Wall clock time and date at job start Tue Mar 31 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47155 * 2 1 4 4 N 1.46501 * 109.47539 * 120.00068 * 2 1 3 5 5 C 1.38114 * 119.99729 * 275.00135 * 4 2 1 6 6 N 1.32866 * 120.81370 * 0.45826 * 5 4 2 7 7 C 1.32116 * 121.19302 * 180.02562 * 6 5 4 8 8 N 1.31512 * 122.64649 * 359.74702 * 7 6 5 9 9 C 1.33196 * 120.68405 * 359.97438 * 8 7 6 10 10 C 1.40812 * 120.80804 * 179.97438 * 5 4 2 11 11 C 1.41167 * 134.70431 * 0.28782 * 10 5 4 12 12 N 1.30249 * 108.47084 * 179.70675 * 11 10 5 13 13 N 1.36310 * 134.61808 * 179.97438 * 9 8 7 14 14 C 1.46505 * 125.87239 * 359.96128 * 13 9 8 15 15 C 1.50702 * 109.46673 * 90.00164 * 14 13 9 16 16 H 1.08004 * 120.00358 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99651 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00171 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99687 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47272 * 60.00357 * 19 17 15 21 21 H 1.48508 * 109.46879 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47124 * 299.99785 * 19 17 15 23 23 C 1.50699 * 109.47145 * 240.00279 * 2 1 3 24 24 C 1.38260 * 119.92410 * 279.72618 * 23 2 1 25 25 C 1.38241 * 120.14022 * 179.68997 * 24 23 2 26 26 C 1.38547 * 120.02656 * 0.58965 * 25 24 23 27 27 C 1.39258 * 119.83194 * 359.68826 * 26 25 24 28 28 C 1.38230 * 119.93493 * 99.99685 * 23 2 1 29 29 O 1.36501 * 108.64370 * 179.97438 * 27 26 25 30 30 C 1.43990 * 105.48009 * 342.71735 * 29 27 26 31 31 O 1.36504 * 131.52749 * 179.68233 * 26 25 24 32 32 H 1.09000 * 109.46758 * 299.99983 * 1 2 3 33 33 H 1.08993 * 109.47267 * 59.99817 * 1 2 3 34 34 H 1.09003 * 109.46843 * 180.02562 * 1 2 3 35 35 H 0.96997 * 120.00469 * 94.99811 * 4 2 1 36 36 H 1.08003 * 118.67772 * 179.76382 * 7 6 5 37 37 H 1.08002 * 125.76335 * 359.71895 * 11 10 5 38 38 H 1.09001 * 109.47242 * 209.99993 * 14 13 9 39 39 H 1.09004 * 109.46964 * 330.00486 * 14 13 9 40 40 H 0.97008 * 120.00112 * 180.02562 * 18 17 15 41 41 H 1.08000 * 119.92863 * 359.97438 * 24 23 2 42 42 H 1.08001 * 119.98268 * 180.27461 * 25 24 23 43 43 H 1.08004 * 119.97827 * 0.02562 * 28 23 2 44 44 H 1.08991 * 110.57785 * 268.55566 * 30 29 27 45 45 H 1.09003 * 110.56508 * 145.68132 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 2.1504 -0.0016 2.3858 6 7 1.8304 1.2855 2.4660 7 6 1.9541 1.9520 3.6000 8 7 2.3905 1.3929 4.7075 9 6 2.7316 0.1056 4.7304 10 6 2.6176 -0.6485 3.5460 11 6 3.0389 -1.9612 3.8496 12 7 3.3799 -2.0050 5.1059 13 7 3.2041 -0.7428 5.6870 14 6 3.4813 -0.3941 7.0827 15 6 2.2437 -0.6208 7.9123 16 1 1.3412 -0.9882 7.4466 17 6 2.2638 -0.3590 9.2658 18 7 3.3626 0.0889 9.8328 19 14 0.7296 -0.6393 10.2941 20 1 0.3320 -2.0677 10.2108 21 1 1.0106 -0.2860 11.7089 22 1 -0.3731 0.2123 9.7803 23 6 2.0324 -0.7103 -1.2305 24 6 2.0714 -2.0920 -1.2616 25 6 2.5254 -2.7484 -2.3904 26 6 2.9540 -2.0219 -3.4895 27 6 2.9201 -0.6301 -3.4560 28 6 2.4583 0.0209 -2.3235 29 8 3.3894 -0.1534 -4.6459 30 6 4.0920 -1.2550 -5.2510 31 8 3.4442 -2.4173 -4.7006 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 2.2492 -1.6317 1.1526 36 1 1.6859 2.9980 3.6183 37 1 3.0728 -2.7893 3.1570 38 1 4.2908 -1.0192 7.4595 39 1 3.7729 0.6544 7.1441 40 1 3.3768 0.2727 10.7852 41 1 1.7422 -2.6599 -0.4039 42 1 2.5506 -3.8278 -2.4136 43 1 2.4312 1.1002 -2.2945 44 1 5.1458 -1.2361 -4.9735 45 1 3.9798 -1.2316 -6.3350 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065520157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:17 Heat of formation + Delta-G solvation = 88.502980 kcal Electronic energy + Delta-G solvation = -31496.112051 eV Core-core repulsion = 27095.733381 eV Total energy + Delta-G solvation = -4400.378670 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.58578 -41.40417 -39.37711 -38.28602 -36.70942 -36.35756 -33.87562 -32.99995 -31.51267 -31.29352 -30.82321 -29.45238 -28.73092 -27.18368 -26.27564 -24.35734 -23.99147 -23.56772 -23.18063 -22.46349 -21.30528 -20.10417 -18.38205 -18.34020 -17.95451 -17.74051 -17.00049 -16.80868 -16.64097 -16.19504 -15.44172 -15.09243 -14.92163 -14.85958 -14.57976 -14.30618 -14.16372 -14.01147 -13.77668 -13.69469 -13.46827 -13.40066 -13.29885 -13.01904 -12.81528 -12.16360 -12.05481 -11.86924 -11.65641 -11.38326 -11.23048 -11.13104 -11.00825 -10.91290 -10.73943 -10.28177 -10.08928 -9.86112 -9.32937 -9.24833 -8.68507 -8.58875 -8.46871 -8.23884 -7.65469 -6.21286 -4.27842 0.65235 0.77560 1.30393 1.93381 2.28650 2.85904 2.98574 3.04174 3.08896 3.21298 3.26780 3.29838 3.34741 4.03558 4.19415 4.22200 4.31475 4.39783 4.46305 4.52225 4.62783 4.70167 4.74310 4.76942 4.95093 5.03883 5.11718 5.13153 5.14365 5.16091 5.45319 5.53098 5.60201 5.64163 5.68689 5.72454 5.77791 5.88171 6.00863 6.11469 6.34181 6.66802 6.68557 6.89430 7.03365 7.10545 7.22533 7.48990 7.71964 7.90241 7.92230 8.22634 8.71887 8.82426 9.37064 10.86859 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.001826 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.064446 B =15330.863548 C =15665.827302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.199 3.801 3 H 0.105 0.895 4 N -0.703 5.703 5 C 0.512 3.488 6 N -0.617 5.617 7 C 0.367 3.633 8 N -0.554 5.554 9 C 0.363 3.637 10 C -0.337 4.337 11 C 0.068 3.932 12 N -0.243 5.243 13 N -0.332 5.332 14 C 0.264 3.736 15 C -0.534 4.534 16 H 0.061 0.939 17 C 0.067 3.933 18 N -0.891 5.891 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.078 4.078 24 C -0.104 4.104 25 C -0.094 4.094 26 C 0.029 3.971 27 C 0.035 3.965 28 C -0.086 4.086 29 O -0.309 6.309 30 C 0.213 3.787 31 O -0.310 6.310 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.408 0.592 36 H 0.195 0.805 37 H 0.182 0.818 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.268 0.732 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.085 0.915 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 -2.218 -29.698 29.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.094 3.906 3 H 0.123 0.877 4 N -0.337 5.337 5 C 0.260 3.740 6 N -0.348 5.348 7 C 0.073 3.927 8 N -0.278 5.278 9 C 0.115 3.885 10 C -0.354 4.354 11 C -0.127 4.127 12 N -0.059 5.059 13 N -0.118 5.118 14 C 0.147 3.853 15 C -0.572 4.572 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.529 5.529 19 Si 0.734 3.266 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.200 1.200 23 C -0.079 4.079 24 C -0.122 4.122 25 C -0.113 4.113 26 C -0.016 4.016 27 C -0.010 4.010 28 C -0.106 4.106 29 O -0.225 6.225 30 C 0.101 3.899 31 O -0.226 6.226 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.245 0.755 36 H 0.211 0.789 37 H 0.199 0.801 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.102 0.898 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.874 -1.868 -28.549 28.624 hybrid contribution -0.605 -0.879 -0.254 1.097 sum -1.479 -2.747 -28.804 28.972 Atomic orbital electron populations 1.22188 0.93939 1.02449 1.03042 1.19682 0.94222 0.96724 0.79993 0.87692 1.44463 1.70541 1.12264 1.06409 1.17855 0.84387 0.88037 0.83759 1.67931 1.30239 1.06464 1.30121 1.24412 0.88122 0.99131 0.81065 1.67517 1.20609 1.09296 1.30408 1.18941 0.92632 0.89281 0.87600 1.19602 1.21825 0.97638 0.96378 1.23358 1.00038 0.95417 0.93915 1.76944 1.19095 1.01526 1.08293 1.49461 1.48972 1.02912 1.10463 1.19794 0.98261 0.97737 0.69513 1.21202 0.97086 1.45963 0.92974 0.92105 1.24895 0.96904 0.94490 0.97388 1.69906 1.26906 1.43962 1.12117 0.86404 0.82559 0.78839 0.78788 1.20040 1.20900 1.19955 1.19725 0.99329 0.93608 0.95259 1.20720 1.00108 0.93662 0.97724 1.20054 1.01217 1.00447 0.89539 1.19838 1.02426 0.91972 0.87322 1.19723 1.02343 0.91190 0.87697 1.19859 1.00889 1.00779 0.89028 1.87380 1.69489 1.36372 1.29233 1.25648 0.94551 0.70769 0.98902 1.87375 1.71078 1.35336 1.28827 0.90932 0.91564 0.92439 0.75480 0.78864 0.80141 0.92824 0.92251 0.92211 0.84403 0.84434 0.84246 0.89751 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.47 37.16 0.35 -0.95 16 2 C 0.20 1.71 2.80 -69.08 -0.19 1.52 16 3 H 0.11 1.00 7.44 -51.93 -0.39 0.62 16 4 N -0.70 -7.15 5.15 -54.72 -0.28 -7.43 16 5 C 0.51 7.42 7.53 -154.84 -1.17 6.26 16 6 N -0.62 -9.18 9.35 -13.62 -0.13 -9.31 16 7 C 0.37 5.91 12.24 -92.12 -1.13 4.78 16 8 N -0.55 -11.42 10.47 -13.97 -0.15 -11.57 16 9 C 0.36 7.86 8.04 -156.23 -1.26 6.61 16 10 C -0.34 -5.90 6.14 -106.82 -0.66 -6.55 16 11 C 0.07 1.11 11.87 -17.11 -0.20 0.91 16 12 N -0.24 -5.11 12.45 30.80 0.38 -4.73 16 13 N -0.33 -7.85 3.63 -61.64 -0.22 -8.07 16 14 C 0.26 7.00 6.19 -5.19 -0.03 6.97 16 15 C -0.53 -15.16 9.39 -34.44 -0.32 -15.49 16 16 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 17 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 18 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 19 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.08 -0.61 4.96 -104.62 -0.52 -1.13 16 24 C -0.10 -0.71 9.05 -39.57 -0.36 -1.07 16 25 C -0.09 -0.70 10.06 -39.47 -0.40 -1.10 16 26 C 0.03 0.26 7.15 -39.09 -0.28 -0.02 16 27 C 0.03 0.32 7.15 -39.09 -0.28 0.04 16 28 C -0.09 -0.72 9.68 -39.47 -0.38 -1.10 16 29 O -0.31 -2.78 11.40 -45.69 -0.52 -3.30 16 30 C 0.21 1.30 8.89 101.05 0.90 2.20 16 31 O -0.31 -2.73 11.40 -45.70 -0.52 -3.25 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.41 3.32 6.71 -40.82 -0.27 3.05 16 36 H 0.19 2.34 8.06 -52.48 -0.42 1.92 16 37 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.14 0.68 6.89 -52.49 -0.36 0.32 16 42 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.14 0.98 8.03 -52.48 -0.42 0.56 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -34.52 390.43 -11.07 -45.60 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.22 Total: 0.88 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -6.02 Total: 3.66 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: 0.34 Total: -66.07 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -1.04 Total: -6.55 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.52 -11.07 -45.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.099 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds