Wall clock time and date at job start Tue Mar 31 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38128 * 120.03784 * 2 1 4 4 C 1.38263 * 120.07381 * 179.97438 * 3 2 1 5 5 C 1.38307 * 120.14795 * 0.02562 * 4 3 2 6 6 C 1.38077 * 120.07917 * 359.74450 * 5 4 3 7 7 C 1.38892 * 120.03441 * 179.97438 * 2 1 3 8 8 N 1.39671 * 120.07887 * 359.97438 * 7 2 1 9 9 C 1.46494 * 120.00110 * 179.97438 * 8 7 2 10 10 C 1.53121 * 109.52457 * 205.00102 * 9 8 7 11 11 C 1.53033 * 109.27977 * 182.44115 * 10 9 8 12 12 N 1.46844 * 109.52510 * 59.18291 * 11 10 9 13 13 C 1.46894 * 111.00170 * 174.16021 * 12 11 10 14 14 C 1.50698 * 109.47238 * 294.20874 * 13 12 11 15 15 C 1.38297 * 119.92843 * 269.72538 * 14 13 12 16 16 C 1.38108 * 120.06801 * 179.72304 * 15 14 13 17 17 C 1.38881 * 119.92817 * 0.55013 * 16 15 14 18 18 O 1.35744 * 120.06661 * 179.74920 * 17 16 15 19 19 C 1.34835 * 117.00043 * 174.44043 * 18 17 16 20 20 H 1.07999 * 119.99700 * 5.05768 * 19 18 17 21 21 C 1.38654 * 120.00073 * 185.05361 * 19 18 17 22 22 N 1.31556 * 120.00117 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99740 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47273 * 60.00002 * 23 21 19 25 25 H 1.48505 * 109.46807 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46977 * 299.99958 * 23 21 19 27 27 C 1.38879 * 119.86009 * 359.72518 * 17 16 15 28 28 C 1.38095 * 119.93435 * 359.97438 * 27 17 16 29 29 C 1.46851 * 111.19387 * 298.25662 * 12 11 10 30 30 C 1.53036 * 109.52184 * 61.74190 * 29 12 11 31 31 H 1.09004 * 109.46711 * 270.01814 * 1 2 3 32 32 H 1.09000 * 109.47304 * 30.01897 * 1 2 3 33 33 H 1.09003 * 109.47170 * 150.02321 * 1 2 3 34 34 H 1.07996 * 119.96099 * 359.97438 * 3 2 1 35 35 H 1.07998 * 119.92135 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.95619 * 179.97438 * 5 4 3 37 37 H 1.07996 * 120.04256 * 180.27454 * 6 5 4 38 38 H 0.97004 * 119.99949 * 0.02562 * 8 7 2 39 39 H 1.09002 * 109.57847 * 325.15676 * 9 8 7 40 40 H 1.09003 * 109.50526 * 302.38386 * 10 9 8 41 41 H 1.09004 * 109.50270 * 62.50155 * 10 9 8 42 42 H 1.09007 * 109.46229 * 179.19846 * 11 10 9 43 43 H 1.09002 * 109.46156 * 299.15956 * 11 10 9 44 44 H 1.09005 * 109.47273 * 54.21044 * 13 12 11 45 45 H 1.08997 * 109.47351 * 174.20728 * 13 12 11 46 46 H 1.08003 * 119.97045 * 0.02562 * 15 14 13 47 47 H 1.08000 * 120.03346 * 180.27354 * 16 15 14 48 48 H 0.96996 * 120.00097 * 179.97438 * 22 21 19 49 49 H 1.07998 * 120.03113 * 179.97438 * 27 17 16 50 50 H 1.08000 * 119.96581 * 180.02562 * 28 27 17 51 51 H 1.08997 * 109.46018 * 301.72580 * 29 12 11 52 52 H 1.08997 * 109.45980 * 181.75734 * 29 12 11 53 53 H 1.09003 * 109.49816 * 180.87688 * 30 29 12 54 54 H 1.08998 * 109.50626 * 60.76487 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1958 0.0000 4 6 3.5811 1.1966 0.0005 5 6 4.2765 0.0011 0.0005 6 6 3.5916 -1.1978 0.0053 7 6 2.2022 -1.2024 0.0005 8 7 1.5063 -2.4134 0.0016 9 6 2.2412 -3.6806 0.0016 10 6 1.3660 -4.7798 -0.6071 11 6 2.1155 -6.1127 -0.5488 12 7 2.4361 -6.4348 0.8476 13 6 3.0329 -7.7727 0.9556 14 6 2.0119 -8.8110 0.5679 15 6 1.1860 -9.3601 1.5317 16 6 0.2454 -10.3078 1.1787 17 6 0.1372 -10.7175 -0.1439 18 8 -0.7829 -11.6524 -0.4932 19 6 -0.9142 -11.9208 -1.8080 20 1 -0.2469 -11.4614 -2.5221 21 6 -1.9059 -12.7866 -2.2432 22 7 -2.7184 -13.3467 -1.3732 23 14 -2.0873 -13.1589 -4.0647 24 1 -0.8317 -13.7671 -4.5731 25 1 -3.2128 -14.1064 -4.2665 26 1 -2.3614 -11.8996 -4.8023 27 6 0.9720 -10.1683 -1.1084 28 6 1.9063 -9.2166 -0.7501 29 6 3.3146 -5.4173 1.4389 30 6 2.6009 -4.0636 1.4398 31 1 -0.3633 0.0003 1.0277 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6585 2.1310 -0.0004 35 1 4.1192 2.1330 0.0001 36 1 5.3565 0.0054 0.0005 37 1 4.1352 -2.1310 0.0098 38 1 0.5362 -2.4153 0.0016 39 1 3.1531 -3.5740 -0.5859 40 1 0.4370 -4.8596 -0.0427 41 1 1.1419 -4.5334 -1.6451 42 1 1.4894 -6.9001 -0.9686 43 1 3.0377 -6.0364 -1.1250 44 1 3.8927 -7.8419 0.2891 45 1 3.3546 -7.9452 1.9826 46 1 1.2733 -9.0440 2.5608 47 1 -0.4023 -10.7330 1.9311 48 1 -3.4124 -13.9521 -1.6777 49 1 0.8905 -10.4852 -2.1376 50 1 2.5554 -8.7889 -1.4998 51 1 4.2311 -5.3443 0.8534 52 1 3.5593 -5.6996 2.4628 53 1 3.2591 -3.3056 1.8645 54 1 1.6913 -4.1321 2.0365 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065501185.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:30 Heat of formation + Delta-G solvation = 8.546093 kcal Electronic energy + Delta-G solvation = -31866.926745 eV Core-core repulsion = 27767.880233 eV Total energy + Delta-G solvation = -4099.046512 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 366.205 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.06163 -40.68946 -39.74161 -38.27386 -36.47664 -34.37642 -33.88867 -32.96981 -32.05300 -31.63507 -30.83277 -29.44716 -27.65964 -27.44537 -26.19168 -24.26592 -24.04117 -23.46535 -22.41567 -22.01401 -21.74526 -20.68421 -19.81777 -18.79833 -18.18178 -17.49812 -16.73467 -16.52386 -16.43409 -16.21577 -16.07041 -15.68141 -15.50547 -15.31482 -15.24211 -15.09535 -14.85002 -14.61918 -14.49766 -14.27442 -14.11562 -13.98542 -13.80409 -13.58175 -13.25793 -13.20857 -12.98936 -12.92643 -12.83830 -12.53969 -12.37164 -12.26511 -12.15938 -12.12595 -12.07340 -11.97296 -11.84062 -11.60424 -11.37514 -11.15795 -10.82270 -10.76610 -9.73941 -9.57375 -9.22188 -8.86099 -8.46338 -8.21750 -6.14478 0.57217 0.62312 0.70093 0.78661 1.34389 1.44986 1.50615 2.17852 2.48388 2.75041 3.02391 3.03895 3.32707 3.54825 3.73797 3.87409 3.98218 4.04490 4.05578 4.07115 4.15313 4.22733 4.29972 4.33831 4.39761 4.44251 4.48649 4.51206 4.58984 4.63933 4.69959 4.74081 4.77516 4.80608 4.83305 4.84518 4.88535 4.95080 5.02248 5.07041 5.11222 5.13794 5.16383 5.16536 5.32018 5.34040 5.37414 5.49989 5.60112 5.70642 5.73169 5.81359 5.82881 6.03754 6.06449 6.15085 6.22699 6.30191 6.49689 6.85541 6.98276 7.80083 8.76683 Molecular weight = 366.20amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.001684 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.854830 B =16627.605940 C =17624.577888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.181 4.181 3 C -0.084 4.084 4 C -0.189 4.189 5 C -0.086 4.086 6 C -0.209 4.209 7 C 0.208 3.792 8 N -0.740 5.740 9 C 0.160 3.840 10 C -0.116 4.116 11 C 0.057 3.943 12 N -0.543 5.543 13 C 0.116 3.884 14 C -0.151 4.151 15 C -0.047 4.047 16 C -0.206 4.206 17 C 0.113 3.887 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.101 0.899 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.017 2.983 24 H -0.257 1.257 25 H -0.272 1.272 26 H -0.258 1.258 27 C -0.243 4.243 28 C -0.061 4.061 29 C 0.060 3.940 30 C -0.120 4.120 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.401 0.599 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.041 0.959 44 H 0.048 0.952 45 H 0.093 0.907 46 H 0.144 0.856 47 H 0.110 0.890 48 H 0.272 0.728 49 H 0.116 0.884 50 H 0.134 0.866 51 H 0.041 0.959 52 H 0.086 0.914 53 H 0.072 0.928 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.659 27.892 2.759 31.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.185 4.185 3 C -0.102 4.102 4 C -0.209 4.209 5 C -0.105 4.105 6 C -0.232 4.232 7 C 0.104 3.896 8 N -0.369 5.369 9 C 0.054 3.946 10 C -0.154 4.154 11 C -0.071 4.071 12 N -0.268 5.268 13 C -0.011 4.011 14 C -0.152 4.152 15 C -0.066 4.066 16 C -0.226 4.226 17 C 0.063 3.937 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.182 1.182 25 H -0.197 1.197 26 H -0.182 1.182 27 C -0.262 4.262 28 C -0.079 4.079 29 C -0.068 4.068 30 C -0.160 4.160 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.237 0.763 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.162 0.838 47 H 0.128 0.872 48 H 0.081 0.919 49 H 0.134 0.866 50 H 0.152 0.848 51 H 0.060 0.940 52 H 0.104 0.896 53 H 0.091 0.909 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.021 27.455 3.166 30.990 hybrid contribution -0.241 -0.769 -1.146 1.401 sum 13.780 26.686 2.020 30.101 Atomic orbital electron populations 1.20601 0.90509 1.02768 1.02184 1.19663 0.96680 0.91967 1.10220 1.21056 0.94519 0.97198 0.97477 1.21141 0.94362 0.98520 1.06893 1.21145 1.00368 0.91968 0.97014 1.20831 0.92261 0.99144 1.10965 1.17840 0.91678 0.85950 0.94107 1.44856 1.08244 1.02039 1.81779 1.20886 0.95117 0.82561 0.96025 1.21756 0.99072 0.93372 1.01243 1.22039 0.99154 0.96910 0.88998 1.61907 1.45354 1.01690 1.17872 1.20795 0.92569 0.85661 1.02041 1.19572 1.01540 1.01282 0.92802 1.20831 0.92497 0.93248 1.00010 1.20463 1.04674 1.04154 0.93284 1.19937 0.89793 0.89053 0.94912 1.83941 1.52043 1.50481 1.27649 1.21760 1.17638 1.28807 0.80692 0.88180 1.26578 0.94280 0.95600 1.05633 1.70179 1.18877 1.29957 1.36888 0.84667 0.78832 0.78939 0.73905 1.18158 1.19654 1.18206 1.21205 1.01418 1.04064 0.99505 1.20902 0.96086 0.94631 0.96300 1.22077 0.93524 0.90810 1.00372 1.21973 1.01082 0.95945 0.96967 0.91421 0.90738 0.92186 0.84894 0.85068 0.84823 0.85795 0.76267 0.90575 0.91602 0.90760 0.91346 0.94041 0.93409 0.88844 0.83815 0.87221 0.91897 0.86577 0.84812 0.94040 0.89610 0.90893 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.57 71.24 0.68 -0.67 16 2 C -0.18 -3.03 5.90 -19.73 -0.12 -3.15 16 3 C -0.08 -1.29 9.70 22.25 0.22 -1.08 16 4 C -0.19 -2.82 10.04 22.29 0.22 -2.60 16 5 C -0.09 -1.33 10.04 22.25 0.22 -1.10 16 6 C -0.21 -3.56 8.89 22.40 0.20 -3.37 16 7 C 0.21 3.69 6.62 38.22 0.25 3.94 16 8 N -0.74 -11.95 5.15 -318.59 -1.64 -13.59 16 9 C 0.16 2.52 2.21 45.07 0.10 2.62 16 10 C -0.12 -2.11 5.57 30.65 0.17 -1.94 16 11 C 0.06 1.18 5.15 86.32 0.44 1.63 16 12 N -0.54 -11.07 4.65 -900.95 -4.19 -15.26 16 13 C 0.12 2.49 5.12 85.56 0.44 2.92 16 14 C -0.15 -4.50 4.89 -19.84 -0.10 -4.60 16 15 C -0.05 -1.58 9.69 22.25 0.22 -1.36 16 16 C -0.21 -8.84 9.99 22.39 0.22 -8.61 16 17 C 0.11 5.66 6.65 22.58 0.15 5.81 16 18 O -0.23 -14.24 9.76 -22.73 -0.22 -14.46 16 19 C -0.41 -24.16 9.49 67.92 0.64 -23.52 16 20 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 21 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 22 N -0.92 -56.87 13.67 21.61 0.30 -56.58 16 23 Si 1.02 42.96 29.55 68.60 2.03 44.99 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 27 C -0.24 -10.45 9.17 22.39 0.21 -10.25 16 28 C -0.06 -2.02 7.86 22.25 0.17 -1.84 16 29 C 0.06 0.94 5.46 86.32 0.47 1.41 16 30 C -0.12 -1.88 5.62 30.64 0.17 -1.71 16 31 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 33 H 0.06 0.75 6.55 -2.39 -0.02 0.74 16 34 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.13 1.49 8.06 -2.91 -0.02 1.46 16 37 H 0.12 1.90 6.09 -2.91 -0.02 1.88 16 38 H 0.40 6.07 6.60 -92.71 -0.61 5.46 16 39 H 0.08 1.21 6.49 -2.39 -0.02 1.19 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.07 1.75 5.74 -2.38 -0.01 1.73 16 43 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.05 0.93 8.07 -2.38 -0.02 0.91 16 45 H 0.09 1.73 7.93 -2.39 -0.02 1.71 16 46 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 47 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 48 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 49 H 0.12 5.11 5.64 -2.91 -0.02 5.10 16 50 H 0.13 3.60 7.95 -2.91 -0.02 3.58 16 51 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.09 1.21 8.02 -2.39 -0.02 1.19 16 53 H 0.07 1.09 7.71 -2.39 -0.02 1.07 16 54 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -70.53 424.75 2.02 -68.51 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.29 Total: 34.72 kcal Atomic # 6 Polarization: -53.78 SS G_CDS: 5.46 Total: -48.32 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -5.53 Total: -85.42 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.22 Total: -14.46 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -70.53 2.02 -68.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065501185.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.052 kcal (2) G-P(sol) polarization free energy of solvation -70.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds