Wall clock time and date at job start Tue Mar 31 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.38109 * 119.99599 * 84.72033 * 4 2 1 6 6 N 1.32862 * 120.81817 * 0.27956 * 5 4 2 7 7 C 1.32122 * 121.19471 * 179.97438 * 6 5 4 8 8 N 1.31504 * 122.64570 * 0.02562 * 7 6 5 9 9 C 1.33191 * 120.68561 * 359.97438 * 8 7 6 10 10 C 1.40819 * 120.81200 * 179.97438 * 5 4 2 11 11 C 1.41166 * 134.69421 * 0.02562 * 10 5 4 12 12 N 1.30258 * 108.47029 * 180.02562 * 11 10 5 13 13 N 1.36313 * 134.61659 * 180.02562 * 9 8 7 14 14 C 1.46496 * 125.87338 * 359.97438 * 13 9 8 15 15 C 1.50703 * 109.47490 * 89.99481 * 14 13 9 16 16 H 1.08003 * 119.99769 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00208 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00233 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99881 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46920 * 89.99916 * 19 17 15 21 21 H 1.48498 * 109.47205 * 209.99594 * 19 17 15 22 22 H 1.48501 * 109.47195 * 330.00354 * 19 17 15 23 23 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 24 24 C 1.38257 * 119.93141 * 80.00252 * 23 2 1 25 25 C 1.38230 * 120.14491 * 179.97438 * 24 23 2 26 26 C 1.38542 * 120.03238 * 0.02562 * 25 24 23 27 27 C 1.39264 * 119.82906 * 359.97438 * 26 25 24 28 28 C 1.38237 * 119.93055 * 259.72324 * 23 2 1 29 29 O 1.36498 * 108.64489 * 179.97438 * 27 26 25 30 30 C 1.43994 * 105.48163 * 342.71714 * 29 27 26 31 31 O 1.36506 * 131.53341 * 179.97438 * 26 25 24 32 32 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 33 33 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 34 34 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 35 35 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 36 36 H 1.08003 * 118.67738 * 180.02562 * 7 6 5 37 37 H 1.08001 * 125.76706 * 0.02799 * 11 10 5 38 38 H 1.09009 * 109.46866 * 209.99548 * 14 13 9 39 39 H 1.08997 * 109.47225 * 329.99215 * 14 13 9 40 40 H 0.96999 * 120.00147 * 180.02562 * 18 17 15 41 41 H 1.08004 * 119.92117 * 359.95224 * 24 23 2 42 42 H 1.08002 * 119.98346 * 179.97438 * 25 24 23 43 43 H 1.07999 * 119.98581 * 359.97438 * 28 23 2 44 44 H 1.08997 * 110.57431 * 268.55545 * 30 29 27 45 45 H 1.09001 * 110.56964 * 145.67797 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1448 -0.0029 -2.3872 6 7 1.8334 1.2863 -2.4652 7 6 1.9519 1.9515 -3.6005 8 7 2.3786 1.3900 -4.7105 9 6 2.7157 0.1017 -4.7344 10 6 2.6129 -0.6495 -3.5472 11 6 3.0346 -1.9621 -3.8506 12 7 3.3710 -2.0072 -5.1082 13 7 3.1789 -0.7492 -5.6935 14 6 3.4459 -0.4031 -7.0917 15 6 4.8734 0.0594 -7.2310 16 1 5.5175 0.0919 -6.3647 17 6 5.3575 0.4401 -8.4646 18 7 6.6033 0.8433 -8.5862 19 14 4.2440 0.3819 -9.9634 20 1 3.5458 1.6840 -10.1122 21 1 5.0594 0.1162 -11.1758 22 1 3.2417 -0.7006 -9.7937 23 6 2.0323 -0.7104 1.2304 24 6 2.0661 -2.0922 1.2637 25 6 2.5265 -2.7483 2.3899 26 6 2.9551 -2.0220 3.4890 27 6 2.9210 -0.6301 3.4556 28 6 2.4637 0.0209 2.3213 29 8 3.3891 -0.1535 4.6460 30 6 3.3255 -1.2665 5.5574 31 8 3.4450 -2.4174 4.7002 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 2.2490 -1.6318 -1.1527 36 1 1.6877 2.9986 -3.6178 37 1 3.0719 -2.7893 -3.1572 38 1 3.2848 -1.2792 -7.7200 39 1 2.7730 0.3959 -7.4031 40 1 6.9437 1.1114 -9.4540 41 1 1.7317 -2.6600 0.4080 42 1 2.5515 -3.8278 2.4132 43 1 2.4408 1.1002 2.2908 44 1 2.3706 -1.2772 6.0828 45 1 4.1532 -1.2292 6.2657 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065520153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:14 Heat of formation + Delta-G solvation = 94.230334 kcal Electronic energy + Delta-G solvation = -31534.597018 eV Core-core repulsion = 27134.466705 eV Total energy + Delta-G solvation = -4400.130313 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.57897 -41.47281 -39.39607 -38.34096 -36.70214 -36.38697 -33.90836 -32.98444 -31.63858 -31.41507 -30.83797 -29.47311 -28.78594 -27.72373 -26.27566 -24.37354 -24.01727 -23.49059 -23.06671 -22.38726 -21.32904 -20.10444 -18.38594 -18.34153 -17.96915 -17.76185 -17.10824 -17.01528 -16.79951 -16.22059 -15.47316 -15.24441 -14.95533 -14.87714 -14.45120 -14.27792 -14.13369 -13.98020 -13.87456 -13.70406 -13.64884 -13.39880 -13.26360 -13.08818 -12.74591 -12.45543 -12.12951 -12.03489 -11.87542 -11.47239 -11.22667 -11.18265 -11.00988 -10.98773 -10.69875 -10.28224 -10.14436 -9.69409 -9.36776 -9.25738 -8.74723 -8.72772 -8.46619 -8.28874 -7.69846 -6.21537 -4.24156 0.65274 0.78230 1.24937 1.87569 2.31178 2.77974 2.90792 2.99334 3.05158 3.21258 3.22144 3.27113 3.29165 4.04690 4.17820 4.21610 4.26633 4.33407 4.45747 4.49831 4.60513 4.66671 4.69969 4.77655 4.89813 5.01534 5.06622 5.09713 5.10153 5.14331 5.40489 5.50580 5.57638 5.63016 5.65085 5.69032 5.77197 5.87919 5.97483 6.08417 6.26503 6.49971 6.53486 6.68218 6.84214 6.87644 7.16733 7.31075 7.40331 7.79018 8.11176 8.31417 8.73997 8.80852 9.33172 10.91175 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.018832 B = 0.001885 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.468292 B =14851.431273 C =15207.386035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.198 3.802 3 H 0.106 0.894 4 N -0.701 5.701 5 C 0.513 3.487 6 N -0.616 5.616 7 C 0.370 3.630 8 N -0.556 5.556 9 C 0.367 3.633 10 C -0.335 4.335 11 C 0.072 3.928 12 N -0.240 5.240 13 N -0.332 5.332 14 C 0.237 3.763 15 C -0.538 4.538 16 H 0.078 0.922 17 C 0.079 3.921 18 N -0.887 5.887 19 Si 0.875 3.125 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.264 1.264 23 C -0.079 4.079 24 C -0.103 4.103 25 C -0.094 4.094 26 C 0.030 3.970 27 C 0.035 3.965 28 C -0.086 4.086 29 O -0.308 6.308 30 C 0.213 3.787 31 O -0.310 6.310 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.408 0.592 36 H 0.196 0.804 37 H 0.184 0.816 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.268 0.732 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.085 0.915 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.572 -4.783 27.314 30.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.093 3.907 3 H 0.124 0.876 4 N -0.335 5.335 5 C 0.261 3.739 6 N -0.346 5.346 7 C 0.076 3.924 8 N -0.281 5.281 9 C 0.119 3.881 10 C -0.353 4.353 11 C -0.123 4.123 12 N -0.055 5.055 13 N -0.118 5.118 14 C 0.118 3.882 15 C -0.576 4.576 16 H 0.096 0.904 17 C -0.125 4.125 18 N -0.524 5.524 19 Si 0.701 3.299 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.189 1.189 23 C -0.080 4.080 24 C -0.122 4.122 25 C -0.113 4.113 26 C -0.015 4.015 27 C -0.009 4.009 28 C -0.105 4.105 29 O -0.224 6.224 30 C 0.101 3.899 31 O -0.226 6.226 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.246 0.754 36 H 0.212 0.788 37 H 0.201 0.799 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.102 0.898 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.014 -4.426 26.143 29.537 hybrid contribution -0.141 -0.660 0.140 0.689 sum -13.156 -5.085 26.283 29.828 Atomic orbital electron populations 1.22184 0.93983 1.02374 1.03004 1.19689 0.94164 0.96816 0.80011 0.87634 1.44473 1.70453 1.12379 1.06245 1.17849 0.84317 0.87977 0.83759 1.67939 1.30337 1.06299 1.30039 1.24426 0.87725 0.99189 0.81071 1.67503 1.20823 1.08773 1.30995 1.18895 0.92483 0.89101 0.87571 1.19573 1.21804 0.97660 0.96245 1.23393 0.99379 0.95522 0.94003 1.76956 1.18127 1.01626 1.08822 1.48961 1.49350 1.03577 1.09926 1.20087 0.98932 0.97061 0.72096 1.21104 0.94079 1.45609 0.96808 0.90416 1.24775 0.95110 0.94099 0.98487 1.69868 1.14476 1.43145 1.24957 0.86873 0.80993 0.79356 0.82706 1.19500 1.20548 1.18874 1.19704 0.99652 0.93603 0.95035 1.20706 1.00355 0.93637 0.97498 1.20047 1.00173 1.00425 0.90643 1.19842 1.00608 0.91980 0.89052 1.19727 1.00618 0.91166 0.89401 1.19858 0.99773 1.00815 0.90083 1.87387 1.80754 1.35402 1.18874 1.25650 1.03934 0.70796 0.89480 1.87381 1.79272 1.36261 1.19661 0.91561 0.91009 0.92460 0.75430 0.78750 0.79925 0.93066 0.93050 0.92152 0.84435 0.84430 0.84227 0.89793 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.47 37.16 0.35 -0.83 16 2 C 0.20 1.68 2.80 -69.09 -0.19 1.48 16 3 H 0.11 1.02 7.43 -51.93 -0.39 0.63 16 4 N -0.70 -7.05 5.15 -54.73 -0.28 -7.33 16 5 C 0.51 7.35 7.53 -154.85 -1.17 6.19 16 6 N -0.62 -9.03 9.35 -13.62 -0.13 -9.16 16 7 C 0.37 5.86 12.24 -92.12 -1.13 4.73 16 8 N -0.56 -11.25 10.47 -13.97 -0.15 -11.40 16 9 C 0.37 7.81 8.04 -156.24 -1.26 6.56 16 10 C -0.34 -5.79 6.14 -106.82 -0.66 -6.45 16 11 C 0.07 1.17 11.87 -17.11 -0.20 0.97 16 12 N -0.24 -4.97 12.45 30.80 0.38 -4.59 16 13 N -0.33 -7.68 3.63 -61.65 -0.22 -7.91 16 14 C 0.24 5.91 5.26 -5.19 -0.03 5.88 16 15 C -0.54 -15.59 9.94 -34.44 -0.34 -15.93 16 16 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 17 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 18 N -0.89 -27.03 13.96 55.43 0.77 -26.25 16 19 Si 0.87 20.83 27.47 -169.99 -4.67 16.16 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 23 C -0.08 -0.62 4.96 -104.62 -0.52 -1.14 16 24 C -0.10 -0.71 9.05 -39.58 -0.36 -1.07 16 25 C -0.09 -0.71 10.06 -39.47 -0.40 -1.11 16 26 C 0.03 0.27 7.15 -39.09 -0.28 -0.01 16 27 C 0.04 0.33 7.15 -39.08 -0.28 0.06 16 28 C -0.09 -0.73 9.68 -39.47 -0.38 -1.11 16 29 O -0.31 -2.84 11.40 -45.68 -0.52 -3.36 16 30 C 0.21 1.30 8.89 101.05 0.90 2.20 16 31 O -0.31 -2.78 11.40 -45.71 -0.52 -3.30 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.41 3.27 6.73 -40.82 -0.27 3.00 16 36 H 0.20 2.29 8.06 -52.48 -0.42 1.87 16 37 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.05 1.25 7.20 -51.92 -0.37 0.87 16 39 H 0.05 1.26 7.57 -51.93 -0.39 0.86 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.14 0.65 6.91 -52.48 -0.36 0.29 16 42 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.14 1.01 8.03 -52.49 -0.42 0.59 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -36.19 386.84 -10.72 -46.91 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.18 Total: 1.80 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -6.03 Total: 2.61 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: 0.38 Total: -66.64 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -1.04 Total: -6.66 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.19 -10.72 -46.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.138 kcal (2) G-P(sol) polarization free energy of solvation -36.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds