Wall clock time and date at job start Tue Mar 31 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99471 * 2 1 4 4 H 1.48502 * 109.47472 * 270.00135 * 3 2 1 5 5 H 1.48492 * 109.47268 * 30.00347 * 3 2 1 6 6 H 1.48504 * 109.47001 * 150.00364 * 3 2 1 7 7 C 1.37875 * 120.00759 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00364 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99633 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46883 * 180.02562 * 9 7 2 11 11 N 1.40063 * 125.87338 * 89.97885 * 10 9 7 12 12 C 1.30243 * 109.69454 * 179.97438 * 11 10 9 13 13 C 1.41172 * 108.47219 * 359.97438 * 12 11 10 14 14 C 1.36314 * 125.86964 * 269.97064 * 10 9 7 15 15 N 1.33193 * 134.62312 * 0.02562 * 14 10 9 16 16 C 1.31498 * 120.68547 * 179.97438 * 15 14 10 17 17 N 1.32131 * 122.64885 * 359.77594 * 16 15 14 18 18 C 1.32861 * 121.18871 * 0.47819 * 17 16 15 19 19 N 1.38107 * 120.80978 * 179.79934 * 18 17 16 20 20 C 1.46497 * 120.00489 * 359.71936 * 19 18 17 21 21 H 1.09002 * 108.61809 * 36.94359 * 20 19 18 22 22 C 1.51880 * 108.66770 * 155.00141 * 20 19 18 23 23 C 1.53533 * 108.95967 * 181.42383 * 22 20 19 24 24 S 1.81611 * 107.30426 * 287.37612 * 23 22 20 25 25 C 1.76461 * 102.62882 * 46.40707 * 24 23 22 26 26 C 1.39634 * 117.72243 * 167.20840 * 25 24 23 27 27 C 1.37745 * 120.62400 * 179.35800 * 26 25 24 28 28 C 1.38338 * 119.51128 * 359.97438 * 27 26 25 29 29 C 1.37767 * 120.01263 * 359.79867 * 28 27 26 30 30 C 1.38175 * 122.30190 * 346.77496 * 25 24 23 31 31 H 0.97001 * 120.00638 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.47252 * 60.00070 * 9 7 2 33 33 H 1.09004 * 109.46565 * 300.00154 * 9 7 2 34 34 H 1.08001 * 125.76899 * 180.02562 * 12 11 10 35 35 H 1.08001 * 118.67887 * 180.02562 * 16 15 14 36 36 H 0.97008 * 119.99303 * 179.71596 * 19 18 17 37 37 H 1.08998 * 109.55294 * 61.57804 * 22 20 19 38 38 H 1.09001 * 109.55200 * 301.26465 * 22 20 19 39 39 H 1.09000 * 109.88655 * 167.93033 * 23 22 20 40 40 H 1.08993 * 109.95369 * 46.86043 * 23 22 20 41 41 H 1.07996 * 119.68535 * 359.38156 * 26 25 24 42 42 H 1.08002 * 120.24007 * 179.71065 * 27 26 25 43 43 H 1.08004 * 119.99459 * 180.02562 * 28 27 26 44 44 H 1.08000 * 119.46965 * 180.42966 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6179 0.0000 4 1 2.4964 2.0467 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 7 2.7371 -4.2361 1.1344 12 6 3.5495 -5.1872 0.7715 13 6 3.5850 -5.2311 -0.6391 14 6 2.7220 -4.2200 -1.1052 15 7 2.5788 -4.0529 -2.4188 16 6 3.2316 -4.8164 -3.2674 17 7 4.0555 -5.7730 -2.8776 18 6 4.2614 -6.0208 -1.5887 19 7 5.1213 -7.0253 -1.1900 20 6 5.8148 -7.8370 -2.1931 21 1 6.0834 -7.1969 -3.0335 22 6 7.0880 -8.3891 -1.5761 23 6 7.8385 -9.2120 -2.6330 24 16 6.9116 -10.7550 -2.8746 25 6 5.2472 -10.1867 -3.0187 26 6 4.2904 -11.0905 -3.4849 27 6 2.9710 -10.7142 -3.6081 28 6 2.5944 -9.4280 -3.2652 29 6 3.5351 -8.5352 -2.8006 30 6 4.8744 -8.8999 -2.6804 31 1 -0.4851 0.8400 0.0004 32 1 0.6242 -2.5568 -0.8902 33 1 0.6249 -2.5570 0.8897 34 1 4.1020 -5.8337 1.4372 35 1 3.0916 -4.6524 -4.3257 36 1 5.2660 -7.1933 -0.2456 37 1 6.8360 -9.0266 -0.7286 38 1 7.7178 -7.5652 -1.2404 39 1 8.8459 -9.4356 -2.2821 40 1 7.8869 -8.6579 -3.5703 41 1 4.5875 -12.0941 -3.7509 42 1 2.2369 -11.4169 -3.9737 43 1 1.5620 -9.1248 -3.3584 44 1 3.2302 -7.5354 -2.5288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065520139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:58 Heat of formation + Delta-G solvation = 140.819165 kcal Electronic energy + Delta-G solvation = -29876.090565 eV Core-core repulsion = 25920.733366 eV Total energy + Delta-G solvation = -3955.357199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.116 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.94890 -40.93539 -39.65902 -38.03020 -35.92215 -35.31199 -33.46336 -32.85665 -31.84391 -31.67743 -30.75184 -29.20088 -27.16676 -25.58330 -25.07555 -24.08256 -23.81369 -23.53606 -21.66656 -21.60389 -19.37723 -18.88698 -18.79534 -18.71572 -17.76013 -17.09770 -16.96984 -16.64553 -16.48966 -16.42431 -15.72518 -15.50428 -15.32890 -15.13029 -14.96831 -14.63873 -14.43535 -14.11959 -14.01351 -13.81245 -13.72110 -13.61566 -13.25753 -13.05963 -12.77463 -12.71695 -12.44935 -12.36289 -12.28668 -12.26880 -11.88377 -11.61673 -11.54795 -11.02326 -10.77143 -10.68125 -10.61955 -10.10086 -9.81097 -9.74284 -9.06953 -8.36511 -8.34015 -6.53606 -0.09006 0.20343 0.37346 0.47812 0.64422 1.31577 1.35441 1.37560 1.43273 1.48502 1.60749 1.89679 2.30762 2.75069 2.93069 2.94781 3.20115 3.36045 3.48525 3.59984 3.64859 3.68738 3.89653 4.02229 4.07539 4.16973 4.25564 4.36170 4.44044 4.45779 4.57017 4.70165 4.79199 4.81761 4.84935 4.88331 4.98529 5.03162 5.15398 5.29039 5.45452 5.46178 5.51220 5.61727 5.70051 5.76613 5.89058 5.96398 6.05537 6.50517 6.54099 6.74004 7.15958 7.40039 8.71165 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.002297 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.477464 B =12185.547728 C =12737.103678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.551 4.551 8 H 0.046 0.954 9 C 0.285 3.715 10 N -0.366 5.366 11 N -0.288 5.288 12 C 0.100 3.900 13 C -0.343 4.343 14 C 0.339 3.661 15 N -0.600 5.600 16 C 0.374 3.626 17 N -0.608 5.608 18 C 0.522 3.478 19 N -0.677 5.677 20 C 0.196 3.804 21 H 0.096 0.904 22 C -0.124 4.124 23 C -0.093 4.093 24 S -0.136 6.136 25 C -0.079 4.079 26 C -0.116 4.116 27 C -0.101 4.101 28 C -0.141 4.141 29 C -0.105 4.105 30 C -0.102 4.102 31 H 0.274 0.726 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.239 0.761 35 H 0.227 0.773 36 H 0.425 0.575 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.143 0.857 40 H 0.099 0.901 41 H 0.140 0.860 42 H 0.148 0.852 43 H 0.122 0.878 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.493 -24.442 -6.308 30.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.590 4.590 8 H 0.064 0.936 9 C 0.166 3.834 10 N -0.152 5.152 11 N -0.103 5.103 12 C -0.094 4.094 13 C -0.361 4.361 14 C 0.092 3.908 15 N -0.328 5.328 16 C 0.082 3.918 17 N -0.339 5.339 18 C 0.270 3.730 19 N -0.309 5.309 20 C 0.091 3.909 21 H 0.114 0.886 22 C -0.163 4.163 23 C -0.242 4.242 24 S 0.106 5.894 25 C -0.191 4.191 26 C -0.138 4.138 27 C -0.121 4.121 28 C -0.161 4.161 29 C -0.125 4.125 30 C -0.110 4.110 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.255 0.745 35 H 0.243 0.757 36 H 0.265 0.735 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.161 0.839 40 H 0.118 0.882 41 H 0.157 0.843 42 H 0.166 0.834 43 H 0.140 0.860 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 16.138 -24.517 -6.289 30.018 hybrid contribution -0.624 1.940 0.455 2.088 sum 15.514 -22.578 -5.835 28.009 Atomic orbital electron populations 1.70008 1.07401 1.28915 1.49450 1.25797 0.95898 1.02873 0.93567 0.85309 0.78341 0.77782 0.78750 1.19449 1.19358 1.19592 1.21378 0.92880 0.91132 1.53579 0.93557 1.19118 0.85943 0.80911 0.97427 1.49103 1.37176 1.28483 1.00435 1.76906 1.13968 1.10352 1.09101 1.24280 0.96520 0.95983 0.92665 1.19704 1.12535 1.07724 0.96129 1.19339 0.91899 0.90803 0.88750 1.67527 1.32067 1.32889 1.00269 1.25124 0.83881 0.82713 1.00084 1.68207 1.26441 1.24991 1.14278 1.17880 0.83737 0.83821 0.87611 1.44463 1.44436 1.31929 1.10114 1.19573 0.89744 0.89694 0.91866 0.88619 1.21864 0.94146 1.01872 0.98464 1.23820 1.02243 0.95032 1.03057 1.85560 0.97321 1.15327 1.91204 1.21498 0.98096 0.95721 1.03825 1.21116 0.92654 0.99622 1.00450 1.21302 0.96087 0.96165 0.98542 1.21293 0.99881 0.94544 1.00375 1.21730 0.93081 0.99965 0.97719 1.19996 0.95263 0.93593 1.02125 0.91690 0.94971 0.95144 0.74469 0.75677 0.73503 0.88931 0.86777 0.83866 0.88226 0.84252 0.83396 0.85954 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.55 13.29 21.45 0.28 -54.26 16 2 C 0.02 1.11 5.46 84.66 0.46 1.58 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.55 -32.70 9.39 25.60 0.24 -32.46 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.28 16.12 6.19 85.63 0.53 16.65 16 10 N -0.37 -18.06 3.63 -348.92 -1.27 -19.33 16 11 N -0.29 -12.34 12.45 -56.46 -0.70 -13.04 16 12 C 0.10 3.14 11.87 85.65 1.02 4.16 16 13 C -0.34 -11.63 6.14 -21.29 -0.13 -11.76 16 14 C 0.34 14.95 8.04 134.15 1.08 16.03 16 15 N -0.60 -25.25 10.47 -198.10 -2.07 -27.32 16 16 C 0.37 11.89 12.24 180.87 2.21 14.10 16 17 N -0.61 -17.22 7.37 -197.02 -1.45 -18.68 16 18 C 0.52 14.10 5.65 133.64 0.76 14.86 16 19 N -0.68 -12.09 4.86 -329.80 -1.60 -13.70 16 20 C 0.20 3.10 2.37 43.67 0.10 3.20 16 21 H 0.10 1.77 7.58 -2.39 -0.02 1.75 16 22 C -0.12 -1.09 5.23 30.41 0.16 -0.93 16 23 C -0.09 -0.77 6.52 72.16 0.47 -0.30 16 24 S -0.14 -1.91 21.99 -56.49 -1.24 -3.16 16 25 C -0.08 -1.45 6.05 22.59 0.14 -1.32 16 26 C -0.12 -2.06 9.65 22.49 0.22 -1.84 16 27 C -0.10 -1.81 10.06 22.18 0.22 -1.59 16 28 C -0.14 -3.05 10.03 22.18 0.22 -2.83 16 29 C -0.10 -2.48 8.66 22.42 0.19 -2.29 16 30 C -0.10 -2.03 5.63 -19.82 -0.11 -2.14 16 31 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.03 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.03 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.24 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.23 5.32 8.06 -2.91 -0.02 5.29 16 36 H 0.43 5.35 8.43 -92.70 -0.78 4.57 16 37 H 0.09 0.77 8.03 -2.39 -0.02 0.75 16 38 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.10 0.83 8.08 -2.39 -0.02 0.81 16 41 H 0.14 1.99 8.05 -2.91 -0.02 1.96 16 42 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 43 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 44 H 0.12 3.24 3.73 -2.91 -0.01 3.23 16 Total: -1.00 -76.56 378.95 2.04 -74.53 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.28 Total: 14.97 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 7.78 Total: 13.14 kcal Atomic # 7 Polarization: -139.51 SS G_CDS: -6.81 Total: -146.33 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: -1.91 SS G_CDS: -1.24 Total: -3.16 kcal Total: -76.56 2.04 -74.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.347 kcal (2) G-P(sol) polarization free energy of solvation -76.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds