Wall clock time and date at job start Tue Mar 31 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99664 * 2 1 4 4 H 1.48501 * 109.46866 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47336 * 299.99406 * 3 2 1 6 6 H 1.48498 * 109.47213 * 59.99813 * 3 2 1 7 7 C 1.37877 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00289 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47344 * 180.02562 * 9 7 2 11 11 N 1.40066 * 125.87598 * 90.02237 * 10 9 7 12 12 C 1.30248 * 109.69710 * 180.02562 * 11 10 9 13 13 C 1.41172 * 108.46803 * 359.97438 * 12 11 10 14 14 C 1.36318 * 125.87034 * 270.02580 * 10 9 7 15 15 N 1.33197 * 134.62159 * 359.97438 * 14 10 9 16 16 C 1.31505 * 120.68370 * 180.02562 * 15 14 10 17 17 N 1.32123 * 122.65058 * 359.78074 * 16 15 14 18 18 C 1.32867 * 121.18745 * 0.47286 * 17 16 15 19 19 N 1.38108 * 120.81020 * 179.80427 * 18 17 16 20 20 C 1.46499 * 119.99952 * 359.43883 * 19 18 17 21 21 H 1.09005 * 108.61380 * 327.24438 * 20 19 18 22 22 C 1.51875 * 108.65987 * 209.33577 * 20 19 18 23 23 C 1.53533 * 108.97525 * 178.62114 * 22 20 19 24 24 S 1.81620 * 107.28248 * 72.68278 * 23 22 20 25 25 C 1.76466 * 102.60635 * 313.56626 * 24 23 22 26 26 C 1.39624 * 117.71606 * 192.76059 * 25 24 23 27 27 C 1.37739 * 120.63354 * 180.72119 * 26 25 24 28 28 C 1.38343 * 119.50278 * 359.97385 * 27 26 25 29 29 C 1.37771 * 120.01275 * 359.74051 * 28 27 26 30 30 C 1.38172 * 122.30374 * 12.97565 * 25 24 23 31 31 H 0.97001 * 120.00134 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47054 * 59.99949 * 9 7 2 33 33 H 1.09009 * 109.46542 * 300.00369 * 9 7 2 34 34 H 1.08001 * 125.76662 * 179.97438 * 12 11 10 35 35 H 1.08006 * 118.67188 * 179.97438 * 16 15 14 36 36 H 0.97001 * 120.00197 * 179.72291 * 19 18 17 37 37 H 1.08996 * 109.54796 * 298.47134 * 22 20 19 38 38 H 1.09006 * 109.55153 * 58.77379 * 22 20 19 39 39 H 1.09002 * 109.88488 * 313.23797 * 23 22 20 40 40 H 1.08998 * 109.89408 * 192.13181 * 23 22 20 41 41 H 1.08006 * 119.68643 * 0.69840 * 26 25 24 42 42 H 1.07999 * 120.25172 * 179.97438 * 27 26 25 43 43 H 1.08002 * 119.99634 * 179.73621 * 28 27 26 44 44 H 1.07993 * 119.46455 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 7 2.7362 -4.2368 1.1344 12 6 3.5496 -5.1871 0.7715 13 6 3.5865 -5.2297 -0.6391 14 6 2.7225 -4.2194 -1.1052 15 7 2.5797 -4.0520 -2.4188 16 6 3.2325 -4.8156 -3.2675 17 7 4.0560 -5.7724 -2.8777 18 6 4.2615 -6.0205 -1.5887 19 7 5.1210 -7.0253 -1.1900 20 6 5.8098 -7.8410 -2.1933 21 1 5.1596 -7.9468 -3.0617 22 6 6.0628 -9.2196 -1.6083 23 6 6.7537 -10.0917 -2.6663 24 16 8.4636 -9.4991 -2.8211 25 6 8.2573 -7.7493 -2.9196 26 6 9.3573 -6.9872 -3.3179 27 6 9.2675 -5.6152 -3.4010 28 6 8.0740 -4.9903 -3.0864 29 6 6.9850 -5.7397 -2.6987 30 6 7.0612 -7.1284 -2.6145 31 1 -0.4850 0.8400 -0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6247 -2.5570 0.8898 34 1 4.1024 -5.8333 1.4372 35 1 3.0921 -4.6518 -4.3258 36 1 5.2655 -7.1937 -0.2457 37 1 6.7048 -9.1317 -0.7319 38 1 5.1141 -9.6746 -1.3233 39 1 6.2389 -9.9929 -3.6220 40 1 6.7498 -11.1341 -2.3478 41 1 10.2876 -7.4780 -3.5629 42 1 10.1224 -5.0317 -3.7094 43 1 7.9960 -3.9146 -3.1447 44 1 6.0575 -5.2428 -2.4556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065520136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:55 Heat of formation + Delta-G solvation = 137.174896 kcal Electronic energy + Delta-G solvation = -29902.590944 eV Core-core repulsion = 25947.075717 eV Total energy + Delta-G solvation = -3955.515226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.116 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.92537 -40.91054 -39.67401 -38.03161 -35.92132 -35.29904 -33.46449 -32.83942 -31.87506 -31.68911 -30.74379 -29.20459 -27.16457 -25.57633 -25.07163 -24.08881 -23.80233 -23.55875 -21.67439 -21.60384 -19.38479 -18.87303 -18.84533 -18.66160 -17.75795 -17.10723 -16.96786 -16.65560 -16.50238 -16.38618 -15.75018 -15.48485 -15.27611 -15.12927 -14.98238 -14.62830 -14.47317 -14.12483 -14.03711 -13.81039 -13.72407 -13.63811 -13.26511 -13.05239 -12.77450 -12.72895 -12.45836 -12.37064 -12.32218 -12.26994 -11.87488 -11.63900 -11.53685 -11.02417 -10.77426 -10.69548 -10.63223 -10.10675 -9.81510 -9.75976 -9.07643 -8.37207 -8.34252 -6.54025 -0.08706 0.18762 0.35858 0.47852 0.64004 1.31223 1.33702 1.37288 1.43046 1.48972 1.60721 1.90174 2.30221 2.73251 2.92548 2.95381 3.20838 3.36280 3.48211 3.60275 3.65105 3.69486 3.90049 4.01295 4.06875 4.15247 4.25821 4.35887 4.43025 4.45240 4.55627 4.70237 4.78298 4.81524 4.84895 4.87943 4.98428 5.01539 5.15773 5.27097 5.43895 5.46022 5.51322 5.59712 5.70391 5.76370 5.89327 5.94408 6.06007 6.50455 6.54136 6.74169 7.15599 7.40601 8.70680 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.002481 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.586109 B =11284.308131 C =12244.376397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.975 3.025 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.551 4.551 8 H 0.045 0.955 9 C 0.285 3.715 10 N -0.366 5.366 11 N -0.288 5.288 12 C 0.100 3.900 13 C -0.343 4.343 14 C 0.339 3.661 15 N -0.601 5.601 16 C 0.375 3.625 17 N -0.609 5.609 18 C 0.522 3.478 19 N -0.677 5.677 20 C 0.195 3.805 21 H 0.099 0.901 22 C -0.124 4.124 23 C -0.093 4.093 24 S -0.135 6.135 25 C -0.078 4.078 26 C -0.114 4.114 27 C -0.101 4.101 28 C -0.141 4.141 29 C -0.101 4.101 30 C -0.102 4.102 31 H 0.274 0.726 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.239 0.761 35 H 0.227 0.773 36 H 0.425 0.575 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.148 0.852 43 H 0.120 0.880 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.300 -23.157 -6.282 30.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.589 4.589 8 H 0.063 0.937 9 C 0.166 3.834 10 N -0.152 5.152 11 N -0.103 5.103 12 C -0.095 4.095 13 C -0.361 4.361 14 C 0.092 3.908 15 N -0.328 5.328 16 C 0.083 3.917 17 N -0.340 5.340 18 C 0.269 3.731 19 N -0.309 5.309 20 C 0.090 3.910 21 H 0.117 0.883 22 C -0.163 4.163 23 C -0.242 4.242 24 S 0.107 5.893 25 C -0.190 4.190 26 C -0.137 4.137 27 C -0.121 4.121 28 C -0.161 4.161 29 C -0.122 4.122 30 C -0.109 4.109 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.255 0.745 35 H 0.243 0.757 36 H 0.264 0.736 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.162 0.838 41 H 0.159 0.841 42 H 0.166 0.834 43 H 0.138 0.862 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 18.301 -22.946 -6.255 30.009 hybrid contribution -0.811 1.854 0.470 2.077 sum 17.490 -21.092 -5.785 28.004 Atomic orbital electron populations 1.70016 1.07353 1.28843 1.49519 1.25786 0.95899 1.02828 0.93578 0.85263 0.78239 0.78082 0.78587 1.19918 1.19396 1.19222 1.21401 0.92833 0.91185 1.53490 0.93689 1.19118 0.85940 0.80881 0.97469 1.49102 1.37191 1.28486 1.00437 1.76905 1.14014 1.10317 1.09100 1.24278 0.96468 0.96049 0.92674 1.19709 1.12635 1.07612 0.96123 1.19344 0.91892 0.90829 0.88755 1.67532 1.31845 1.33159 1.00274 1.25127 0.83522 0.83009 1.00080 1.68171 1.26151 1.25385 1.14304 1.17895 0.83478 0.84091 0.87606 1.44437 1.43871 1.32519 1.10085 1.19574 0.89877 0.89129 0.92390 0.88276 1.21871 1.04107 0.91707 0.98630 1.23834 0.92995 1.04132 1.03191 1.85567 1.14148 0.97349 1.92210 1.21491 0.95915 0.97616 1.04023 1.21125 0.98026 0.93949 1.00595 1.21294 0.97951 0.94375 0.98440 1.21286 0.93880 1.00361 1.00622 1.21500 0.98684 0.93944 0.98038 1.20002 0.94504 0.94176 1.02241 0.91684 0.94920 0.95084 0.74495 0.75656 0.73570 0.89016 0.86759 0.88172 0.83822 0.84124 0.83393 0.86151 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.53 13.29 21.45 0.28 -54.24 16 2 C 0.02 1.14 5.46 84.65 0.46 1.60 16 3 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -32.80 9.39 25.60 0.24 -32.56 16 8 H 0.04 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.28 16.13 6.19 85.63 0.53 16.66 16 10 N -0.37 -18.11 3.63 -348.95 -1.27 -19.37 16 11 N -0.29 -12.37 12.45 -56.46 -0.70 -13.07 16 12 C 0.10 3.15 11.87 85.65 1.02 4.16 16 13 C -0.34 -11.67 6.14 -21.29 -0.13 -11.80 16 14 C 0.34 14.99 8.04 134.15 1.08 16.06 16 15 N -0.60 -25.36 10.47 -198.10 -2.07 -27.43 16 16 C 0.38 11.95 12.24 180.87 2.21 14.16 16 17 N -0.61 -17.30 7.71 -197.01 -1.52 -18.82 16 18 C 0.52 14.14 5.69 133.64 0.76 14.90 16 19 N -0.68 -12.12 4.75 -329.81 -1.57 -13.69 16 20 C 0.20 3.07 2.37 43.67 0.10 3.18 16 21 H 0.10 1.81 7.45 -2.38 -0.02 1.79 16 22 C -0.12 -1.07 5.26 30.40 0.16 -0.91 16 23 C -0.09 -0.75 6.53 72.16 0.47 -0.27 16 24 S -0.13 -1.88 21.99 -56.49 -1.24 -3.13 16 25 C -0.08 -1.45 6.05 22.59 0.14 -1.31 16 26 C -0.11 -2.07 9.65 22.49 0.22 -1.85 16 27 C -0.10 -1.88 10.06 22.18 0.22 -1.65 16 28 C -0.14 -3.22 10.03 22.18 0.22 -3.00 16 29 C -0.10 -2.49 8.81 22.42 0.20 -2.29 16 30 C -0.10 -2.04 5.64 -19.82 -0.11 -2.15 16 31 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.03 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.03 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.24 4.30 8.06 -2.91 -0.02 4.28 16 35 H 0.23 5.32 8.06 -2.91 -0.02 5.30 16 36 H 0.42 5.44 8.47 -92.71 -0.79 4.65 16 37 H 0.09 0.76 8.03 -2.39 -0.02 0.74 16 38 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.10 0.80 8.08 -2.39 -0.02 0.78 16 40 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.14 2.03 8.05 -2.91 -0.02 2.01 16 42 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 44 H 0.11 3.17 4.17 -2.91 -0.01 3.16 16 Total: -1.00 -76.81 379.72 2.01 -74.80 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.28 Total: 14.90 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 7.79 Total: 12.94 kcal Atomic # 7 Polarization: -139.79 SS G_CDS: -6.84 Total: -146.63 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: -1.88 SS G_CDS: -1.24 Total: -3.13 kcal Total: -76.81 2.01 -74.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.975 kcal (2) G-P(sol) polarization free energy of solvation -76.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds