62574 1.74886 1.88230 1.95312 2.05504 2.33369 2.46791 2.86287 2.94444 3.14992 3.19049 3.38554 3.86097 3.89449 4.02420 4.04376 4.10153 4.17423 4.18255 4.29375 4.39304 4.42288 4.48146 4.50958 4.59848 4.67979 4.74614 4.87077 4.89893 4.98097 5.04092 5.11225 5.13796 5.16953 5.20300 5.39890 5.42473 5.48299 5.62100 5.66593 5.72665 5.79579 5.95244 5.97478 6.16101 6.18483 6.23241 6.46100 6.65213 6.82841 6.93259 7.40062 7.69706 8.91847 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.008160 B = 0.002600 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.622141 B =10765.601785 C =11830.979886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.188 4.188 3 C 0.080 3.920 4 N -0.525 5.525 5 C 0.043 3.957 6 C 0.502 3.498 7 O -0.571 6.571 8 N -0.602 5.602 9 C 0.262 3.738 10 C -0.532 4.532 11 H 0.053 0.947 12 C 0.010 3.990 13 N -0.927 5.927 14 Si 0.954 3.046 15 H -0.268 1.268 16 H -0.287 1.287 17 H -0.272 1.272 18 C 0.115 3.885 19 C -0.039 4.039 20 C 0.246 3.754 21 N -0.490 5.490 22 C 0.089 3.911 23 C -0.083 4.083 24 C -0.078 4.078 25 C -0.119 4.119 26 C -0.069 4.069 27 C -0.051 4.051 28 C 0.279 3.721 29 N -0.474 5.474 30 C -0.054 4.054 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.141 0.859 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.134 0.866 38 H 0.030 0.970 39 H 0.001 0.999 40 H 0.264 0.736 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.139 0.861 44 H 0.117 0.883 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.147 0.853 48 H 0.159 0.841 49 H 0.145 0.855 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.393 -19.979 -9.246 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.207 4.207 3 C -0.048 4.048 4 N -0.248 5.248 5 C -0.088 4.088 6 C 0.291 3.709 7 O -0.449 6.449 8 N -0.334 5.334 9 C 0.141 3.859 10 C -0.571 4.571 11 H 0.071 0.929 12 C -0.189 4.189 13 N -0.568 5.568 14 Si 0.780 3.220 15 H -0.193 1.193 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.010 4.010 19 C -0.080 4.080 20 C -0.071 4.071 21 N -0.168 5.168 22 C -0.038 4.038 23 C -0.083 4.083 24 C -0.097 4.097 25 C -0.137 4.137 26 C -0.089 4.089 27 C -0.055 4.055 28 C -0.035 4.035 29 N -0.150 5.150 30 C -0.075 4.075 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.152 0.848 38 H 0.048 0.952 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.124 0.876 43 H 0.157 0.843 44 H 0.135 0.865 45 H 0.093 0.907 46 H 0.121 0.879 47 H 0.164 0.836 48 H 0.176 0.824 49 H 0.163 0.837 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.925 -19.205 -8.348 24.609 hybrid contribution -1.832 0.530 -0.491 1.970 sum 11.093 -18.676 -8.839 23.451 Atomic orbital electron populations 1.24001 0.96641 1.01663 0.99547 1.23672 0.96219 0.99819 1.00993 1.21326 0.94442 0.94365 0.94627 1.61790 1.15769 1.46382 1.00840 1.22120 0.98821 0.93302 0.94544 1.21204 0.78874 0.90796 0.80052 1.90671 1.63987 1.43704 1.46587 1.48095 1.44349 1.13781 1.27139 1.18726 0.90465 0.81011 0.95711 1.21730 1.03839 1.00941 1.30603 0.92873 1.25710 1.01768 0.95138 0.96286 1.70028 1.38886 1.05725 1.42142 0.85609 0.80113 0.77176 0.79090 1.19325 1.21291 1.19687 1.21486 0.99192 0.89894 0.90402 1.19855 1.03363 0.91725 0.93022 1.29177 0.91592 0.93414 0.92898 1.81278 1.10459 1.13200 1.11887 1.21237 0.92493 0.92908 0.97122 1.19688 0.94623 0.98135 0.95873 1.21661 0.99299 0.97089 0.91657 1.21368 0.93584 0.98485 1.00259 1.21410 0.97355 0.94934 0.95222 1.16097 0.90382 1.02330 0.96651 1.26114 0.92753 0.92380 0.92287 1.81265 1.13130 1.11564 1.09029 1.21145 0.93113 0.95344 0.97879 0.86650 0.91310 0.84152 0.93566 0.89091 0.89833 0.84805 0.95175 0.98119 0.92728 0.90230 0.87610 0.84316 0.86501 0.90692 0.87917 0.83553 0.82352 0.83712 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.50 14.32 67.78 0.97 -2.52 16 2 C -0.19 -3.02 7.12 25.65 0.18 -2.84 16 3 C 0.08 1.78 5.12 85.56 0.44 2.22 16 4 N -0.53 -10.66 4.29 -909.93 -3.90 -14.56 16 5 C 0.04 0.86 4.05 85.56 0.35 1.21 16 6 C 0.50 16.98 7.28 87.66 0.64 17.62 16 7 O -0.57 -26.17 14.75 -3.02 -0.04 -26.21 16 8 N -0.60 -20.48 2.46 -826.12 -2.03 -22.50 16 9 C 0.26 12.43 5.16 85.63 0.44 12.87 16 10 C -0.53 -28.21 9.39 25.60 0.24 -27.97 16 11 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 12 C 0.01 0.54 5.46 84.66 0.46 1.00 16 13 N -0.93 -53.78 13.29 21.45 0.28 -53.49 16 14 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 C 0.12 2.59 5.19 86.38 0.45 3.04 16 19 C -0.04 -0.63 6.03 28.79 0.17 -0.46 16 20 C 0.25 4.92 15.44 89.44 1.38 6.30 16 21 N -0.49 -12.78 18.54 20.01 0.37 -12.41 16 22 C 0.09 1.03 4.93 85.56 0.42 1.45 16 23 C -0.08 -1.04 4.88 -19.90 -0.10 -1.14 16 24 C -0.08 -0.74 7.93 22.33 0.18 -0.57 16 25 C -0.12 -1.00 10.03 22.23 0.22 -0.78 16 26 C -0.07 -0.77 9.76 22.54 0.22 -0.55 16 27 C -0.05 -0.80 5.73 -21.36 -0.12 -0.93 16 28 C 0.28 5.88 15.33 88.33 1.35 7.23 16 29 N -0.47 -12.59 18.54 19.00 0.35 -12.24 16 30 C -0.05 -0.81 9.41 22.54 0.21 -0.60 16 31 H 0.12 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.07 1.80 7.84 -2.91 -0.02 1.78 16 33 H 0.14 1.32 6.47 -2.91 -0.02 1.30 16 34 H 0.05 1.52 6.28 -2.39 -0.02 1.50 16 35 H 0.09 1.85 6.07 -2.38 -0.01 1.83 16 36 H 0.08 1.41 5.75 -2.38 -0.01 1.40 16 37 H 0.13 1.69 7.05 -2.39 -0.02 1.68 16 38 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 39 H 0.00 0.04 7.42 -2.39 -0.02 0.02 16 40 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 41 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 42 H 0.11 1.73 6.28 -2.38 -0.01 1.71 16 43 H 0.14 1.45 7.40 -2.39 -0.02 1.43 16 44 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.08 0.55 6.15 -2.39 -0.01 0.54 16 46 H 0.10 0.89 7.80 -2.39 -0.02 0.88 16 47 H 0.15 0.87 7.39 -2.91 -0.02 0.85 16 48 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 49 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 50 H 0.13 1.96 8.06 -2.92 -0.02 1.94 16 Total: -1.00 -80.02 429.79 6.14 -73.88 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.97 Total: 7.66 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 8.11 Total: 14.61 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -4.92 Total: -115.21 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.04 Total: -26.21 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -80.02 6.14 -73.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063299736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.921 kcal (2) G-P(sol) polarization free energy of solvation -80.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds