Wall clock time and date at job start Tue Mar 31 2020 05:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31604 * 1 3 3 Si 1.86808 * 120.00049 * 2 1 4 4 H 1.48500 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47062 * 299.99941 * 3 2 1 6 6 H 1.48498 * 109.46711 * 59.99985 * 3 2 1 7 7 C 1.38534 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00514 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99697 * 0.02562 * 7 2 1 10 10 N 1.40171 * 126.21938 * 0.02562 * 9 7 2 11 11 C 1.31994 * 107.74345 * 179.97438 * 10 9 7 12 12 C 1.41190 * 131.95604 * 180.02562 * 11 10 9 13 13 C 1.35994 * 119.35947 * 179.97438 * 12 11 10 14 14 C 1.40654 * 119.75411 * 0.02562 * 13 12 11 15 15 S 1.76209 * 119.75127 * 179.97438 * 14 13 12 16 16 O 1.42105 * 106.39915 * 203.54420 * 15 14 13 17 17 O 1.42099 * 106.40022 * 336.46176 * 15 14 13 18 18 N 1.65594 * 107.21569 * 90.00239 * 15 14 13 19 19 C 1.44582 * 118.64561 * 269.73072 * 18 15 14 20 20 C 1.54311 * 109.90648 * 270.85944 * 19 18 15 21 21 C 1.47087 * 110.29421 * 288.75263 * 20 19 18 22 22 C 1.52569 * 114.32615 * 62.73565 * 21 20 19 23 23 C 1.50882 * 109.35472 * 274.97868 * 22 21 20 24 24 C 1.47604 * 118.64433 * 90.00227 * 18 15 14 25 25 C 1.34778 * 120.49674 * 0.02562 * 14 13 12 26 26 N 1.37201 * 120.67923 * 359.95551 * 25 14 13 27 27 C 1.34804 * 126.21400 * 179.97438 * 9 7 2 28 28 O 1.21716 * 125.98498 * 359.73625 * 27 9 7 29 29 H 0.97004 * 120.00052 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.32026 * 0.02562 * 12 11 10 31 31 H 1.07997 * 120.12542 * 180.02562 * 13 12 11 32 32 H 1.08998 * 109.44401 * 30.76781 * 19 18 15 33 33 H 1.09000 * 109.44769 * 150.68510 * 19 18 15 34 34 H 1.09009 * 109.39551 * 168.46728 * 20 19 18 35 35 H 1.08992 * 109.28547 * 48.97019 * 20 19 18 36 36 H 1.09001 * 108.51593 * 301.48680 * 21 20 19 37 37 H 1.08998 * 108.39424 * 183.90246 * 21 20 19 38 38 H 1.08999 * 109.49010 * 155.01781 * 22 21 20 39 39 H 1.09000 * 109.49269 * 34.94555 * 22 21 20 40 40 H 1.08999 * 109.36918 * 331.69754 * 23 22 21 41 41 H 1.09002 * 109.36537 * 212.07590 * 23 22 21 42 42 H 1.08996 * 108.94694 * 258.55312 * 24 18 15 43 43 H 1.09000 * 108.94535 * 17.26410 * 24 18 15 44 44 H 1.07992 * 119.66115 * 179.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0088 -1.1997 0.0005 8 1 3.0887 -1.1998 0.0010 9 7 1.3240 -2.3856 0.0005 10 7 -0.0694 -2.5374 -0.0005 11 6 -0.3331 -3.8308 -0.0007 12 6 -1.5505 -4.5459 -0.0020 13 6 -1.5251 -5.9056 -0.0024 14 6 -0.2912 -6.5807 -0.0009 15 16 -0.2583 -8.3425 -0.0007 16 8 0.9981 -8.7202 0.5454 17 8 -1.5010 -8.7669 0.5423 18 7 -0.2472 -8.8326 -1.5824 19 6 -1.5111 -9.0672 -2.2442 20 6 -1.9488 -10.5323 -2.0369 21 6 -1.0927 -11.4362 -2.8201 22 6 0.3777 -11.4184 -2.4135 23 6 1.0798 -10.2885 -3.1255 24 6 1.0527 -9.0180 -2.2566 25 6 0.8663 -5.8901 0.0014 26 7 0.8629 -4.5181 0.0015 27 6 1.8677 -3.6192 0.0005 28 8 3.0574 -3.8764 -0.0040 29 1 -0.4850 0.8401 -0.0004 30 1 -2.4929 -4.0182 -0.0036 31 1 -2.4489 -6.4650 -0.0038 32 1 -2.2684 -8.4043 -1.8256 33 1 -1.4047 -8.8684 -3.3106 34 1 -2.9845 -10.6494 -2.3563 35 1 -1.8691 -10.7857 -0.9799 36 1 -1.1644 -11.1566 -3.8712 37 1 -1.4708 -12.4522 -2.7069 38 1 0.8424 -12.3655 -2.6878 39 1 0.4554 -11.2734 -1.3360 40 1 0.5771 -10.0899 -4.0721 41 1 2.1144 -10.5713 -3.3201 42 1 1.2499 -8.1524 -2.8891 43 1 1.8357 -9.0901 -1.5019 44 1 1.8060 -6.4222 0.0030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065198767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:15 Heat of formation + Delta-G solvation = -10.880858 kcal Electronic energy + Delta-G solvation = -31707.457474 eV Core-core repulsion = 27367.805965 eV Total energy + Delta-G solvation = -4339.651509 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.119 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.88922 -39.65658 -39.41581 -38.50193 -37.94632 -37.00783 -35.68244 -34.60481 -34.24819 -33.40871 -32.84740 -30.15612 -28.19910 -27.12807 -26.30036 -25.38472 -24.23253 -23.09420 -22.16638 -21.24253 -20.45490 -20.19910 -19.17988 -18.67339 -18.32669 -17.99034 -17.92079 -17.30970 -16.99130 -16.54494 -16.07908 -16.00679 -15.91294 -15.62914 -15.30365 -14.69451 -14.65365 -14.42946 -14.23991 -13.78650 -13.64720 -13.63310 -13.46802 -13.33936 -13.27507 -13.16363 -13.05134 -12.96545 -12.82146 -12.70707 -12.25381 -12.14326 -12.08872 -11.88125 -11.59218 -11.53231 -11.44949 -11.38034 -11.19383 -11.17240 -10.55686 -9.97329 -8.89153 -8.62278 -6.39381 -0.79802 -0.53784 0.19393 0.87605 1.28648 1.39061 1.56154 1.71706 1.86218 2.12519 2.25433 2.44494 2.62126 2.91025 3.03803 3.24268 3.59654 3.65244 3.88505 4.00356 4.06313 4.07694 4.12896 4.17775 4.29245 4.33237 4.55882 4.71759 4.77622 4.81455 4.83671 4.89455 4.95631 4.96660 5.09845 5.13291 5.26619 5.30077 5.31275 5.38453 5.43079 5.44863 5.47826 5.59239 5.80085 5.82588 6.17323 6.62287 6.98153 7.36054 8.39298 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.021700 B = 0.002586 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.008405 B =10823.323430 C =11224.917057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.004 3.996 3 Si 1.021 2.979 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.342 4.342 8 H 0.119 0.881 9 N -0.234 5.234 10 N -0.246 5.246 11 C 0.189 3.811 12 C -0.099 4.099 13 C -0.026 4.026 14 C -0.723 4.723 15 S 2.721 3.279 16 O -0.982 6.982 17 O -0.954 6.954 18 N -0.977 5.977 19 C 0.112 3.888 20 C -0.143 4.143 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.119 4.119 24 C 0.098 3.902 25 C 0.233 3.767 26 N -0.463 5.463 27 C 0.518 3.482 28 O -0.623 6.623 29 H 0.285 0.715 30 H 0.180 0.820 31 H 0.193 0.807 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 -19.503 -8.307 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.207 4.207 3 Si 0.839 3.161 4 H -0.182 1.182 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.470 4.470 8 H 0.136 0.864 9 N -0.035 5.035 10 N -0.074 5.074 11 C -0.069 4.069 12 C -0.121 4.121 13 C -0.052 4.052 14 C -0.813 4.813 15 S 2.808 3.192 16 O -0.972 6.972 17 O -0.944 6.944 18 N -0.817 5.817 19 C -0.013 4.013 20 C -0.182 4.182 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.158 4.158 24 C -0.026 4.026 25 C 0.106 3.894 26 N -0.174 5.174 27 C 0.223 3.777 28 O -0.508 6.508 29 H 0.095 0.905 30 H 0.197 0.803 31 H 0.210 0.790 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.417 -18.781 -7.610 21.579 hybrid contribution 0.974 0.983 0.057 1.385 sum -6.444 -17.798 -7.553 20.380 Atomic orbital electron populations 1.70345 1.07352 1.29727 1.37731 1.26663 0.96921 1.03266 0.93848 0.84516 0.78240 0.74156 0.79170 1.18238 1.18409 1.18633 1.20131 0.92303 0.79758 1.54772 0.86352 1.44957 1.02806 1.04915 1.50827 1.78842 0.92780 1.10380 1.25426 1.22618 0.88744 0.88903 1.06673 1.20481 0.93482 0.93762 1.04380 1.20779 0.96598 0.92952 0.94828 1.30987 0.97923 1.28048 1.24311 1.01312 0.72749 0.71956 0.73155 1.93543 1.44764 1.81630 1.77310 1.93554 1.44403 1.79602 1.76850 1.56993 1.12836 1.80568 1.31309 1.21507 0.82509 0.97002 1.00276 1.21263 1.00945 0.95138 1.00830 1.20468 0.94417 0.99867 1.00775 1.21132 0.96201 0.98813 0.99902 1.21690 1.02402 0.93058 0.98675 1.22049 0.82510 1.00141 0.97882 1.21739 1.00811 0.80044 0.86778 1.43548 1.09418 1.07177 1.57280 1.16580 0.84887 0.82381 0.93832 1.90815 1.12279 1.81340 1.66360 0.90532 0.80319 0.79034 0.89045 0.87835 0.88772 0.92983 0.90753 0.92089 0.90898 0.93693 0.89836 0.89580 0.90573 0.89756 0.80116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.36 11.82 21.59 0.26 -44.10 16 2 C 0.00 0.20 5.49 84.80 0.47 0.66 16 3 Si 1.02 39.51 29.55 68.60 2.03 41.54 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 6 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.34 -19.66 10.08 83.97 0.85 -18.81 16 8 H 0.12 6.75 7.80 -2.91 -0.02 6.72 16 9 N -0.23 -13.68 3.68 -320.96 -1.18 -14.86 16 10 N -0.25 -13.31 10.48 -54.94 -0.58 -13.88 16 11 C 0.19 8.55 7.86 134.05 1.05 9.60 16 12 C -0.10 -3.19 10.11 22.47 0.23 -2.96 16 13 C -0.03 -0.68 9.53 22.34 0.21 -0.47 16 14 C -0.72 -20.58 5.94 22.07 0.13 -20.45 16 15 S 2.72 65.65 5.56 -56.49 -0.31 65.34 16 16 O -0.98 -29.24 15.56 -128.00 -1.99 -31.23 16 17 O -0.95 -24.39 15.53 -128.00 -1.99 -26.38 16 18 N -0.98 -17.09 2.55 -513.43 -1.31 -18.40 16 19 C 0.11 1.44 5.20 87.18 0.45 1.89 16 20 C -0.14 -1.78 5.67 29.20 0.17 -1.62 16 21 C -0.12 -1.28 5.15 28.61 0.15 -1.13 16 22 C -0.12 -1.59 5.51 29.76 0.16 -1.42 16 23 C -0.12 -1.39 5.71 30.22 0.17 -1.21 16 24 C 0.10 1.58 6.24 86.49 0.54 2.12 16 25 C 0.23 8.42 10.36 83.06 0.86 9.28 16 26 N -0.46 -21.44 2.91 -482.82 -1.41 -22.84 16 27 C 0.52 29.04 8.61 179.03 1.54 30.58 16 28 O -0.62 -37.30 17.81 -4.40 -0.08 -37.38 16 29 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 30 H 0.18 4.69 8.06 -2.91 -0.02 4.66 16 31 H 0.19 3.27 7.65 -2.91 -0.02 3.25 16 32 H 0.09 1.02 7.67 -2.39 -0.02 1.00 16 33 H 0.10 0.93 8.06 -2.39 -0.02 0.91 16 34 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.05 0.87 7.48 -2.39 -0.02 0.85 16 36 H 0.07 0.61 7.36 -2.39 -0.02 0.59 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.04 0.76 7.48 -2.39 -0.02 0.74 16 40 H 0.08 0.75 7.32 -2.39 -0.02 0.73 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.56 6.66 -2.39 -0.02 1.54 16 44 H 0.18 6.05 7.50 -2.91 -0.02 6.03 16 Total: -1.00 -80.14 370.29 1.46 -78.69 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 1.04 Total: 17.46 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 6.98 Total: 6.05 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -4.22 Total: -114.08 kcal Atomic # 8 Polarization: -90.93 SS G_CDS: -4.06 Total: -94.99 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: 65.65 SS G_CDS: -0.31 Total: 65.34 kcal Total: -80.14 1.46 -78.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065198767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.806 kcal (2) G-P(sol) polarization free energy of solvation -80.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds