Wall clock time and date at job start Tue Mar 31 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99599 * 2 1 4 4 H 1.48498 * 109.46882 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47113 * 299.99852 * 3 2 1 6 6 H 1.48500 * 109.47181 * 60.00040 * 3 2 1 7 7 C 1.37872 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00071 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47321 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00231 * 89.99608 * 10 9 7 12 12 O 1.21284 * 119.99823 * 185.06135 * 11 10 9 13 13 C 1.50696 * 119.99914 * 5.07050 * 11 10 9 14 14 O 1.42902 * 109.47115 * 183.89823 * 13 11 10 15 15 C 1.42901 * 114.00219 * 180.02562 * 14 13 11 16 16 C 1.50691 * 109.47172 * 179.97438 * 15 14 13 17 17 C 1.38236 * 120.00973 * 0.02562 * 16 15 14 18 18 C 1.38217 * 120.01451 * 179.74681 * 17 16 15 19 19 C 1.38264 * 120.03021 * 0.24677 * 18 17 16 20 20 C 1.38198 * 120.00644 * 0.02562 * 19 18 17 21 21 C 1.38333 * 120.00869 * 180.27216 * 16 15 14 22 22 Cl 1.73609 * 120.01235 * 0.02562 * 21 16 15 23 23 C 1.46506 * 120.00009 * 270.00297 * 10 9 7 24 24 C 1.53179 * 109.53943 * 237.68368 * 23 10 9 25 25 C 1.53093 * 109.15863 * 183.14965 * 24 23 10 26 26 O 1.42904 * 109.41971 * 57.60790 * 25 24 23 27 27 C 1.42909 * 114.09445 * 298.84476 * 26 25 24 28 28 C 1.53094 * 109.41778 * 61.15344 * 27 26 25 29 29 H 0.96997 * 120.00517 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.46907 * 60.00063 * 9 7 2 31 31 H 1.09006 * 109.46736 * 300.00254 * 9 7 2 32 32 H 1.08995 * 109.47345 * 63.89565 * 13 11 10 33 33 H 1.09003 * 109.46729 * 303.89429 * 13 11 10 34 34 H 1.09001 * 109.47035 * 59.99327 * 15 14 13 35 35 H 1.08998 * 109.46533 * 299.99683 * 15 14 13 36 36 H 1.08003 * 119.99274 * 0.02562 * 17 16 15 37 37 H 1.08000 * 119.98970 * 180.23141 * 18 17 16 38 38 H 1.07998 * 119.99775 * 180.02562 * 19 18 17 39 39 H 1.08003 * 120.00134 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.53913 * 357.94195 * 23 10 9 41 41 H 1.08998 * 109.52140 * 303.05082 * 24 23 10 42 42 H 1.08994 * 109.52433 * 63.24472 * 24 23 10 43 43 H 1.09004 * 109.48141 * 297.62127 * 25 24 23 44 44 H 1.09000 * 109.48345 * 177.58713 * 25 24 23 45 45 H 1.09005 * 109.47835 * 301.17232 * 27 26 25 46 46 H 1.08996 * 109.49107 * 181.14959 * 27 26 25 47 47 H 1.09002 * 109.52076 * 182.48690 * 28 27 26 48 48 H 1.08992 * 109.51854 * 62.29804 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6412 -4.1248 1.1667 12 8 3.4975 -4.9837 1.1686 13 6 2.0669 -3.6304 2.4692 14 8 2.7503 -4.2539 3.5583 15 6 2.2795 -3.8523 4.8464 16 6 3.0658 -4.5680 5.9142 17 6 4.0661 -5.4538 5.5597 18 6 4.7909 -6.1063 6.5391 19 6 4.5126 -5.8775 7.8740 20 6 3.5090 -4.9965 8.2296 21 6 2.7833 -4.3426 7.2496 22 17 1.5225 -3.2357 7.6957 23 6 2.6793 -4.1693 -1.2693 24 6 2.3528 -5.6648 -1.3272 25 6 2.9230 -6.2538 -2.6201 26 8 4.3321 -6.0207 -2.6676 27 6 4.6952 -4.6386 -2.6640 28 6 4.1963 -3.9846 -1.3728 29 1 -0.4851 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6248 -2.5570 0.8897 32 1 1.0065 -3.8781 2.5160 33 1 2.1907 -2.5493 2.5337 34 1 1.2235 -4.1050 4.9422 35 1 2.4073 -2.7759 4.9605 36 1 4.2843 -5.6326 4.5172 37 1 5.5748 -6.7954 6.2617 38 1 5.0795 -6.3873 8.6388 39 1 3.2914 -4.8181 9.2723 40 1 2.1920 -3.6561 -2.0983 41 1 2.7991 -6.1684 -0.4697 42 1 1.2718 -5.8026 -1.3098 43 1 2.4467 -5.7779 -3.4774 44 1 2.7310 -7.3265 -2.6466 45 1 4.2421 -4.1415 -3.5218 46 1 5.7798 -4.5474 -2.7222 47 1 4.4336 -2.9208 -1.3881 48 1 4.6798 -4.4544 -0.5163 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065515878.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:24 Heat of formation + Delta-G solvation = -110.713359 kcal Electronic energy + Delta-G solvation = -31255.025820 eV Core-core repulsion = 26914.823224 eV Total energy + Delta-G solvation = -4340.202596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.96960 -39.56971 -38.31452 -37.07697 -36.55076 -35.10879 -33.11579 -32.19220 -31.61084 -30.82609 -30.79253 -27.86875 -27.19491 -25.82615 -23.92298 -23.25499 -23.00279 -22.62951 -21.53415 -20.36243 -18.56699 -17.28790 -16.85407 -16.67242 -16.14032 -16.09176 -15.84700 -15.72288 -15.41242 -15.06042 -14.56375 -14.50568 -14.32310 -14.11848 -14.07296 -13.85338 -13.65447 -13.26048 -13.12535 -12.55707 -12.38813 -12.13337 -11.92720 -11.86389 -11.73628 -11.65418 -11.62008 -11.29693 -11.15610 -11.09108 -10.90053 -10.84213 -10.77754 -10.54989 -10.34806 -9.95164 -9.75545 -9.62358 -9.40097 -8.95840 -8.80082 -8.74205 -8.61872 -7.79647 -6.27900 -4.36099 1.00350 1.16677 1.99655 3.15650 3.19085 3.25308 3.30709 3.34045 3.50912 4.07239 4.17576 4.28471 4.63861 4.79976 4.89608 5.03025 5.06918 5.14500 5.18716 5.27361 5.32077 5.38487 5.42813 5.44858 5.50716 5.56837 5.60143 5.65231 5.71792 5.78459 5.85776 5.90199 5.90902 5.98780 6.07463 6.27743 6.28600 6.34476 6.35826 6.61718 6.63967 6.71005 6.75786 7.02102 7.24744 7.42966 7.51198 7.67515 7.94219 8.22737 8.70471 8.94130 9.33087 10.78547 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.007333 B = 0.003103 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3817.443829 B = 9020.277552 C =11900.493404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.235 3.765 10 N -0.592 5.592 11 C 0.523 3.477 12 O -0.546 6.546 13 C 0.047 3.953 14 O -0.364 6.364 15 C 0.099 3.901 16 C -0.073 4.073 17 C -0.081 4.081 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.034 4.034 22 Cl -0.070 7.070 23 C 0.162 3.838 24 C -0.175 4.175 25 C 0.069 3.931 26 O -0.385 6.385 27 C 0.067 3.933 28 C -0.172 4.172 29 H 0.266 0.734 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.149 0.851 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 -9.833 8.797 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.115 3.885 10 N -0.323 5.323 11 C 0.310 3.690 12 O -0.425 6.425 13 C -0.032 4.032 14 O -0.283 6.283 15 C 0.023 3.977 16 C -0.074 4.074 17 C -0.099 4.099 18 C -0.135 4.135 19 C -0.132 4.132 20 C -0.133 4.133 21 C -0.061 4.061 22 Cl -0.041 7.041 23 C 0.058 3.942 24 C -0.213 4.213 25 C -0.008 4.008 26 O -0.304 6.304 27 C -0.010 4.010 28 C -0.210 4.210 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.166 0.834 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.471 -10.312 8.802 14.276 hybrid contribution -0.381 1.830 0.132 1.874 sum 4.090 -8.482 8.934 12.980 Atomic orbital electron populations 1.69922 1.06004 1.27347 1.49548 1.24940 0.94842 0.99322 0.94592 0.86481 0.80225 0.83224 0.77851 1.19581 1.20772 1.20759 1.21541 0.93735 0.90343 1.52248 0.91876 1.19510 0.87461 0.82754 0.98739 1.48185 1.45607 1.34835 1.03708 1.19913 0.82271 0.81829 0.84955 1.90572 1.31679 1.32887 1.87375 1.22324 0.96104 0.99110 0.85622 1.87854 1.60350 1.67578 1.12483 1.21213 0.96529 0.97924 0.82048 1.19572 0.97813 0.98344 0.91643 1.21208 0.93386 0.93950 1.01313 1.21332 0.99731 0.99694 0.92747 1.21120 0.97376 0.98087 0.96604 1.20949 0.96221 0.97336 0.98748 1.20681 0.94687 0.97286 0.93422 1.98375 1.51146 1.61665 1.92935 1.20814 0.94183 0.92601 0.86580 1.22659 1.01244 0.97113 1.00321 1.22479 0.81622 1.00618 0.96124 1.87884 1.22836 1.24964 1.94732 1.22540 1.00174 0.81781 0.96526 1.22631 0.96710 1.01948 0.99746 0.92475 0.94481 0.94512 0.90665 0.88810 0.91389 0.91097 0.83362 0.85313 0.85286 0.85011 0.89720 0.88820 0.91352 0.93531 0.89233 0.93504 0.89206 0.90623 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.58 13.29 55.43 0.74 -22.84 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -13.38 9.30 -34.44 -0.32 -13.70 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.24 5.26 4.89 -5.19 -0.03 5.23 16 10 N -0.59 -11.83 2.41 -167.26 -0.40 -12.23 16 11 C 0.52 10.57 7.14 -10.99 -0.08 10.49 16 12 O -0.55 -11.89 12.68 -14.33 -0.18 -12.07 16 13 C 0.05 0.86 4.85 36.00 0.17 1.03 16 14 O -0.36 -6.33 8.36 -55.11 -0.46 -6.79 16 15 C 0.10 1.44 5.30 36.00 0.19 1.63 16 16 C -0.07 -0.99 5.88 -104.59 -0.62 -1.60 16 17 C -0.08 -1.06 9.38 -39.59 -0.37 -1.43 16 18 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 19 C -0.11 -1.07 10.05 -39.59 -0.40 -1.47 16 20 C -0.11 -1.16 9.83 -39.55 -0.39 -1.55 16 21 C -0.03 -0.41 6.31 -39.50 -0.25 -0.66 16 22 Cl -0.07 -0.82 27.99 -51.86 -1.45 -2.27 16 23 C 0.16 2.91 2.64 -67.75 -0.18 2.73 16 24 C -0.17 -2.81 5.36 -26.59 -0.14 -2.95 16 25 C 0.07 0.96 6.84 37.21 0.25 1.21 16 26 O -0.39 -6.11 10.77 -35.23 -0.38 -6.49 16 27 C 0.07 0.99 6.84 37.21 0.25 1.24 16 28 C -0.17 -3.00 5.41 -26.59 -0.14 -3.14 16 29 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.04 0.87 7.91 -51.93 -0.41 0.46 16 31 H 0.04 0.84 6.53 -51.93 -0.34 0.50 16 32 H 0.08 1.25 7.77 -51.93 -0.40 0.84 16 33 H 0.09 1.78 7.81 -51.93 -0.41 1.37 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.15 2.18 7.01 -52.48 -0.37 1.81 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 40 H 0.08 1.50 7.79 -51.93 -0.40 1.10 16 41 H 0.09 1.73 6.11 -51.93 -0.32 1.41 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.09 1.85 6.08 -51.93 -0.32 1.54 16 LS Contribution 404.30 15.07 6.09 6.09 Total: -1.00 -28.57 404.30 -10.76 -39.33 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.16 Total: 5.31 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.53 Total: -3.01 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.33 Total: -35.07 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -1.02 Total: -25.35 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.45 Total: -2.27 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.57 -10.76 -39.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065515878.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.382 kcal (2) G-P(sol) polarization free energy of solvation -28.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds