Wall clock time and date at job start Tue Mar 31 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99699 * 2 1 4 4 H 1.48504 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47131 * 299.99986 * 3 2 1 6 6 H 1.48504 * 109.47136 * 59.99420 * 3 2 1 7 7 C 1.37876 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99856 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99947 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47108 * 179.97438 * 9 7 2 11 11 N 1.40061 * 125.87168 * 269.69033 * 10 9 7 12 12 C 1.30259 * 109.69541 * 180.26334 * 11 10 9 13 13 C 1.41164 * 108.46907 * 359.97438 * 12 11 10 14 14 C 1.36313 * 125.87489 * 89.99592 * 10 9 7 15 15 N 1.33198 * 134.62303 * 359.76203 * 14 10 9 16 16 C 1.31508 * 120.69268 * 180.02562 * 15 14 10 17 17 N 1.32113 * 122.65066 * 359.96126 * 16 15 14 18 18 C 1.32894 * 121.18678 * 0.02562 * 17 16 15 19 19 N 1.38174 * 120.80922 * 179.97438 * 18 17 16 20 20 C 1.39994 * 120.00385 * 354.47486 * 19 18 17 21 21 C 1.38875 * 119.97254 * 147.27525 * 20 19 18 22 22 C 1.38281 * 120.14003 * 180.02562 * 21 20 19 23 23 C 1.38468 * 119.81434 * 0.02562 * 22 21 20 24 24 C 1.38761 * 120.17753 * 359.96848 * 23 22 21 25 25 C 1.38406 * 120.15110 * 359.74569 * 24 23 22 26 26 O 1.36482 * 119.59758 * 179.97438 * 24 23 22 27 27 C 1.42893 * 115.93636 * 68.30482 * 26 24 23 28 28 C 1.52063 * 110.76821 * 275.54536 * 27 26 24 29 29 C 1.52062 * 112.36925 * 64.81548 * 28 27 26 30 30 O 1.36563 * 120.23444 * 179.97438 * 23 22 21 31 31 H 0.97000 * 120.00612 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47657 * 59.99397 * 9 7 2 33 33 H 1.09005 * 109.46945 * 299.99331 * 9 7 2 34 34 H 1.07993 * 125.76495 * 179.97438 * 12 11 10 35 35 H 1.07997 * 118.67800 * 179.97438 * 16 15 14 36 36 H 0.97004 * 119.99488 * 174.47942 * 19 18 17 37 37 H 1.07996 * 119.92525 * 0.04055 * 21 20 19 38 38 H 1.08000 * 120.09049 * 180.02562 * 22 21 20 39 39 H 1.08007 * 120.17267 * 180.28558 * 25 24 23 40 40 H 1.09006 * 109.21792 * 35.87556 * 27 26 24 41 41 H 1.08995 * 109.21952 * 155.21137 * 27 26 24 42 42 H 1.09001 * 108.89955 * 185.55534 * 28 27 26 43 43 H 1.08992 * 108.90624 * 304.15907 * 28 27 26 44 44 H 1.08994 * 109.22047 * 55.52573 * 29 28 27 45 45 H 1.09006 * 109.21769 * 174.86139 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8901 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 7 2.7319 -4.2404 -1.1344 12 6 3.5421 -5.1936 -0.7715 13 6 3.5820 -5.2338 0.6390 14 6 2.7224 -4.2197 1.1051 15 7 2.5826 -4.0499 2.4188 16 6 3.2348 -4.8139 3.2675 17 7 4.0510 -5.7769 2.8779 18 6 4.2569 -6.0248 1.5886 19 7 5.1127 -7.0336 1.1897 20 6 5.8633 -7.7325 2.1427 21 6 6.1643 -9.0732 1.9416 22 6 6.9049 -9.7670 2.8808 23 6 7.3457 -9.1214 4.0237 24 6 7.0466 -7.7818 4.2274 25 6 6.3105 -7.0830 3.2864 26 8 7.4866 -7.1573 5.3584 27 6 8.8991 -6.9650 5.4569 28 6 9.5747 -8.2074 6.0156 29 6 9.4440 -9.4044 5.0869 30 8 8.0773 -9.7984 4.9572 31 1 -0.4851 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6242 -2.5567 0.8904 34 1 4.0906 -5.8434 -1.4372 35 1 3.0976 -4.6476 4.3257 36 1 5.1935 -7.2575 0.2494 37 1 5.8194 -9.5749 1.0496 38 1 7.1389 -10.8096 2.7234 39 1 6.0815 -6.0391 3.4424 40 1 9.3021 -6.7519 4.4667 41 1 9.1011 -6.1200 6.1151 42 1 10.6325 -7.9946 6.1706 43 1 9.1206 -8.4552 6.9749 44 1 9.8359 -9.1408 4.1046 45 1 10.0206 -10.2366 5.4909 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065519901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:36 Heat of formation + Delta-G solvation = 63.465133 kcal Electronic energy + Delta-G solvation = -31956.003693 eV Core-core repulsion = 27554.539301 eV Total energy + Delta-G solvation = -4401.464393 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.98234 -41.81807 -40.26136 -39.10317 -38.40028 -36.81360 -35.72595 -34.08053 -33.42176 -33.00263 -31.58929 -31.07954 -29.37961 -28.84404 -27.36515 -25.61224 -25.50252 -24.21308 -23.78207 -22.70062 -22.52255 -21.56810 -19.77099 -19.48670 -18.90042 -18.83959 -18.18418 -18.02137 -17.54519 -16.85398 -16.71819 -16.43892 -16.29488 -16.15125 -15.68134 -15.33753 -15.26505 -15.05423 -15.03078 -14.83452 -14.68660 -14.43755 -14.03512 -13.81258 -13.68418 -13.56352 -13.05680 -12.86716 -12.77536 -12.63647 -12.42236 -12.35262 -12.20158 -11.86545 -11.74729 -11.59183 -11.32994 -11.13574 -10.80468 -10.77158 -10.17783 -10.07495 -9.73432 -9.59115 -8.67265 -8.37005 -6.53846 -0.34121 0.14407 0.26151 0.53045 1.29301 1.34213 1.35613 1.48777 1.57546 1.77140 2.30423 2.37113 2.55247 2.85640 2.92847 3.01246 3.15623 3.30567 3.52545 3.64992 3.76400 3.80617 3.97461 4.00473 4.19753 4.24719 4.30468 4.32696 4.40106 4.42277 4.46064 4.71905 4.78544 4.83203 4.83673 4.85784 5.00655 5.10748 5.14846 5.24979 5.38979 5.45476 5.46170 5.50377 5.68354 5.76061 5.93436 6.01018 6.21386 6.48473 6.52087 6.63593 6.70365 7.15611 7.33025 8.70863 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.016394 B = 0.002106 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.555547 B =13295.089706 C =14294.275375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.976 3.024 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.046 0.954 9 C 0.284 3.716 10 N -0.364 5.364 11 N -0.283 5.283 12 C 0.102 3.898 13 C -0.331 4.331 14 C 0.336 3.664 15 N -0.593 5.593 16 C 0.373 3.627 17 N -0.603 5.603 18 C 0.509 3.491 19 N -0.621 5.621 20 C 0.161 3.839 21 C -0.126 4.126 22 C -0.092 4.092 23 C 0.034 3.966 24 C 0.071 3.929 25 C -0.127 4.127 26 O -0.344 6.344 27 C 0.050 3.950 28 C -0.183 4.183 29 C 0.052 3.948 30 O -0.338 6.338 31 H 0.274 0.726 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.247 0.753 35 H 0.228 0.772 36 H 0.440 0.560 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.130 0.870 40 H 0.061 0.939 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.224 -22.964 6.563 32.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.064 0.936 9 C 0.165 3.835 10 N -0.150 5.150 11 N -0.098 5.098 12 C -0.093 4.093 13 C -0.348 4.348 14 C 0.089 3.911 15 N -0.318 5.318 16 C 0.081 3.919 17 N -0.332 5.332 18 C 0.257 3.743 19 N -0.248 5.248 20 C 0.065 3.935 21 C -0.146 4.146 22 C -0.111 4.111 23 C -0.011 4.011 24 C 0.026 3.974 25 C -0.148 4.148 26 O -0.261 6.261 27 C -0.024 4.024 28 C -0.220 4.220 29 C -0.022 4.022 30 O -0.255 6.255 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.263 0.737 35 H 0.244 0.756 36 H 0.282 0.718 37 H 0.187 0.813 38 H 0.181 0.819 39 H 0.148 0.852 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 21.061 -21.927 6.756 31.145 hybrid contribution 0.359 0.963 -0.391 1.099 sum 21.420 -20.964 6.365 30.640 Atomic orbital electron populations 1.70014 1.07363 1.28856 1.49493 1.25798 0.95913 1.02879 0.93603 0.85251 0.78253 0.78041 0.78544 1.19849 1.19207 1.19514 1.21396 0.92872 0.91109 1.53495 0.93574 1.19156 0.85926 0.80830 0.97605 1.49121 1.37230 1.28376 1.00316 1.76920 1.13821 1.10037 1.08982 1.24388 0.96466 0.96117 0.92290 1.19652 1.12325 1.06601 0.96267 1.19361 0.92086 0.90934 0.88763 1.67539 1.30953 1.32946 1.00402 1.25170 0.83585 0.82971 1.00179 1.68302 1.25781 1.24562 1.14538 1.17939 0.84032 0.84512 0.87821 1.41708 1.39888 1.33019 1.10173 1.17588 0.94043 0.91324 0.90505 1.21060 1.01077 0.90477 1.02031 1.21088 0.98255 1.01597 0.90182 1.19321 0.99775 0.90317 0.91655 1.19045 0.99569 0.90772 0.87990 1.21023 0.99586 1.00996 0.93189 1.86345 1.24886 1.77849 1.37002 1.22890 0.78284 0.99038 1.02224 1.22459 1.03577 0.95090 1.00887 1.22886 0.80372 0.98938 1.00053 1.86336 1.23619 1.59467 1.56109 0.91688 0.94850 0.94924 0.73717 0.75586 0.71831 0.81299 0.81937 0.85243 0.92101 0.86725 0.86288 0.90956 0.91702 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.39 13.29 21.45 0.28 -54.10 16 2 C 0.02 1.08 5.46 84.65 0.46 1.54 16 3 Si 0.98 44.90 29.54 68.60 2.03 46.93 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.55 -32.55 9.39 25.60 0.24 -32.31 16 8 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 9 C 0.28 15.95 6.19 85.63 0.53 16.48 16 10 N -0.36 -17.84 3.63 -348.93 -1.27 -19.11 16 11 N -0.28 -11.83 12.45 -56.46 -0.70 -12.53 16 12 C 0.10 3.08 11.88 85.64 1.02 4.09 16 13 C -0.33 -11.20 6.14 -21.29 -0.13 -11.33 16 14 C 0.34 14.89 8.04 134.15 1.08 15.97 16 15 N -0.59 -25.42 10.47 -198.11 -2.07 -27.50 16 16 C 0.37 12.52 12.24 180.87 2.21 14.74 16 17 N -0.60 -18.69 7.25 -196.95 -1.43 -20.11 16 18 C 0.51 14.46 7.27 133.61 0.97 15.43 16 19 N -0.62 -11.72 5.47 -184.36 -1.01 -12.73 16 20 C 0.16 3.11 6.31 38.16 0.24 3.35 16 21 C -0.13 -1.70 9.95 22.43 0.22 -1.48 16 22 C -0.09 -1.36 10.00 22.33 0.22 -1.14 16 23 C 0.03 0.69 5.73 22.45 0.13 0.82 16 24 C 0.07 1.68 5.73 22.43 0.13 1.81 16 25 C -0.13 -3.07 8.55 22.48 0.19 -2.88 16 26 O -0.34 -8.43 10.16 -84.32 -0.86 -9.29 16 27 C 0.05 0.77 6.51 71.67 0.47 1.24 16 28 C -0.18 -2.03 5.92 29.98 0.18 -1.85 16 29 C 0.05 0.61 6.51 71.67 0.47 1.07 16 30 O -0.34 -6.62 10.16 -85.28 -0.87 -7.49 16 31 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.03 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.03 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.25 3.84 8.06 -2.91 -0.02 3.81 16 35 H 0.23 5.81 8.06 -2.91 -0.02 5.78 16 36 H 0.44 4.87 8.69 -92.70 -0.81 4.06 16 37 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.13 3.70 6.27 -2.91 -0.02 3.68 16 40 H 0.06 0.86 7.93 -2.38 -0.02 0.84 16 41 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 0.64 7.93 -2.39 -0.02 0.62 16 45 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -81.39 383.59 3.00 -78.40 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.26 Total: 11.96 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 8.63 Total: 25.56 kcal Atomic # 7 Polarization: -139.88 SS G_CDS: -6.19 Total: -146.08 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -1.72 Total: -16.78 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -81.39 3.00 -78.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.863 kcal (2) G-P(sol) polarization free energy of solvation -81.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds