Wall clock time and date at job start Tue Mar 31 2020 05:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31605 * 1 3 3 Si 1.86799 * 120.00172 * 2 1 4 4 H 1.48502 * 109.47130 * 274.98732 * 3 2 1 5 5 H 1.48506 * 109.47235 * 34.98448 * 3 2 1 6 6 H 1.48497 * 109.47515 * 154.98525 * 3 2 1 7 7 C 1.38541 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00100 * 185.63018 * 7 2 1 9 9 N 1.36932 * 119.99483 * 5.35488 * 7 2 1 10 10 N 1.40173 * 126.22143 * 353.25805 * 9 7 2 11 11 C 1.31988 * 107.74431 * 179.88310 * 10 9 7 12 12 C 1.41197 * 131.95929 * 180.02562 * 11 10 9 13 13 S 1.76204 * 120.31738 * 0.31984 * 12 11 10 14 14 O 1.42093 * 106.40388 * 48.51250 * 13 12 11 15 15 O 1.42100 * 106.40034 * 181.43773 * 13 12 11 16 16 N 1.65598 * 107.21583 * 294.97458 * 13 12 11 17 17 C 1.44578 * 118.64332 * 269.73527 * 16 13 12 18 18 C 1.54313 * 109.90970 * 270.85098 * 17 16 13 19 19 C 1.47093 * 110.29656 * 288.76242 * 18 17 16 20 20 C 1.52569 * 114.32909 * 62.72927 * 19 18 17 21 21 C 1.50884 * 109.35339 * 274.98127 * 20 19 18 22 22 C 1.47612 * 118.64519 * 89.99897 * 16 13 12 23 23 C 1.35993 * 119.36070 * 180.29025 * 12 11 10 24 24 C 1.40652 * 119.75870 * 0.02871 * 23 12 11 25 25 C 1.34779 * 120.48878 * 0.02562 * 24 23 12 26 26 N 1.37205 * 120.68633 * 359.95993 * 25 24 23 27 27 C 1.34812 * 126.21266 * 173.56486 * 9 7 2 28 28 O 1.21712 * 125.98383 * 359.96106 * 27 9 7 29 29 H 0.96996 * 119.99711 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.45015 * 30.76466 * 17 16 13 31 31 H 1.09000 * 109.44911 * 150.68378 * 17 16 13 32 32 H 1.08998 * 109.40246 * 168.46270 * 18 17 16 33 33 H 1.09006 * 109.27496 * 48.97493 * 18 17 16 34 34 H 1.08998 * 108.51061 * 301.47267 * 19 18 17 35 35 H 1.09004 * 108.38676 * 183.89692 * 19 18 17 36 36 H 1.08993 * 109.49086 * 155.01691 * 20 19 18 37 37 H 1.09004 * 109.48742 * 34.94155 * 20 19 18 38 38 H 1.08998 * 109.36389 * 331.69539 * 21 20 19 39 39 H 1.08998 * 109.36334 * 212.07841 * 21 20 19 40 40 H 1.09001 * 108.94923 * 258.55430 * 22 16 13 41 41 H 1.09004 * 108.94471 * 17.27376 * 22 16 13 42 42 H 1.08004 * 120.12175 * 180.02562 * 23 12 11 43 43 H 1.07999 * 119.75780 * 179.97438 * 24 23 12 44 44 H 1.08001 * 119.66133 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3922 2.1072 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5963 1.4121 0.5920 7 6 2.0088 -1.1998 0.0005 8 1 3.0848 -1.2020 0.0923 9 7 1.3286 -2.3831 -0.1096 10 7 -0.0640 -2.5422 -0.0967 11 6 -0.3230 -3.8296 -0.2294 12 6 -1.5376 -4.5478 -0.2808 13 16 -3.0779 -3.6999 -0.1659 14 8 -3.0090 -2.6166 -1.0828 15 8 -4.0894 -4.6968 -0.2152 16 7 -3.1563 -3.0287 1.3459 17 6 -3.7428 -3.8015 2.4178 18 6 -5.2631 -3.5444 2.4801 19 6 -5.5311 -2.1883 2.9829 20 6 -4.9934 -1.0708 2.0942 21 6 -3.5472 -0.8110 2.4374 22 6 -2.6297 -1.6637 1.5423 23 6 -1.5071 -5.9002 -0.4205 24 6 -0.2709 -6.5650 -0.5112 25 6 0.8837 -5.8717 -0.4601 26 7 0.8753 -4.5069 -0.3198 27 6 1.8768 -3.6073 -0.2444 28 8 3.0672 -3.8567 -0.2904 29 1 -0.4849 0.8400 0.0004 30 1 -3.5658 -4.8621 2.2395 31 1 -3.2876 -3.5122 3.3650 32 1 -5.7267 -4.2737 3.1443 33 1 -5.6870 -3.6492 1.4813 34 1 -5.0822 -2.0907 3.9713 35 1 -6.6097 -2.0646 3.0802 36 1 -5.5748 -0.1637 2.2587 37 1 -5.0712 -1.3685 1.0485 38 1 -3.3722 -1.0670 3.4823 39 1 -3.3232 0.2445 2.2832 40 1 -1.6445 -1.7274 2.0042 41 1 -2.5343 -1.1781 0.5711 42 1 -2.4288 -6.4618 -0.4617 43 1 -0.2468 -7.6391 -0.6217 44 1 1.8254 -6.3958 -0.5305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065129334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:35 Heat of formation + Delta-G solvation = 14.955408 kcal Electronic energy + Delta-G solvation = -33262.146979 eV Core-core repulsion = 28923.615815 eV Total energy + Delta-G solvation = -4338.531164 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.119 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.97929 -38.54274 -37.68342 -36.84880 -35.88208 -35.39024 -33.87684 -33.45569 -32.61591 -32.30309 -30.96607 -28.29877 -26.34316 -25.95326 -25.11509 -23.69403 -22.48753 -21.51159 -20.99496 -20.16810 -18.50165 -18.37030 -17.54617 -17.25136 -16.77012 -16.34411 -15.97080 -15.93488 -15.35971 -15.06921 -14.92365 -14.45493 -14.18022 -14.09410 -13.79588 -13.46081 -13.17568 -13.01916 -12.71382 -12.55119 -12.21768 -12.11812 -11.94208 -11.89043 -11.73066 -11.69397 -11.58716 -11.11708 -11.07044 -10.92230 -10.79491 -10.63549 -10.55934 -10.44340 -10.41847 -10.35798 -10.22386 -10.14697 -9.77755 -9.10219 -8.66534 -8.62369 -7.13650 -6.71468 -4.29261 0.58787 0.91465 2.10966 2.72459 2.95623 3.06852 3.12327 3.24572 3.57129 3.83875 3.87111 4.09383 4.18722 4.71305 4.77683 4.85251 4.89020 4.93534 5.03790 5.09230 5.23648 5.30550 5.40554 5.44093 5.58911 5.59771 5.75197 5.85587 5.95538 5.98236 5.99762 6.02250 6.18579 6.20705 6.27848 6.28671 6.35659 6.51110 6.52400 6.62417 6.80589 6.84473 7.00402 7.09513 7.26304 7.73773 8.12378 8.59339 8.93471 9.38586 10.26259 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.005502 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.617628 B = 5088.172799 C = 7440.053951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.286 4.286 8 H 0.128 0.872 9 N -0.210 5.210 10 N -0.201 5.201 11 C 0.209 3.791 12 C -0.652 4.652 13 S 2.698 3.302 14 O -0.935 6.935 15 O -0.970 6.970 16 N -0.983 5.983 17 C 0.127 3.873 18 C -0.140 4.140 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.123 4.123 22 C 0.121 3.879 23 C 0.027 3.973 24 C -0.225 4.225 25 C 0.174 3.826 26 N -0.457 5.457 27 C 0.537 3.463 28 O -0.595 6.595 29 H 0.279 0.721 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.104 -6.018 5.764 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.174 4.174 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.416 4.416 8 H 0.145 0.855 9 N -0.011 5.011 10 N -0.031 5.031 11 C -0.049 4.049 12 C -0.742 4.742 13 S 2.787 3.213 14 O -0.925 6.925 15 O -0.961 6.961 16 N -0.821 5.821 17 C 0.000 4.000 18 C -0.179 4.179 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.162 4.162 22 C -0.003 4.003 23 C 0.001 3.999 24 C -0.250 4.250 25 C 0.050 3.950 26 N -0.170 5.170 27 C 0.243 3.757 28 O -0.477 6.477 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.131 0.869 42 H 0.169 0.831 43 H 0.167 0.833 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.326 -4.754 5.260 12.526 hybrid contribution 1.450 -0.413 0.153 1.516 sum -8.876 -5.166 5.412 11.609 Atomic orbital electron populations 1.70228 1.05657 1.28551 1.35759 1.25587 0.96049 1.00092 0.95720 0.85673 0.79435 0.79316 0.79029 1.19541 1.19921 1.18746 1.19847 0.92521 0.78800 1.50412 0.85483 1.44762 1.02036 1.05186 1.49117 1.78920 0.93646 1.07135 1.23430 1.20250 0.85746 0.89539 1.09389 1.29882 1.16759 1.04696 1.22900 1.01839 0.73106 0.73232 0.73091 1.93620 1.86461 1.52408 1.60042 1.93525 1.54638 1.61387 1.86527 1.57052 1.73922 1.24478 1.26623 1.21063 0.92686 0.94624 0.91618 1.21229 0.96779 0.97283 1.02638 1.20449 1.00404 0.94961 0.99434 1.21074 0.96078 0.97823 1.00426 1.21689 0.94810 1.00169 0.99561 1.21871 0.95863 0.78983 1.03550 1.20882 0.99166 0.91810 0.88041 1.20599 0.90977 1.00611 1.12799 1.21765 1.00545 0.81160 0.91565 1.43382 1.09611 1.06787 1.57213 1.16315 0.84556 0.81886 0.92909 1.90872 1.11001 1.80687 1.65150 0.91030 0.90810 0.90389 0.91009 0.91156 0.92380 0.92877 0.92262 0.91781 0.92191 0.90788 0.90909 0.86878 0.83149 0.83264 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.10 11.84 55.47 0.66 -18.45 16 2 C 0.04 0.99 5.49 -17.54 -0.10 0.90 16 3 Si 0.94 18.48 29.55 -169.99 -5.02 13.46 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.29 -7.54 10.07 -15.16 -0.15 -7.69 16 8 H 0.13 3.29 7.81 -52.49 -0.41 2.88 16 9 N -0.21 -5.69 3.68 -15.44 -0.06 -5.75 16 10 N -0.20 -5.10 10.07 31.28 0.32 -4.78 16 11 C 0.21 4.75 7.55 -155.60 -1.17 3.57 16 12 C -0.65 -12.30 5.93 -39.26 -0.23 -12.54 16 13 S 2.70 49.17 5.52 -107.50 -0.59 48.57 16 14 O -0.94 -20.59 16.32 -57.17 -0.93 -21.52 16 15 O -0.97 -16.88 15.21 -57.17 -0.87 -17.75 16 16 N -0.98 -15.64 2.55 -113.63 -0.29 -15.93 16 17 C 0.13 1.60 5.20 -4.38 -0.02 1.58 16 18 C -0.14 -1.60 5.67 -28.88 -0.16 -1.76 16 19 C -0.11 -1.24 5.15 -29.79 -0.15 -1.39 16 20 C -0.12 -1.45 5.51 -28.01 -0.15 -1.60 16 21 C -0.12 -1.67 5.71 -27.30 -0.16 -1.83 16 22 C 0.12 2.07 5.83 -2.94 -0.02 2.05 16 23 C 0.03 0.42 9.58 -39.48 -0.38 0.04 16 24 C -0.23 -3.09 9.97 -39.90 -0.40 -3.48 16 25 C 0.17 2.95 10.89 -16.37 -0.18 2.77 16 26 N -0.46 -10.23 2.91 -66.60 -0.19 -10.43 16 27 C 0.54 14.12 8.61 -86.84 -0.75 13.38 16 28 O -0.59 -16.64 17.82 5.18 0.09 -16.55 16 29 H 0.28 6.32 8.31 -40.82 -0.34 5.98 16 30 H 0.07 0.85 7.66 -51.93 -0.40 0.45 16 31 H 0.08 0.88 8.06 -51.93 -0.42 0.47 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.91 7.48 -51.93 -0.39 0.52 16 34 H 0.06 0.58 7.36 -51.93 -0.38 0.20 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.91 7.48 -51.93 -0.39 0.52 16 38 H 0.06 0.74 7.32 -51.93 -0.38 0.36 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.11 2.28 6.66 -51.93 -0.35 1.93 16 42 H 0.15 1.82 7.33 -52.48 -0.38 1.43 16 43 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 44 H 0.16 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -33.42 370.25 -10.93 -44.36 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.59 Total: 5.19 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -4.03 Total: -6.01 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.43 Total: -55.33 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -1.71 Total: -55.82 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.46 kcal Atomic # 16 Polarization: 49.17 SS G_CDS: -0.59 Total: 48.57 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.42 -10.93 -44.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065129334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.311 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds