Wall clock time and date at job start Tue Mar 31 2020 06:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.38109 * 119.99599 * 84.72033 * 4 2 1 6 6 N 1.32862 * 120.81817 * 0.27956 * 5 4 2 7 7 C 1.32122 * 121.19471 * 179.97438 * 6 5 4 8 8 N 1.31504 * 122.64570 * 0.02562 * 7 6 5 9 9 C 1.33191 * 120.68561 * 359.97438 * 8 7 6 10 10 C 1.40819 * 120.81200 * 179.97438 * 5 4 2 11 11 C 1.41166 * 134.69421 * 0.02562 * 10 5 4 12 12 N 1.30258 * 108.47029 * 180.02562 * 11 10 5 13 13 N 1.36313 * 134.61659 * 180.02562 * 9 8 7 14 14 C 1.46496 * 125.87338 * 359.97438 * 13 9 8 15 15 C 1.50703 * 109.47490 * 89.99481 * 14 13 9 16 16 H 1.08003 * 119.99769 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00208 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00233 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99881 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46920 * 89.99916 * 19 17 15 21 21 H 1.48498 * 109.47205 * 209.99594 * 19 17 15 22 22 H 1.48501 * 109.47195 * 330.00354 * 19 17 15 23 23 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 24 24 C 1.38257 * 119.93141 * 80.00252 * 23 2 1 25 25 C 1.38230 * 120.14491 * 179.97438 * 24 23 2 26 26 C 1.38542 * 120.03238 * 0.02562 * 25 24 23 27 27 C 1.39264 * 119.82906 * 359.97438 * 26 25 24 28 28 C 1.38237 * 119.93055 * 259.72324 * 23 2 1 29 29 O 1.36498 * 108.64489 * 179.97438 * 27 26 25 30 30 C 1.43994 * 105.48163 * 342.71714 * 29 27 26 31 31 O 1.36506 * 131.53341 * 179.97438 * 26 25 24 32 32 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 33 33 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 34 34 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 35 35 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 36 36 H 1.08003 * 118.67738 * 180.02562 * 7 6 5 37 37 H 1.08001 * 125.76706 * 0.02799 * 11 10 5 38 38 H 1.09009 * 109.46866 * 209.99548 * 14 13 9 39 39 H 1.08997 * 109.47225 * 329.99215 * 14 13 9 40 40 H 0.96999 * 120.00147 * 180.02562 * 18 17 15 41 41 H 1.08004 * 119.92117 * 359.95224 * 24 23 2 42 42 H 1.08002 * 119.98346 * 179.97438 * 25 24 23 43 43 H 1.07999 * 119.98581 * 359.97438 * 28 23 2 44 44 H 1.08997 * 110.57431 * 268.55545 * 30 29 27 45 45 H 1.09001 * 110.56964 * 145.67797 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1448 -0.0029 -2.3872 6 7 1.8334 1.2863 -2.4652 7 6 1.9519 1.9515 -3.6005 8 7 2.3786 1.3900 -4.7105 9 6 2.7157 0.1017 -4.7344 10 6 2.6129 -0.6495 -3.5472 11 6 3.0346 -1.9621 -3.8506 12 7 3.3710 -2.0072 -5.1082 13 7 3.1789 -0.7492 -5.6935 14 6 3.4459 -0.4031 -7.0917 15 6 4.8734 0.0594 -7.2310 16 1 5.5175 0.0919 -6.3647 17 6 5.3575 0.4401 -8.4646 18 7 6.6033 0.8433 -8.5862 19 14 4.2440 0.3819 -9.9634 20 1 3.5458 1.6840 -10.1122 21 1 5.0594 0.1162 -11.1758 22 1 3.2417 -0.7006 -9.7937 23 6 2.0323 -0.7104 1.2304 24 6 2.0661 -2.0922 1.2637 25 6 2.5265 -2.7483 2.3899 26 6 2.9551 -2.0220 3.4890 27 6 2.9210 -0.6301 3.4556 28 6 2.4637 0.0209 2.3213 29 8 3.3891 -0.1535 4.6460 30 6 3.3255 -1.2665 5.5574 31 8 3.4450 -2.4174 4.7002 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 2.2490 -1.6318 -1.1527 36 1 1.6877 2.9986 -3.6178 37 1 3.0719 -2.7893 -3.1572 38 1 3.2848 -1.2792 -7.7200 39 1 2.7730 0.3959 -7.4031 40 1 6.9437 1.1114 -9.4540 41 1 1.7317 -2.6600 0.4080 42 1 2.5515 -3.8278 2.4132 43 1 2.4408 1.1002 2.2908 44 1 2.3706 -1.2772 6.0828 45 1 4.1532 -1.2292 6.2657 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065520153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:13 Heat of formation + Delta-G solvation = 70.617285 kcal Electronic energy + Delta-G solvation = -31535.620957 eV Core-core repulsion = 27134.466705 eV Total energy + Delta-G solvation = -4401.154252 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.15272 -42.81988 -40.26463 -39.46201 -37.34716 -37.27567 -35.70446 -34.35227 -33.29109 -32.52115 -31.54111 -30.34134 -29.82063 -29.41624 -26.79324 -25.37034 -25.32878 -24.60476 -24.02198 -23.68699 -22.15629 -21.46256 -19.49868 -19.26973 -19.01309 -18.86250 -18.43507 -18.03952 -17.83999 -17.08932 -16.74897 -16.49509 -16.13260 -15.68169 -15.47768 -15.21606 -15.18523 -15.15767 -14.87886 -14.85410 -14.51232 -14.35539 -14.19975 -14.00222 -13.89466 -13.71381 -13.59682 -13.12115 -12.77455 -12.64384 -12.55343 -12.40980 -12.31808 -12.07759 -11.85484 -11.79789 -11.69447 -11.48695 -10.91124 -10.62612 -10.06556 -9.87865 -9.74254 -9.07839 -8.98436 -8.42390 -6.52558 -0.03460 0.04285 0.19465 0.53514 1.28777 1.34706 1.40016 1.47371 1.64547 1.77273 1.97589 2.25376 2.51842 2.56073 2.89391 3.02633 3.27845 3.39685 3.46487 3.55776 3.68815 3.76527 3.81513 4.01577 4.07509 4.08133 4.16211 4.29090 4.38689 4.43924 4.47115 4.52619 4.56945 4.74067 4.82742 4.96943 5.04499 5.06026 5.14357 5.20469 5.21115 5.33056 5.37459 5.48766 5.55452 5.70526 5.88092 6.06916 6.10862 6.21235 6.46562 6.56592 6.76634 7.10084 7.46202 8.74655 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.018832 B = 0.001885 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.468292 B =14851.431273 C =15207.386035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.201 3.799 3 H 0.096 0.904 4 N -0.678 5.678 5 C 0.523 3.477 6 N -0.610 5.610 7 C 0.377 3.623 8 N -0.605 5.605 9 C 0.339 3.661 10 C -0.344 4.344 11 C 0.102 3.898 12 N -0.288 5.288 13 N -0.367 5.367 14 C 0.251 3.749 15 C -0.547 4.547 16 H 0.019 0.981 17 C 0.019 3.981 18 N -0.938 5.938 19 Si 0.954 3.046 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.243 1.243 23 C -0.080 4.080 24 C -0.097 4.097 25 C -0.096 4.096 26 C 0.014 3.986 27 C 0.015 3.985 28 C -0.094 4.094 29 O -0.328 6.328 30 C 0.205 3.795 31 O -0.326 6.326 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.421 0.579 36 H 0.231 0.769 37 H 0.241 0.759 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.274 0.726 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.145 0.855 44 H 0.106 0.894 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.985 -5.953 28.831 33.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.097 3.903 3 H 0.114 0.886 4 N -0.312 5.312 5 C 0.269 3.731 6 N -0.341 5.341 7 C 0.085 3.915 8 N -0.332 5.332 9 C 0.092 3.908 10 C -0.362 4.362 11 C -0.093 4.093 12 N -0.103 5.103 13 N -0.153 5.153 14 C 0.131 3.869 15 C -0.585 4.585 16 H 0.038 0.962 17 C -0.181 4.181 18 N -0.576 5.576 19 Si 0.775 3.225 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.166 1.166 23 C -0.081 4.081 24 C -0.115 4.115 25 C -0.115 4.115 26 C -0.031 4.031 27 C -0.029 4.029 28 C -0.113 4.113 29 O -0.245 6.245 30 C 0.094 3.906 31 O -0.243 6.243 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.261 0.739 36 H 0.247 0.753 37 H 0.257 0.743 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.182 0.818 42 H 0.174 0.826 43 H 0.163 0.837 44 H 0.123 0.877 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.449 -5.631 27.760 32.264 hybrid contribution 0.622 -0.261 0.052 0.676 sum -14.827 -5.892 27.812 32.063 Atomic orbital electron populations 1.22127 0.92725 1.03174 1.02921 1.19735 0.94955 0.96248 0.79349 0.88590 1.44570 1.68474 1.12894 1.05229 1.17929 0.83099 0.87836 0.84287 1.68095 1.30393 1.06363 1.29216 1.25188 0.85551 1.00464 0.80321 1.67515 1.23458 1.09047 1.33189 1.19352 0.92846 0.90005 0.88596 1.19727 1.22611 0.97847 0.95997 1.24302 0.95425 0.96433 0.93130 1.76898 1.21246 1.01138 1.10984 1.48731 1.51851 1.05068 1.09664 1.19642 0.95924 0.96927 0.74438 1.21212 0.95794 1.46300 0.95235 0.96244 1.25853 0.96827 0.93098 1.02276 1.70029 1.16875 1.44419 1.26282 0.85638 0.79003 0.80444 0.77464 1.18325 1.19652 1.16593 1.19595 1.00115 0.94044 0.94378 1.20996 0.99196 0.93258 0.98025 1.20360 0.99488 1.01462 0.90184 1.20177 1.01044 0.92193 0.89639 1.19942 1.01491 0.91630 0.89842 1.20009 0.99774 1.01319 0.90176 1.87345 1.81008 1.36789 1.19329 1.26100 1.06286 0.69290 0.88910 1.87343 1.79490 1.37462 1.19984 0.90214 0.92541 0.91230 0.73879 0.75333 0.74327 0.92582 0.92860 0.91709 0.81815 0.82553 0.83711 0.87684 0.82609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.47 71.98 0.68 -1.12 16 2 C 0.20 2.83 2.80 44.24 0.12 2.95 16 3 H 0.10 1.62 7.43 -2.39 -0.02 1.61 16 4 N -0.68 -11.39 5.15 -327.06 -1.68 -13.07 16 5 C 0.52 13.85 7.53 133.64 1.01 14.85 16 6 N -0.61 -16.85 9.35 -197.01 -1.84 -18.69 16 7 C 0.38 11.63 12.24 180.87 2.21 13.85 16 8 N -0.60 -24.82 10.47 -198.11 -2.07 -26.89 16 9 C 0.34 14.63 8.04 134.15 1.08 15.71 16 10 C -0.34 -11.49 6.14 -21.29 -0.13 -11.62 16 11 C 0.10 3.12 11.87 85.65 1.02 4.13 16 12 N -0.29 -11.98 12.45 -56.46 -0.70 -12.69 16 13 N -0.37 -17.45 3.63 -348.95 -1.27 -18.72 16 14 C 0.25 12.89 5.26 85.64 0.45 13.34 16 15 C -0.55 -33.37 9.94 25.60 0.25 -33.12 16 16 H 0.02 1.36 8.06 -2.91 -0.02 1.33 16 17 C 0.02 1.12 5.47 84.66 0.46 1.58 16 18 N -0.94 -59.37 13.96 21.45 0.30 -59.07 16 19 Si 0.95 43.49 27.47 68.60 1.88 45.38 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 23 C -0.08 -1.04 4.96 -19.86 -0.10 -1.13 16 24 C -0.10 -0.98 9.05 22.27 0.20 -0.78 16 25 C -0.10 -1.19 10.06 22.34 0.22 -0.96 16 26 C 0.01 0.23 7.15 22.59 0.16 0.39 16 27 C 0.02 0.27 7.15 22.59 0.16 0.43 16 28 C -0.09 -1.44 9.68 22.34 0.22 -1.23 16 29 O -0.33 -5.81 11.40 -76.03 -0.87 -6.68 16 30 C 0.20 2.24 8.89 113.37 1.01 3.24 16 31 O -0.33 -5.45 11.40 -76.12 -0.87 -6.32 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.42 4.90 6.73 -92.71 -0.62 4.28 16 36 H 0.23 5.03 8.06 -2.91 -0.02 5.01 16 37 H 0.24 4.04 8.06 -2.91 -0.02 4.01 16 38 H 0.06 2.76 7.20 -2.38 -0.02 2.75 16 39 H 0.05 2.66 7.57 -2.39 -0.02 2.64 16 40 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 41 H 0.16 0.74 6.91 -2.91 -0.02 0.72 16 42 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.15 1.94 8.03 -2.91 -0.02 1.92 16 44 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -85.53 386.84 2.30 -83.23 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.38 Total: 13.01 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 9.03 Total: 20.52 kcal Atomic # 7 Polarization: -141.87 SS G_CDS: -7.27 Total: -149.14 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -1.74 Total: -13.00 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.38 kcal Total: -85.53 2.30 -83.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.848 kcal (2) G-P(sol) polarization free energy of solvation -85.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds