Wall clock time and date at job start Tue Mar 31 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99471 * 2 1 4 4 H 1.48502 * 109.47472 * 270.00135 * 3 2 1 5 5 H 1.48492 * 109.47268 * 30.00347 * 3 2 1 6 6 H 1.48504 * 109.47001 * 150.00364 * 3 2 1 7 7 C 1.37875 * 120.00759 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00364 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99633 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46883 * 180.02562 * 9 7 2 11 11 N 1.40063 * 125.87338 * 89.97885 * 10 9 7 12 12 C 1.30243 * 109.69454 * 179.97438 * 11 10 9 13 13 C 1.41172 * 108.47219 * 359.97438 * 12 11 10 14 14 C 1.36314 * 125.86964 * 269.97064 * 10 9 7 15 15 N 1.33193 * 134.62312 * 0.02562 * 14 10 9 16 16 C 1.31498 * 120.68547 * 179.97438 * 15 14 10 17 17 N 1.32131 * 122.64885 * 359.77594 * 16 15 14 18 18 C 1.32861 * 121.18871 * 0.47819 * 17 16 15 19 19 N 1.38107 * 120.80978 * 179.79934 * 18 17 16 20 20 C 1.46497 * 120.00489 * 359.71936 * 19 18 17 21 21 H 1.09002 * 108.61809 * 36.94359 * 20 19 18 22 22 C 1.51880 * 108.66770 * 155.00141 * 20 19 18 23 23 C 1.53533 * 108.95967 * 181.42383 * 22 20 19 24 24 S 1.81611 * 107.30426 * 287.37612 * 23 22 20 25 25 C 1.76461 * 102.62882 * 46.40707 * 24 23 22 26 26 C 1.39634 * 117.72243 * 167.20840 * 25 24 23 27 27 C 1.37745 * 120.62400 * 179.35800 * 26 25 24 28 28 C 1.38338 * 119.51128 * 359.97438 * 27 26 25 29 29 C 1.37767 * 120.01263 * 359.79867 * 28 27 26 30 30 C 1.38175 * 122.30190 * 346.77496 * 25 24 23 31 31 H 0.97001 * 120.00638 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.47252 * 60.00070 * 9 7 2 33 33 H 1.09004 * 109.46565 * 300.00154 * 9 7 2 34 34 H 1.08001 * 125.76899 * 180.02562 * 12 11 10 35 35 H 1.08001 * 118.67887 * 180.02562 * 16 15 14 36 36 H 0.97008 * 119.99303 * 179.71596 * 19 18 17 37 37 H 1.08998 * 109.55294 * 61.57804 * 22 20 19 38 38 H 1.09001 * 109.55200 * 301.26465 * 22 20 19 39 39 H 1.09000 * 109.88655 * 167.93033 * 23 22 20 40 40 H 1.08993 * 109.95369 * 46.86043 * 23 22 20 41 41 H 1.07996 * 119.68535 * 359.38156 * 26 25 24 42 42 H 1.08002 * 120.24007 * 179.71065 * 27 26 25 43 43 H 1.08004 * 119.99459 * 180.02562 * 28 27 26 44 44 H 1.08000 * 119.46965 * 180.42966 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6179 0.0000 4 1 2.4964 2.0467 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 7 2.7371 -4.2361 1.1344 12 6 3.5495 -5.1872 0.7715 13 6 3.5850 -5.2311 -0.6391 14 6 2.7220 -4.2200 -1.1052 15 7 2.5788 -4.0529 -2.4188 16 6 3.2316 -4.8164 -3.2674 17 7 4.0555 -5.7730 -2.8776 18 6 4.2614 -6.0208 -1.5887 19 7 5.1213 -7.0253 -1.1900 20 6 5.8148 -7.8370 -2.1931 21 1 6.0834 -7.1969 -3.0335 22 6 7.0880 -8.3891 -1.5761 23 6 7.8385 -9.2120 -2.6330 24 16 6.9116 -10.7550 -2.8746 25 6 5.2472 -10.1867 -3.0187 26 6 4.2904 -11.0905 -3.4849 27 6 2.9710 -10.7142 -3.6081 28 6 2.5944 -9.4280 -3.2652 29 6 3.5351 -8.5352 -2.8006 30 6 4.8744 -8.8999 -2.6804 31 1 -0.4851 0.8400 0.0004 32 1 0.6242 -2.5568 -0.8902 33 1 0.6249 -2.5570 0.8897 34 1 4.1020 -5.8337 1.4372 35 1 3.0916 -4.6524 -4.3257 36 1 5.2660 -7.1933 -0.2456 37 1 6.8360 -9.0266 -0.7286 38 1 7.7178 -7.5652 -1.2404 39 1 8.8459 -9.4356 -2.2821 40 1 7.8869 -8.6579 -3.5703 41 1 4.5875 -12.0941 -3.7509 42 1 2.2369 -11.4169 -3.9737 43 1 1.5620 -9.1248 -3.3584 44 1 3.2302 -7.5354 -2.5288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065520139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:59 Heat of formation + Delta-G solvation = 158.289865 kcal Electronic energy + Delta-G solvation = -29875.332979 eV Core-core repulsion = 25920.733366 eV Total energy + Delta-G solvation = -3954.599613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.116 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.60262 -40.00441 -38.42768 -37.12071 -34.63797 -33.63929 -31.97296 -31.42555 -30.95814 -30.94104 -29.53821 -27.35966 -26.24679 -24.13585 -23.42558 -23.36023 -22.83876 -22.36634 -20.87543 -20.18956 -18.10389 -17.94335 -17.58018 -16.72163 -16.49118 -16.21381 -15.97647 -15.76257 -15.25347 -14.90282 -14.60752 -14.32372 -14.25114 -13.87133 -13.84781 -13.47497 -13.42053 -13.35012 -12.99871 -12.83446 -12.60122 -12.20579 -11.84746 -11.69287 -11.51386 -11.48787 -11.11986 -11.02896 -10.87569 -10.80016 -10.36790 -10.31297 -10.17315 -9.89384 -9.87609 -9.37333 -8.92344 -8.76675 -8.62719 -8.32564 -7.73133 -7.66508 -6.24846 -4.31586 0.98081 1.18858 1.21336 1.27989 1.81945 2.04917 2.79279 2.93750 3.02181 3.22524 3.28166 3.33303 3.57041 4.13368 4.20045 4.28035 4.30920 4.42297 4.47521 4.66925 4.72752 4.78691 4.81420 4.91132 5.07734 5.09087 5.10923 5.15545 5.19801 5.32324 5.41277 5.46876 5.56537 5.63035 5.68189 5.84514 6.08530 6.20761 6.28944 6.44049 6.59361 6.73760 6.82281 6.98780 7.04361 7.10872 7.41347 7.66853 7.82634 7.87461 8.15418 8.66131 8.74634 9.33643 10.83391 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.002297 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.477464 B =12185.547728 C =12737.103678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.330 5.330 11 N -0.240 5.240 12 C 0.069 3.931 13 C -0.337 4.337 14 C 0.364 3.636 15 N -0.550 5.550 16 C 0.365 3.635 17 N -0.615 5.615 18 C 0.508 3.492 19 N -0.701 5.701 20 C 0.195 3.805 21 H 0.105 0.895 22 C -0.132 4.132 23 C -0.099 4.099 24 S -0.130 6.130 25 C -0.071 4.071 26 C -0.109 4.109 27 C -0.103 4.103 28 C -0.126 4.126 29 C -0.084 4.084 30 C -0.095 4.095 31 H 0.268 0.732 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.183 0.817 35 H 0.196 0.804 36 H 0.412 0.588 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.171 -22.546 -6.046 26.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.146 3.854 10 N -0.117 5.117 11 N -0.056 5.056 12 C -0.126 4.126 13 C -0.354 4.354 14 C 0.116 3.884 15 N -0.274 5.274 16 C 0.071 3.929 17 N -0.347 5.347 18 C 0.257 3.743 19 N -0.333 5.333 20 C 0.089 3.911 21 H 0.123 0.877 22 C -0.171 4.171 23 C -0.247 4.247 24 S 0.111 5.889 25 C -0.184 4.184 26 C -0.132 4.132 27 C -0.122 4.122 28 C -0.146 4.146 29 C -0.104 4.104 30 C -0.103 4.103 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.200 0.800 35 H 0.212 0.788 36 H 0.249 0.751 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.135 0.865 40 H 0.115 0.885 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.766 -22.546 -6.037 26.604 hybrid contribution 0.284 1.636 0.503 1.735 sum 13.051 -20.911 -5.534 25.263 Atomic orbital electron populations 1.69910 1.06008 1.27686 1.49237 1.24893 0.94980 0.99366 0.94405 0.86345 0.79661 0.82204 0.78392 1.20254 1.20805 1.19787 1.21231 0.93524 0.89644 1.52878 0.92064 1.19816 0.85665 0.79827 1.00043 1.49497 1.35715 1.27673 0.98767 1.76961 1.11319 1.08002 1.09341 1.23382 0.99095 0.97864 0.92283 1.19598 1.12535 1.07933 0.95370 1.18944 0.91076 0.89847 0.88523 1.67525 1.29570 1.30378 0.99976 1.24445 0.85301 0.83866 0.99267 1.68050 1.26762 1.25590 1.14254 1.17843 0.84211 0.83850 0.88355 1.44391 1.46398 1.33721 1.08839 1.19422 0.88961 0.90430 0.92243 0.87706 1.21875 0.95651 1.01128 0.98457 1.23685 1.01599 0.96604 1.02857 1.85512 0.98369 1.13558 1.91426 1.21276 0.96694 0.95953 1.04443 1.20804 0.92593 0.98884 1.00920 1.21046 0.95419 0.96454 0.99315 1.21155 0.99805 0.93784 0.99836 1.21803 0.91926 1.00575 0.96133 1.19925 0.95665 0.92932 1.01758 0.92220 0.92211 0.92760 0.80036 0.78778 0.75127 0.89596 0.88834 0.86518 0.88534 0.85795 0.85662 0.86028 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.07 9.39 -34.44 -0.32 -15.39 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.26 6.91 6.19 -5.19 -0.03 6.88 16 10 N -0.33 -7.70 3.63 -61.64 -0.22 -7.93 16 11 N -0.24 -5.00 12.45 30.80 0.38 -4.62 16 12 C 0.07 1.12 11.87 -17.11 -0.20 0.91 16 13 C -0.34 -5.77 6.14 -106.81 -0.66 -6.42 16 14 C 0.36 7.71 8.04 -156.23 -1.26 6.46 16 15 N -0.55 -11.09 10.47 -13.97 -0.15 -11.24 16 16 C 0.36 5.77 12.24 -92.12 -1.13 4.64 16 17 N -0.62 -8.98 7.37 -13.62 -0.10 -9.08 16 18 C 0.51 7.21 5.65 -154.85 -0.88 6.34 16 19 N -0.70 -7.22 4.86 -55.59 -0.27 -7.49 16 20 C 0.19 1.81 2.37 -69.97 -0.17 1.65 16 21 H 0.11 1.11 7.58 -51.93 -0.39 0.72 16 22 C -0.13 -0.85 5.23 -27.02 -0.14 -0.99 16 23 C -0.10 -0.60 6.52 37.43 0.24 -0.36 16 24 S -0.13 -1.11 21.99 -107.50 -2.36 -3.48 16 25 C -0.07 -0.73 6.05 -39.08 -0.24 -0.97 16 26 C -0.11 -1.08 9.65 -39.24 -0.38 -1.46 16 27 C -0.10 -1.00 10.06 -39.72 -0.40 -1.40 16 28 C -0.13 -1.40 10.03 -39.72 -0.40 -1.80 16 29 C -0.08 -1.04 8.66 -39.35 -0.34 -1.38 16 30 C -0.10 -1.04 5.63 -104.55 -0.59 -1.63 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 32 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.18 1.98 8.06 -52.49 -0.42 1.55 16 35 H 0.20 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.41 3.37 8.43 -40.82 -0.34 3.03 16 37 H 0.09 0.55 8.03 -51.93 -0.42 0.13 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.58 8.08 -51.93 -0.42 0.16 16 41 H 0.12 1.03 8.05 -52.49 -0.42 0.61 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 44 H 0.14 1.92 3.73 -52.49 -0.20 1.73 16 LS Contribution 378.95 15.07 5.71 5.71 Total: -1.00 -32.64 378.95 -13.39 -46.04 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.12 Total: 3.54 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -6.98 Total: -3.15 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: 0.38 Total: -65.16 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.36 Total: -3.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.64 -13.39 -46.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.325 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds