Wall clock time and date at job start Tue Mar 31 2020 05:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31605 * 1 3 3 Si 1.86799 * 120.00172 * 2 1 4 4 H 1.48502 * 109.47130 * 274.98732 * 3 2 1 5 5 H 1.48506 * 109.47235 * 34.98448 * 3 2 1 6 6 H 1.48497 * 109.47515 * 154.98525 * 3 2 1 7 7 C 1.38541 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00100 * 185.63018 * 7 2 1 9 9 N 1.36932 * 119.99483 * 5.35488 * 7 2 1 10 10 N 1.40173 * 126.22143 * 353.25805 * 9 7 2 11 11 C 1.31988 * 107.74431 * 179.88310 * 10 9 7 12 12 C 1.41197 * 131.95929 * 180.02562 * 11 10 9 13 13 S 1.76204 * 120.31738 * 0.31984 * 12 11 10 14 14 O 1.42093 * 106.40388 * 48.51250 * 13 12 11 15 15 O 1.42100 * 106.40034 * 181.43773 * 13 12 11 16 16 N 1.65598 * 107.21583 * 294.97458 * 13 12 11 17 17 C 1.44578 * 118.64332 * 269.73527 * 16 13 12 18 18 C 1.54313 * 109.90970 * 270.85098 * 17 16 13 19 19 C 1.47093 * 110.29656 * 288.76242 * 18 17 16 20 20 C 1.52569 * 114.32909 * 62.72927 * 19 18 17 21 21 C 1.50884 * 109.35339 * 274.98127 * 20 19 18 22 22 C 1.47612 * 118.64519 * 89.99897 * 16 13 12 23 23 C 1.35993 * 119.36070 * 180.29025 * 12 11 10 24 24 C 1.40652 * 119.75870 * 0.02871 * 23 12 11 25 25 C 1.34779 * 120.48878 * 0.02562 * 24 23 12 26 26 N 1.37205 * 120.68633 * 359.95993 * 25 24 23 27 27 C 1.34812 * 126.21266 * 173.56486 * 9 7 2 28 28 O 1.21712 * 125.98383 * 359.96106 * 27 9 7 29 29 H 0.96996 * 119.99711 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.45015 * 30.76466 * 17 16 13 31 31 H 1.09000 * 109.44911 * 150.68378 * 17 16 13 32 32 H 1.08998 * 109.40246 * 168.46270 * 18 17 16 33 33 H 1.09006 * 109.27496 * 48.97493 * 18 17 16 34 34 H 1.08998 * 108.51061 * 301.47267 * 19 18 17 35 35 H 1.09004 * 108.38676 * 183.89692 * 19 18 17 36 36 H 1.08993 * 109.49086 * 155.01691 * 20 19 18 37 37 H 1.09004 * 109.48742 * 34.94155 * 20 19 18 38 38 H 1.08998 * 109.36389 * 331.69539 * 21 20 19 39 39 H 1.08998 * 109.36334 * 212.07841 * 21 20 19 40 40 H 1.09001 * 108.94923 * 258.55430 * 22 16 13 41 41 H 1.09004 * 108.94471 * 17.27376 * 22 16 13 42 42 H 1.08004 * 120.12175 * 180.02562 * 23 12 11 43 43 H 1.07999 * 119.75780 * 179.97438 * 24 23 12 44 44 H 1.08001 * 119.66133 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3922 2.1072 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5963 1.4121 0.5920 7 6 2.0088 -1.1998 0.0005 8 1 3.0848 -1.2020 0.0923 9 7 1.3286 -2.3831 -0.1096 10 7 -0.0640 -2.5422 -0.0967 11 6 -0.3230 -3.8296 -0.2294 12 6 -1.5376 -4.5478 -0.2808 13 16 -3.0779 -3.6999 -0.1659 14 8 -3.0090 -2.6166 -1.0828 15 8 -4.0894 -4.6968 -0.2152 16 7 -3.1563 -3.0287 1.3459 17 6 -3.7428 -3.8015 2.4178 18 6 -5.2631 -3.5444 2.4801 19 6 -5.5311 -2.1883 2.9829 20 6 -4.9934 -1.0708 2.0942 21 6 -3.5472 -0.8110 2.4374 22 6 -2.6297 -1.6637 1.5423 23 6 -1.5071 -5.9002 -0.4205 24 6 -0.2709 -6.5650 -0.5112 25 6 0.8837 -5.8717 -0.4601 26 7 0.8753 -4.5069 -0.3198 27 6 1.8768 -3.6073 -0.2444 28 8 3.0672 -3.8567 -0.2904 29 1 -0.4849 0.8400 0.0004 30 1 -3.5658 -4.8621 2.2395 31 1 -3.2876 -3.5122 3.3650 32 1 -5.7267 -4.2737 3.1443 33 1 -5.6870 -3.6492 1.4813 34 1 -5.0822 -2.0907 3.9713 35 1 -6.6097 -2.0646 3.0802 36 1 -5.5748 -0.1637 2.2587 37 1 -5.0712 -1.3685 1.0485 38 1 -3.3722 -1.0670 3.4823 39 1 -3.3232 0.2445 2.2832 40 1 -1.6445 -1.7274 2.0042 41 1 -2.5343 -1.1781 0.5711 42 1 -2.4288 -6.4618 -0.4617 43 1 -0.2468 -7.6391 -0.6217 44 1 1.8254 -6.3958 -0.5305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065129334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:34 Heat of formation + Delta-G solvation = -7.238390 kcal Electronic energy + Delta-G solvation = -33263.109375 eV Core-core repulsion = 28923.615815 eV Total energy + Delta-G solvation = -4339.493560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.119 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.73227 -39.61947 -39.31649 -38.35346 -37.76768 -36.90582 -35.56978 -34.56953 -34.26369 -33.37906 -32.66940 -29.94134 -28.07441 -27.07130 -26.21493 -25.29743 -24.12362 -23.21218 -22.10426 -21.21876 -20.19304 -19.89926 -19.07925 -18.64720 -18.32567 -17.85834 -17.75536 -17.21883 -16.95222 -16.66941 -16.06193 -15.91630 -15.79875 -15.42473 -15.24122 -14.58278 -14.40863 -14.33553 -14.21954 -13.70999 -13.59841 -13.54105 -13.45991 -13.39852 -13.15556 -13.13552 -12.98150 -12.87986 -12.71396 -12.43836 -12.20291 -12.08925 -12.03807 -11.85950 -11.54948 -11.47391 -11.42949 -11.38016 -11.17806 -10.99194 -10.39304 -9.88449 -8.85009 -8.49741 -6.26520 -0.79720 -0.51233 0.63285 1.05023 1.32797 1.43415 1.57492 1.71572 1.94596 2.19245 2.28941 2.48660 2.67760 3.00959 3.31072 3.45047 3.71056 3.74061 3.90997 4.02385 4.07071 4.12393 4.18522 4.35247 4.36222 4.43146 4.58034 4.58642 4.77784 4.84951 4.89442 4.93354 4.98722 5.04222 5.13066 5.19922 5.26783 5.31749 5.36012 5.39906 5.46552 5.50646 5.58526 5.60079 5.90809 5.95083 6.28708 6.74266 7.09129 7.50299 8.49259 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.005502 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.617628 B = 5088.172799 C = 7440.053951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.009 3.991 3 Si 1.012 2.988 4 H -0.269 1.269 5 H -0.259 1.259 6 H -0.261 1.261 7 C -0.341 4.341 8 H 0.114 0.886 9 N -0.233 5.233 10 N -0.238 5.238 11 C 0.224 3.776 12 C -0.695 4.695 13 S 2.708 3.292 14 O -0.983 6.983 15 O -0.961 6.961 16 N -0.977 5.977 17 C 0.112 3.888 18 C -0.138 4.138 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.116 4.116 22 C 0.132 3.868 23 C 0.071 3.929 24 C -0.193 4.193 25 C 0.148 3.852 26 N -0.463 5.463 27 C 0.515 3.485 28 O -0.632 6.632 29 H 0.283 0.717 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.198 0.802 43 H 0.217 0.783 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.609 -8.996 7.020 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.203 4.203 3 Si 0.831 3.169 4 H -0.195 1.195 5 H -0.183 1.183 6 H -0.185 1.185 7 C -0.470 4.470 8 H 0.131 0.869 9 N -0.033 5.033 10 N -0.067 5.067 11 C -0.037 4.037 12 C -0.786 4.786 13 S 2.798 3.202 14 O -0.973 6.973 15 O -0.951 6.951 16 N -0.816 5.816 17 C -0.013 4.013 18 C -0.177 4.177 19 C -0.152 4.152 20 C -0.155 4.155 21 C -0.156 4.156 22 C 0.008 3.992 23 C 0.045 3.955 24 C -0.216 4.216 25 C 0.026 3.974 26 N -0.175 5.175 27 C 0.220 3.780 28 O -0.518 6.518 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.215 0.785 43 H 0.233 0.767 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.872 -7.770 6.520 16.388 hybrid contribution 2.001 0.047 -0.259 2.018 sum -10.872 -7.723 6.261 14.732 Atomic orbital electron populations 1.70340 1.06782 1.29423 1.36348 1.26472 0.96896 1.02640 0.94334 0.84691 0.78224 0.74979 0.79013 1.19463 1.18259 1.18506 1.19934 0.92413 0.79979 1.54630 0.86882 1.44924 1.02736 1.05516 1.50132 1.78886 0.92889 1.08967 1.25997 1.20911 0.87077 0.89344 1.06334 1.30098 1.15313 1.06429 1.26744 1.01388 0.72925 0.72721 0.73165 1.93566 1.87093 1.54332 1.62316 1.93521 1.54003 1.60835 1.86728 1.56903 1.73846 1.24062 1.26812 1.21477 0.93723 0.95029 0.91094 1.21258 0.95540 0.98507 1.02438 1.20449 1.01534 0.93812 0.99413 1.21099 0.95335 0.99550 0.99518 1.21668 0.95018 0.99234 0.99643 1.21585 0.95675 0.80025 1.01964 1.21744 1.01866 0.90360 0.81530 1.21428 0.88617 1.03344 1.08200 1.22714 1.03588 0.79091 0.91987 1.43473 1.08368 1.08498 1.57176 1.16550 0.84895 0.82552 0.94015 1.90789 1.12299 1.81461 1.67254 0.90703 0.89214 0.88924 0.87981 0.92896 0.90907 0.91140 0.90620 0.94133 0.90334 0.91050 0.93767 0.90563 0.78540 0.76656 0.79464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.43 11.84 21.59 0.26 -42.17 16 2 C 0.01 0.48 5.49 84.80 0.47 0.95 16 3 Si 1.01 40.01 29.55 68.60 2.03 42.04 16 4 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.34 -19.58 10.07 83.97 0.85 -18.73 16 8 H 0.11 6.47 7.81 -2.91 -0.02 6.45 16 9 N -0.23 -13.54 3.68 -320.96 -1.18 -14.72 16 10 N -0.24 -12.84 10.07 -54.94 -0.55 -13.39 16 11 C 0.22 10.40 7.55 134.06 1.01 11.41 16 12 C -0.70 -25.18 5.93 22.47 0.13 -25.05 16 13 S 2.71 97.41 5.52 -56.49 -0.31 97.10 16 14 O -0.98 -45.16 16.32 -128.00 -2.09 -47.25 16 15 O -0.96 -30.93 15.21 -128.00 -1.95 -32.88 16 16 N -0.98 -30.87 2.55 -513.42 -1.31 -32.18 16 17 C 0.11 2.55 5.20 87.18 0.45 3.01 16 18 C -0.14 -2.72 5.67 29.20 0.17 -2.56 16 19 C -0.11 -2.14 5.15 28.61 0.15 -2.00 16 20 C -0.12 -2.81 5.51 29.76 0.16 -2.64 16 21 C -0.12 -3.17 5.71 30.23 0.17 -3.00 16 22 C 0.13 4.75 5.83 86.49 0.50 5.25 16 23 C 0.07 1.78 9.58 22.34 0.21 2.00 16 24 C -0.19 -4.13 9.97 22.06 0.22 -3.91 16 25 C 0.15 4.61 10.89 83.06 0.90 5.51 16 26 N -0.46 -20.99 2.91 -482.81 -1.41 -22.39 16 27 C 0.51 28.63 8.61 179.03 1.54 30.17 16 28 O -0.63 -37.52 17.82 -4.39 -0.08 -37.60 16 29 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 30 H 0.09 1.75 7.66 -2.39 -0.02 1.73 16 31 H 0.09 1.86 8.06 -2.39 -0.02 1.84 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.24 7.48 -2.38 -0.02 1.22 16 34 H 0.07 1.18 7.36 -2.39 -0.02 1.16 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.04 1.16 7.48 -2.38 -0.02 1.14 16 38 H 0.08 1.83 7.32 -2.39 -0.02 1.82 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 3.34 6.66 -2.38 -0.02 3.32 16 42 H 0.20 3.29 7.33 -2.91 -0.02 3.27 16 43 H 0.22 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.19 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -83.05 370.25 1.39 -81.66 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 1.04 Total: 21.38 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 6.94 Total: 0.39 kcal Atomic # 7 Polarization: -120.66 SS G_CDS: -4.19 Total: -124.85 kcal Atomic # 8 Polarization: -113.61 SS G_CDS: -4.11 Total: -117.73 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: 97.41 SS G_CDS: -0.31 Total: 97.10 kcal Total: -83.05 1.39 -81.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065129334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.423 kcal (2) G-P(sol) polarization free energy of solvation -83.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds