Wall clock time and date at job start Tue Mar 31 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99664 * 2 1 4 4 H 1.48501 * 109.46866 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47336 * 299.99406 * 3 2 1 6 6 H 1.48498 * 109.47213 * 59.99813 * 3 2 1 7 7 C 1.37877 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00289 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47344 * 180.02562 * 9 7 2 11 11 N 1.40066 * 125.87598 * 90.02237 * 10 9 7 12 12 C 1.30248 * 109.69710 * 180.02562 * 11 10 9 13 13 C 1.41172 * 108.46803 * 359.97438 * 12 11 10 14 14 C 1.36318 * 125.87034 * 270.02580 * 10 9 7 15 15 N 1.33197 * 134.62159 * 359.97438 * 14 10 9 16 16 C 1.31505 * 120.68370 * 180.02562 * 15 14 10 17 17 N 1.32123 * 122.65058 * 359.78074 * 16 15 14 18 18 C 1.32867 * 121.18745 * 0.47286 * 17 16 15 19 19 N 1.38108 * 120.81020 * 179.80427 * 18 17 16 20 20 C 1.46499 * 119.99952 * 359.43883 * 19 18 17 21 21 H 1.09005 * 108.61380 * 327.24438 * 20 19 18 22 22 C 1.51875 * 108.65987 * 209.33577 * 20 19 18 23 23 C 1.53533 * 108.97525 * 178.62114 * 22 20 19 24 24 S 1.81620 * 107.28248 * 72.68278 * 23 22 20 25 25 C 1.76466 * 102.60635 * 313.56626 * 24 23 22 26 26 C 1.39624 * 117.71606 * 192.76059 * 25 24 23 27 27 C 1.37739 * 120.63354 * 180.72119 * 26 25 24 28 28 C 1.38343 * 119.50278 * 359.97385 * 27 26 25 29 29 C 1.37771 * 120.01275 * 359.74051 * 28 27 26 30 30 C 1.38172 * 122.30374 * 12.97565 * 25 24 23 31 31 H 0.97001 * 120.00134 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47054 * 59.99949 * 9 7 2 33 33 H 1.09009 * 109.46542 * 300.00369 * 9 7 2 34 34 H 1.08001 * 125.76662 * 179.97438 * 12 11 10 35 35 H 1.08006 * 118.67188 * 179.97438 * 16 15 14 36 36 H 0.97001 * 120.00197 * 179.72291 * 19 18 17 37 37 H 1.08996 * 109.54796 * 298.47134 * 22 20 19 38 38 H 1.09006 * 109.55153 * 58.77379 * 22 20 19 39 39 H 1.09002 * 109.88488 * 313.23797 * 23 22 20 40 40 H 1.08998 * 109.89408 * 192.13181 * 23 22 20 41 41 H 1.08006 * 119.68643 * 0.69840 * 26 25 24 42 42 H 1.07999 * 120.25172 * 179.97438 * 27 26 25 43 43 H 1.08002 * 119.99634 * 179.73621 * 28 27 26 44 44 H 1.07993 * 119.46455 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 7 2.7362 -4.2368 1.1344 12 6 3.5496 -5.1871 0.7715 13 6 3.5865 -5.2297 -0.6391 14 6 2.7225 -4.2194 -1.1052 15 7 2.5797 -4.0520 -2.4188 16 6 3.2325 -4.8156 -3.2675 17 7 4.0560 -5.7724 -2.8777 18 6 4.2615 -6.0205 -1.5887 19 7 5.1210 -7.0253 -1.1900 20 6 5.8098 -7.8410 -2.1933 21 1 5.1596 -7.9468 -3.0617 22 6 6.0628 -9.2196 -1.6083 23 6 6.7537 -10.0917 -2.6663 24 16 8.4636 -9.4991 -2.8211 25 6 8.2573 -7.7493 -2.9196 26 6 9.3573 -6.9872 -3.3179 27 6 9.2675 -5.6152 -3.4010 28 6 8.0740 -4.9903 -3.0864 29 6 6.9850 -5.7397 -2.6987 30 6 7.0612 -7.1284 -2.6145 31 1 -0.4850 0.8400 -0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6247 -2.5570 0.8898 34 1 4.1024 -5.8333 1.4372 35 1 3.0921 -4.6518 -4.3258 36 1 5.2655 -7.1937 -0.2457 37 1 6.7048 -9.1317 -0.7319 38 1 5.1141 -9.6746 -1.3233 39 1 6.2389 -9.9929 -3.6220 40 1 6.7498 -11.1341 -2.3478 41 1 10.2876 -7.4780 -3.5629 42 1 10.1224 -5.0317 -3.7094 43 1 7.9960 -3.9146 -3.1447 44 1 6.0575 -5.2428 -2.4556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065520136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:56 Heat of formation + Delta-G solvation = 154.716886 kcal Electronic energy + Delta-G solvation = -29901.830266 eV Core-core repulsion = 25947.075717 eV Total energy + Delta-G solvation = -3954.754549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.116 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.56827 -39.98187 -38.42621 -37.10957 -34.62058 -33.63267 -31.97530 -31.38664 -30.97677 -30.93886 -29.52440 -27.35792 -26.23960 -24.11303 -23.41499 -23.36651 -22.82934 -22.36340 -20.87124 -20.18684 -18.11128 -17.91447 -17.56981 -16.71703 -16.48643 -16.19799 -15.97045 -15.75311 -15.20753 -14.90889 -14.60817 -14.33366 -14.18213 -13.86033 -13.83659 -13.48057 -13.42677 -13.33571 -12.98859 -12.86316 -12.60981 -12.20844 -11.81782 -11.68983 -11.53724 -11.49615 -11.09903 -11.03574 -10.86826 -10.81141 -10.36393 -10.31563 -10.16638 -9.87560 -9.86792 -9.37969 -8.93211 -8.75501 -8.62873 -8.32081 -7.73275 -7.65946 -6.24841 -4.31399 0.98407 1.19536 1.21783 1.28317 1.83283 2.05107 2.80135 2.94127 3.02957 3.21497 3.28723 3.35015 3.57366 4.13917 4.20964 4.28593 4.31848 4.43418 4.48273 4.67482 4.73152 4.79390 4.82381 4.91887 5.08279 5.09632 5.11147 5.15623 5.21102 5.32402 5.42027 5.46875 5.56965 5.63672 5.68601 5.84464 6.08546 6.21491 6.29664 6.44524 6.60012 6.74452 6.82836 6.99015 7.04818 7.11922 7.42077 7.67498 7.83322 7.87701 8.15969 8.66960 8.75424 9.33904 10.83459 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.002481 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.586109 B =11284.308131 C =12244.376397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.263 3.737 10 N -0.331 5.331 11 N -0.241 5.241 12 C 0.069 3.931 13 C -0.336 4.336 14 C 0.364 3.636 15 N -0.551 5.551 16 C 0.366 3.634 17 N -0.616 5.616 18 C 0.508 3.492 19 N -0.701 5.701 20 C 0.194 3.806 21 H 0.108 0.892 22 C -0.132 4.132 23 C -0.099 4.099 24 S -0.130 6.130 25 C -0.071 4.071 26 C -0.108 4.108 27 C -0.102 4.102 28 C -0.124 4.124 29 C -0.081 4.081 30 C -0.096 4.096 31 H 0.267 0.733 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.183 0.817 35 H 0.196 0.804 36 H 0.411 0.589 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.674 -20.619 -6.016 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.117 5.117 11 N -0.057 5.057 12 C -0.126 4.126 13 C -0.354 4.354 14 C 0.116 3.884 15 N -0.275 5.275 16 C 0.072 3.928 17 N -0.347 5.347 18 C 0.257 3.743 19 N -0.333 5.333 20 C 0.088 3.912 21 H 0.125 0.875 22 C -0.171 4.171 23 C -0.248 4.248 24 S 0.112 5.888 25 C -0.184 4.184 26 C -0.131 4.131 27 C -0.122 4.122 28 C -0.144 4.144 29 C -0.101 4.101 30 C -0.103 4.103 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.200 0.800 35 H 0.212 0.788 36 H 0.248 0.752 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.628 -20.333 -6.000 26.337 hybrid contribution -0.163 1.314 0.515 1.421 sum 15.465 -19.019 -5.485 25.119 Atomic orbital electron populations 1.69925 1.06009 1.27569 1.49353 1.24898 0.94982 0.99383 0.94415 0.86289 0.79940 0.82529 0.77831 1.19692 1.20558 1.20623 1.21271 0.93568 0.89628 1.52719 0.92001 1.19816 0.85680 0.79854 1.00034 1.49492 1.35724 1.27688 0.98773 1.76960 1.11356 1.07994 1.09345 1.23383 0.99051 0.97914 0.92294 1.19599 1.12618 1.07834 0.95358 1.18945 0.91068 0.89862 0.88521 1.67528 1.29300 1.30689 0.99981 1.24436 0.85026 0.84104 0.99244 1.68018 1.26601 1.25825 1.14283 1.17861 0.83912 0.84182 0.88355 1.44371 1.45859 1.34280 1.08823 1.19417 0.90969 0.87994 0.92782 0.87458 1.21885 1.02799 0.93825 0.98592 1.23691 0.95111 1.02984 1.02967 1.85516 1.11727 0.99101 1.92505 1.21261 0.96194 0.96102 1.04798 1.20809 0.97347 0.93819 1.01154 1.21049 0.97922 0.93975 0.99245 1.21170 0.93192 1.00243 0.99833 1.21584 0.99224 0.92956 0.96332 1.19923 0.93635 0.94795 1.01980 0.92284 0.92215 0.92774 0.80048 0.78802 0.75162 0.89653 0.88880 0.88544 0.86535 0.85761 0.85608 0.85927 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.26 6.91 6.19 -5.20 -0.03 6.88 16 10 N -0.33 -7.72 3.63 -61.65 -0.22 -7.94 16 11 N -0.24 -5.02 12.45 30.80 0.38 -4.63 16 12 C 0.07 1.12 11.87 -17.11 -0.20 0.91 16 13 C -0.34 -5.77 6.14 -106.82 -0.66 -6.43 16 14 C 0.36 7.73 8.04 -156.23 -1.26 6.47 16 15 N -0.55 -11.13 10.47 -13.97 -0.15 -11.27 16 16 C 0.37 5.80 12.24 -92.12 -1.13 4.67 16 17 N -0.62 -9.01 7.71 -13.62 -0.11 -9.12 16 18 C 0.51 7.22 5.69 -154.85 -0.88 6.33 16 19 N -0.70 -7.22 4.75 -55.60 -0.26 -7.49 16 20 C 0.19 1.80 2.37 -69.97 -0.17 1.64 16 21 H 0.11 1.12 7.45 -51.93 -0.39 0.74 16 22 C -0.13 -0.84 5.26 -27.03 -0.14 -0.99 16 23 C -0.10 -0.60 6.53 37.43 0.24 -0.35 16 24 S -0.13 -1.12 21.99 -107.50 -2.36 -3.48 16 25 C -0.07 -0.74 6.05 -39.09 -0.24 -0.98 16 26 C -0.11 -1.10 9.65 -39.25 -0.38 -1.48 16 27 C -0.10 -1.03 10.06 -39.72 -0.40 -1.43 16 28 C -0.12 -1.45 10.03 -39.71 -0.40 -1.85 16 29 C -0.08 -1.03 8.81 -39.34 -0.35 -1.37 16 30 C -0.10 -1.06 5.64 -104.56 -0.59 -1.65 16 31 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.05 1.47 8.14 -51.92 -0.42 1.05 16 34 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.20 2.34 8.06 -52.48 -0.42 1.92 16 36 H 0.41 3.40 8.47 -40.82 -0.35 3.06 16 37 H 0.08 0.55 8.03 -51.93 -0.42 0.13 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.12 1.06 8.05 -52.48 -0.42 0.64 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 44 H 0.13 1.93 4.17 -52.49 -0.22 1.71 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -32.66 379.72 -13.41 -46.07 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.14 Total: 3.67 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -6.99 Total: -3.24 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: 0.38 Total: -65.28 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -2.36 Total: -3.48 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.66 -13.41 -46.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.789 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds