Wall clock time and date at job start Tue Mar 31 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00188 * 2 1 4 4 H 1.48500 * 109.46907 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47364 * 300.00385 * 3 2 1 6 6 H 1.48504 * 109.46836 * 60.00499 * 3 2 1 7 7 C 1.37881 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99777 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99588 * 359.97438 * 7 2 1 10 10 N 1.46510 * 109.46809 * 180.02562 * 9 7 2 11 11 N 1.40064 * 125.86980 * 270.28635 * 10 9 7 12 12 C 1.30249 * 109.69101 * 180.12038 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.63725 * 12 11 10 14 14 C 1.36308 * 125.87260 * 90.00139 * 10 9 7 15 15 N 1.33199 * 134.61923 * 0.07553 * 14 10 9 16 16 C 1.31510 * 120.68256 * 179.97438 * 15 14 10 17 17 N 1.32123 * 122.64648 * 0.02562 * 16 15 14 18 18 C 1.32858 * 121.19451 * 0.02562 * 17 16 15 19 19 N 1.38107 * 120.81448 * 180.02562 * 18 17 16 20 20 C 1.46503 * 119.99962 * 359.97323 * 19 18 17 21 21 C 1.50700 * 109.46956 * 180.02562 * 20 19 18 22 22 C 1.38252 * 119.94646 * 269.72567 * 21 20 19 23 23 C 1.38196 * 120.11648 * 179.78092 * 22 21 20 24 24 C 1.38704 * 120.06211 * 0.56372 * 23 22 21 25 25 C 1.38975 * 119.82141 * 359.62219 * 24 23 22 26 26 C 1.38189 * 119.94285 * 90.00311 * 21 20 19 27 27 O 1.36103 * 120.78316 * 180.26738 * 25 24 23 28 28 C 1.43177 * 116.71368 * 342.81500 * 27 25 24 29 29 C 1.53470 * 108.25296 * 46.16465 * 28 27 25 30 30 O 1.36111 * 119.39339 * 179.53973 * 24 23 22 31 31 H 0.97001 * 119.99480 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.47701 * 60.00432 * 9 7 2 33 33 H 1.08996 * 109.47415 * 299.99946 * 9 7 2 34 34 H 1.08002 * 125.76682 * 179.90918 * 12 11 10 35 35 H 1.08001 * 118.67359 * 180.02562 * 16 15 14 36 36 H 0.97007 * 120.00145 * 179.97438 * 19 18 17 37 37 H 1.08999 * 109.47253 * 300.00618 * 20 19 18 38 38 H 1.09004 * 109.46630 * 60.00454 * 20 19 18 39 39 H 1.08001 * 119.94070 * 0.03442 * 22 21 20 40 40 H 1.08001 * 119.96567 * 180.29470 * 23 22 21 41 41 H 1.08003 * 119.96746 * 359.94987 * 26 21 20 42 42 H 1.09003 * 109.70313 * 165.85298 * 28 27 25 43 43 H 1.08999 * 109.70927 * 286.47513 * 28 27 25 44 44 H 1.09010 * 109.70695 * 59.94403 * 29 28 27 45 45 H 1.08998 * 109.71243 * 180.57079 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.7406 -4.2328 -1.1355 12 6 3.5501 -5.1865 -0.7726 13 6 3.5864 -5.2297 0.6379 14 6 2.7220 -4.2199 1.1040 15 7 2.5780 -4.0535 2.4177 16 6 3.2307 -4.8171 3.2664 17 7 4.0523 -5.7756 2.8765 18 6 4.2634 -6.0189 1.5876 19 7 5.1235 -7.0232 1.1888 20 6 5.8166 -7.8353 2.1920 21 6 6.6884 -8.8516 1.5005 22 6 6.1794 -10.0982 1.1870 23 6 6.9743 -11.0313 0.5488 24 6 8.2890 -10.7234 0.2316 25 6 8.8019 -9.4717 0.5502 26 6 7.9969 -8.5380 1.1860 27 8 10.0874 -9.1469 0.2432 28 6 10.9714 -10.2325 -0.0568 29 6 10.2544 -11.1828 -1.0253 30 8 9.0626 -11.6560 -0.3884 31 1 -0.4849 0.8401 0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6246 -2.5570 0.8896 34 1 4.1037 -5.8321 -1.4384 35 1 3.0895 -4.6542 4.3246 36 1 5.2686 -7.1909 0.2444 37 1 6.4355 -7.1910 2.8165 38 1 5.0831 -8.3483 2.8140 39 1 5.1574 -10.3418 1.4376 40 1 6.5727 -12.0027 0.3008 41 1 8.3933 -7.5648 1.4353 42 1 11.8793 -9.8491 -0.5226 43 1 11.2246 -10.7645 0.8602 44 1 9.9954 -10.6490 -1.9398 45 1 10.9040 -12.0253 -1.2622 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:34 Heat of formation + Delta-G solvation = 75.208700 kcal Electronic energy + Delta-G solvation = -31099.254627 eV Core-core repulsion = 26698.299473 eV Total energy + Delta-G solvation = -4400.955153 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69269 -41.33691 -38.88699 -38.22263 -37.69181 -36.08794 -33.75373 -32.70824 -31.58611 -31.27981 -31.15269 -29.86005 -28.78811 -27.25679 -26.12566 -24.65005 -23.90022 -23.32724 -22.96914 -22.12869 -20.91635 -20.07282 -19.07434 -18.06282 -17.69623 -17.53893 -17.26742 -16.64585 -16.33328 -15.86882 -15.60799 -15.31113 -15.19873 -14.85548 -14.73764 -14.56500 -14.38361 -14.26488 -14.03896 -13.69673 -13.65704 -13.34770 -13.25062 -12.79923 -12.27128 -12.15071 -12.09366 -11.62696 -11.57288 -11.50802 -11.16466 -10.97360 -10.93084 -10.91143 -10.74487 -10.26957 -10.05552 -9.78930 -9.22724 -9.06547 -8.68011 -8.58222 -8.45315 -8.18408 -7.60177 -6.19962 -4.26102 0.75565 0.89924 1.34512 1.97852 2.52814 2.74194 2.94911 3.04831 3.12394 3.24923 3.31892 3.38829 3.49190 3.70759 4.16661 4.27393 4.32682 4.33450 4.40784 4.43456 4.64513 4.65961 4.78232 4.80905 4.91620 4.94812 4.97496 5.02853 5.15551 5.21286 5.23656 5.47852 5.55107 5.65118 5.68699 5.74872 5.76167 6.12762 6.21917 6.34940 6.43136 6.71167 6.93908 6.95934 7.05872 7.13677 7.27848 7.53575 7.74809 7.92966 7.95576 8.26437 8.74720 8.86191 9.38820 10.88290 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.001777 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.484124 B =15755.442949 C =16299.703901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.263 3.737 10 N -0.332 5.332 11 N -0.244 5.244 12 C 0.069 3.931 13 C -0.337 4.337 14 C 0.363 3.637 15 N -0.555 5.555 16 C 0.367 3.633 17 N -0.619 5.619 18 C 0.510 3.490 19 N -0.704 5.704 20 C 0.178 3.822 21 C -0.104 4.104 22 C -0.093 4.093 23 C -0.116 4.116 24 C 0.055 3.945 25 C 0.047 3.953 26 C -0.091 4.091 27 O -0.306 6.306 28 C 0.020 3.980 29 C 0.020 3.980 30 O -0.308 6.308 31 H 0.267 0.733 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.182 0.818 35 H 0.195 0.805 36 H 0.410 0.590 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.926 -25.777 1.717 32.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.119 5.119 11 N -0.060 5.060 12 C -0.126 4.126 13 C -0.355 4.355 14 C 0.115 3.885 15 N -0.279 5.279 16 C 0.073 3.927 17 N -0.350 5.350 18 C 0.257 3.743 19 N -0.337 5.337 20 C 0.054 3.946 21 C -0.104 4.104 22 C -0.111 4.111 23 C -0.134 4.134 24 C 0.010 3.990 25 C 0.002 3.998 26 C -0.111 4.111 27 O -0.221 6.221 28 C -0.055 4.055 29 C -0.056 4.056 30 O -0.222 6.222 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.199 0.801 35 H 0.211 0.789 36 H 0.247 0.753 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.156 0.844 42 H 0.140 0.860 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 19.014 -24.730 1.679 31.240 hybrid contribution 1.249 0.294 -0.696 1.460 sum 20.263 -24.436 0.983 31.759 Atomic orbital electron populations 1.69931 1.05990 1.27487 1.49509 1.24905 0.94988 0.99369 0.94498 0.86289 0.79950 0.82563 0.77773 1.19709 1.20676 1.20587 1.21290 0.93585 0.89676 1.52491 0.92004 1.19796 0.85702 0.79885 0.99988 1.49453 1.35735 1.27863 0.98809 1.76940 1.11527 1.08125 1.09379 1.23366 0.99111 0.97786 0.92369 1.19605 1.12584 1.07987 0.95315 1.18935 0.91075 0.89936 0.88524 1.67517 1.29619 1.30821 0.99988 1.24407 0.85145 0.83976 0.99173 1.67938 1.26766 1.25775 1.14479 1.17890 0.84123 0.84042 0.88233 1.44357 1.46123 1.34149 1.09093 1.20088 0.94068 0.90654 0.89766 1.19680 0.93748 0.95527 1.01478 1.20917 0.99968 0.92320 0.97927 1.20452 0.90058 1.01175 1.01746 1.18968 0.92066 0.89071 0.98863 1.18855 0.85243 0.94286 1.01401 1.20396 0.92944 0.99433 0.98280 1.86340 1.17550 1.33359 1.84835 1.23642 0.93069 0.88898 0.99913 1.23656 0.86122 1.00433 0.95366 1.86319 1.34952 1.32956 1.68006 0.92341 0.92816 0.92232 0.80139 0.78860 0.75333 0.90388 0.90191 0.84579 0.84569 0.84418 0.85957 0.90418 0.90301 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -15.32 9.39 -34.44 -0.32 -15.64 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.26 7.08 6.19 -5.19 -0.03 7.05 16 10 N -0.33 -8.03 3.63 -61.64 -0.22 -8.25 16 11 N -0.24 -5.28 12.45 30.80 0.38 -4.90 16 12 C 0.07 1.18 11.87 -17.11 -0.20 0.98 16 13 C -0.34 -6.15 6.14 -106.82 -0.66 -6.81 16 14 C 0.36 8.07 8.04 -156.24 -1.26 6.81 16 15 N -0.55 -11.73 10.47 -13.97 -0.15 -11.87 16 16 C 0.37 6.14 12.24 -92.11 -1.13 5.01 16 17 N -0.62 -9.71 9.69 -13.62 -0.13 -9.84 16 18 C 0.51 7.80 7.55 -154.85 -1.17 6.63 16 19 N -0.70 -7.75 5.67 -61.26 -0.35 -8.10 16 20 C 0.18 1.62 5.85 -5.19 -0.03 1.59 16 21 C -0.10 -0.85 5.25 -104.63 -0.55 -1.40 16 22 C -0.09 -0.69 9.69 -39.59 -0.38 -1.08 16 23 C -0.12 -0.92 9.96 -39.42 -0.39 -1.31 16 24 C 0.06 0.50 6.49 -39.14 -0.25 0.25 16 25 C 0.05 0.44 6.49 -39.14 -0.25 0.19 16 26 C -0.09 -0.82 9.61 -39.43 -0.38 -1.19 16 27 O -0.31 -2.74 10.42 -32.85 -0.34 -3.08 16 28 C 0.02 0.10 7.26 37.40 0.27 0.37 16 29 C 0.02 0.10 7.26 37.40 0.27 0.37 16 30 O -0.31 -2.56 10.42 -32.87 -0.34 -2.90 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.05 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.19 2.44 8.06 -52.49 -0.42 2.01 16 36 H 0.41 3.87 8.33 -40.82 -0.34 3.53 16 37 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 38 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 42 H 0.12 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 45 H 0.12 0.24 8.14 -51.93 -0.42 -0.19 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -35.20 391.42 -11.48 -46.68 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.38 Total: 1.12 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -6.57 Total: 3.58 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: 0.27 Total: -68.16 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.68 Total: -5.98 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.20 -11.48 -46.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.884 kcal (2) G-P(sol) polarization free energy of solvation -35.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds