Wall clock time and date at job start Tue Mar 31 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47155 * 2 1 4 4 N 1.46501 * 109.47539 * 120.00068 * 2 1 3 5 5 C 1.38114 * 119.99729 * 275.00135 * 4 2 1 6 6 N 1.32866 * 120.81370 * 0.45826 * 5 4 2 7 7 C 1.32116 * 121.19302 * 180.02562 * 6 5 4 8 8 N 1.31512 * 122.64649 * 359.74702 * 7 6 5 9 9 C 1.33196 * 120.68405 * 359.97438 * 8 7 6 10 10 C 1.40812 * 120.80804 * 179.97438 * 5 4 2 11 11 C 1.41167 * 134.70431 * 0.28782 * 10 5 4 12 12 N 1.30249 * 108.47084 * 179.70675 * 11 10 5 13 13 N 1.36310 * 134.61808 * 179.97438 * 9 8 7 14 14 C 1.46505 * 125.87239 * 359.96128 * 13 9 8 15 15 C 1.50702 * 109.46673 * 90.00164 * 14 13 9 16 16 H 1.08004 * 120.00358 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99651 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00171 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99687 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47272 * 60.00357 * 19 17 15 21 21 H 1.48508 * 109.46879 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47124 * 299.99785 * 19 17 15 23 23 C 1.50699 * 109.47145 * 240.00279 * 2 1 3 24 24 C 1.38260 * 119.92410 * 279.72618 * 23 2 1 25 25 C 1.38241 * 120.14022 * 179.68997 * 24 23 2 26 26 C 1.38547 * 120.02656 * 0.58965 * 25 24 23 27 27 C 1.39258 * 119.83194 * 359.68826 * 26 25 24 28 28 C 1.38230 * 119.93493 * 99.99685 * 23 2 1 29 29 O 1.36501 * 108.64370 * 179.97438 * 27 26 25 30 30 C 1.43990 * 105.48009 * 342.71735 * 29 27 26 31 31 O 1.36504 * 131.52749 * 179.68233 * 26 25 24 32 32 H 1.09000 * 109.46758 * 299.99983 * 1 2 3 33 33 H 1.08993 * 109.47267 * 59.99817 * 1 2 3 34 34 H 1.09003 * 109.46843 * 180.02562 * 1 2 3 35 35 H 0.96997 * 120.00469 * 94.99811 * 4 2 1 36 36 H 1.08003 * 118.67772 * 179.76382 * 7 6 5 37 37 H 1.08002 * 125.76335 * 359.71895 * 11 10 5 38 38 H 1.09001 * 109.47242 * 209.99993 * 14 13 9 39 39 H 1.09004 * 109.46964 * 330.00486 * 14 13 9 40 40 H 0.97008 * 120.00112 * 180.02562 * 18 17 15 41 41 H 1.08000 * 119.92863 * 359.97438 * 24 23 2 42 42 H 1.08001 * 119.98268 * 180.27461 * 25 24 23 43 43 H 1.08004 * 119.97827 * 0.02562 * 28 23 2 44 44 H 1.08991 * 110.57785 * 268.55566 * 30 29 27 45 45 H 1.09003 * 110.56508 * 145.68132 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 2.1504 -0.0016 2.3858 6 7 1.8304 1.2855 2.4660 7 6 1.9541 1.9520 3.6000 8 7 2.3905 1.3929 4.7075 9 6 2.7316 0.1056 4.7304 10 6 2.6176 -0.6485 3.5460 11 6 3.0389 -1.9612 3.8496 12 7 3.3799 -2.0050 5.1059 13 7 3.2041 -0.7428 5.6870 14 6 3.4813 -0.3941 7.0827 15 6 2.2437 -0.6208 7.9123 16 1 1.3412 -0.9882 7.4466 17 6 2.2638 -0.3590 9.2658 18 7 3.3626 0.0889 9.8328 19 14 0.7296 -0.6393 10.2941 20 1 0.3320 -2.0677 10.2108 21 1 1.0106 -0.2860 11.7089 22 1 -0.3731 0.2123 9.7803 23 6 2.0324 -0.7103 -1.2305 24 6 2.0714 -2.0920 -1.2616 25 6 2.5254 -2.7484 -2.3904 26 6 2.9540 -2.0219 -3.4895 27 6 2.9201 -0.6301 -3.4560 28 6 2.4583 0.0209 -2.3235 29 8 3.3894 -0.1534 -4.6459 30 6 4.0920 -1.2550 -5.2510 31 8 3.4442 -2.4173 -4.7006 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 2.2492 -1.6317 1.1526 36 1 1.6859 2.9980 3.6183 37 1 3.0728 -2.7893 3.1570 38 1 4.2908 -1.0192 7.4595 39 1 3.7729 0.6544 7.1441 40 1 3.3768 0.2727 10.7852 41 1 1.7422 -2.6599 -0.4039 42 1 2.5506 -3.8278 -2.4136 43 1 2.4312 1.1002 -2.2945 44 1 5.1458 -1.2361 -4.9735 45 1 3.9798 -1.2316 -6.3350 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065520157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:16 Heat of formation + Delta-G solvation = 67.469661 kcal Electronic energy + Delta-G solvation = -31497.024124 eV Core-core repulsion = 27095.733381 eV Total energy + Delta-G solvation = -4401.290743 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.14782 -42.78825 -40.24654 -39.44246 -37.33483 -37.26618 -35.73993 -34.30978 -33.05851 -32.50139 -31.53136 -30.32406 -29.70193 -29.04070 -26.78835 -25.58331 -25.31069 -24.71733 -24.04438 -23.67815 -22.15016 -21.47520 -19.50957 -19.00923 -18.85116 -18.79260 -18.40670 -18.01393 -17.81299 -17.12354 -16.68349 -16.61021 -16.07866 -15.67393 -15.47036 -15.23129 -15.05854 -15.05486 -14.88390 -14.86021 -14.54659 -14.33942 -14.04519 -13.98796 -13.68518 -13.65918 -13.54472 -13.03753 -12.76632 -12.73116 -12.55232 -12.38316 -12.31625 -12.27880 -11.84171 -11.82988 -11.67911 -11.45559 -10.74357 -10.60797 -10.02825 -9.87404 -9.74436 -9.07456 -8.97795 -8.33725 -6.50692 -0.00297 0.04961 0.19965 0.56567 1.34220 1.38718 1.41520 1.50192 1.67406 1.73361 2.04078 2.33076 2.51221 2.56678 2.95950 3.05199 3.30031 3.43753 3.46619 3.56893 3.71015 3.78520 3.82806 4.02425 4.08211 4.12916 4.16903 4.28765 4.39215 4.44761 4.48189 4.57052 4.80867 4.87157 4.89198 4.97148 5.04298 5.06625 5.17305 5.20719 5.33958 5.37282 5.48800 5.50877 5.59902 5.78179 5.80024 5.99729 6.10091 6.15523 6.54451 6.60745 6.81451 7.18636 7.49237 8.73564 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.001826 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.064446 B =15330.863548 C =15665.827302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.203 3.797 3 H 0.099 0.901 4 N -0.678 5.678 5 C 0.523 3.477 6 N -0.610 5.610 7 C 0.376 3.624 8 N -0.606 5.606 9 C 0.336 3.664 10 C -0.344 4.344 11 C 0.100 3.900 12 N -0.291 5.291 13 N -0.367 5.367 14 C 0.285 3.715 15 C -0.551 4.551 16 H 0.046 0.954 17 C 0.019 3.981 18 N -0.920 5.920 19 Si 0.975 3.025 20 H -0.268 1.268 21 H -0.270 1.270 22 H -0.271 1.271 23 C -0.079 4.079 24 C -0.097 4.097 25 C -0.096 4.096 26 C 0.014 3.986 27 C 0.016 3.984 28 C -0.092 4.092 29 O -0.327 6.327 30 C 0.205 3.795 31 O -0.325 6.325 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.421 0.579 36 H 0.229 0.771 37 H 0.241 0.759 38 H 0.030 0.970 39 H 0.032 0.968 40 H 0.274 0.726 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.146 0.854 44 H 0.100 0.900 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.653 -3.267 -32.086 32.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.098 3.902 3 H 0.117 0.883 4 N -0.312 5.312 5 C 0.269 3.731 6 N -0.341 5.341 7 C 0.084 3.916 8 N -0.333 5.333 9 C 0.089 3.911 10 C -0.361 4.361 11 C -0.094 4.094 12 N -0.106 5.106 13 N -0.153 5.153 14 C 0.166 3.834 15 C -0.589 4.589 16 H 0.065 0.935 17 C -0.182 4.182 18 N -0.558 5.558 19 Si 0.798 3.202 20 H -0.193 1.193 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.080 4.080 24 C -0.116 4.116 25 C -0.115 4.115 26 C -0.031 4.031 27 C -0.029 4.029 28 C -0.111 4.111 29 O -0.243 6.243 30 C 0.094 3.906 31 O -0.242 6.242 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.261 0.739 36 H 0.245 0.755 37 H 0.257 0.743 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.180 0.820 42 H 0.174 0.826 43 H 0.164 0.836 44 H 0.118 0.882 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.335 -2.947 -31.026 31.253 hybrid contribution -0.149 -0.515 0.160 0.560 sum -2.485 -3.462 -30.866 31.159 Atomic orbital electron populations 1.22142 0.93165 1.03037 1.02828 1.19716 0.94638 0.96391 0.79410 0.88298 1.44552 1.68486 1.12786 1.05365 1.17920 0.83077 0.87862 0.84269 1.68093 1.30266 1.06525 1.29218 1.25163 0.85816 1.00399 0.80272 1.67526 1.23347 1.09669 1.32753 1.19371 0.92964 0.90194 0.88547 1.19725 1.22608 0.97756 0.96056 1.24291 0.95871 0.96336 0.92949 1.76893 1.22360 1.00830 1.10514 1.49077 1.51782 1.04616 1.09856 1.19101 0.96892 0.95477 0.71935 1.21357 0.97204 1.46495 0.93868 0.93524 1.25804 1.00177 0.93827 0.98410 1.70008 1.28815 1.44292 1.12661 0.85362 0.78457 0.78931 0.77442 1.19342 1.19462 1.19598 1.19581 0.99890 0.93991 0.94562 1.20986 0.99006 0.93313 0.98251 1.20348 1.00529 1.01452 0.89123 1.20167 1.02826 0.92209 0.87868 1.19932 1.03172 0.91613 0.88139 1.20003 1.00717 1.01332 0.89059 1.87342 1.69982 1.37636 1.29373 1.26082 0.94898 0.69352 1.00258 1.87340 1.71428 1.36513 1.28919 0.92735 0.90217 0.91464 0.73883 0.75461 0.74347 0.95191 0.95036 0.91738 0.82003 0.82618 0.83579 0.88198 0.82311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.47 71.98 0.68 -1.37 16 2 C 0.20 2.86 2.80 44.25 0.12 2.98 16 3 H 0.10 1.62 7.44 -2.39 -0.02 1.60 16 4 N -0.68 -11.39 5.15 -327.04 -1.68 -13.07 16 5 C 0.52 13.94 7.53 133.64 1.01 14.95 16 6 N -0.61 -17.03 9.35 -197.01 -1.84 -18.87 16 7 C 0.38 11.84 12.24 180.87 2.21 14.05 16 8 N -0.61 -25.59 10.47 -198.10 -2.07 -27.67 16 9 C 0.34 14.90 8.04 134.15 1.08 15.97 16 10 C -0.34 -11.61 6.14 -21.29 -0.13 -11.74 16 11 C 0.10 3.10 11.87 85.65 1.02 4.12 16 12 N -0.29 -12.41 12.45 -56.46 -0.70 -13.12 16 13 N -0.37 -18.16 3.63 -348.92 -1.27 -19.43 16 14 C 0.28 16.17 6.19 85.63 0.53 16.70 16 15 C -0.55 -32.72 9.39 25.60 0.24 -32.48 16 16 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 17 C 0.02 1.06 5.46 84.66 0.46 1.53 16 18 N -0.92 -54.65 13.29 21.45 0.28 -54.37 16 19 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 C -0.08 -1.00 4.96 -19.86 -0.10 -1.10 16 24 C -0.10 -0.98 9.05 22.28 0.20 -0.78 16 25 C -0.10 -1.16 10.06 22.34 0.22 -0.93 16 26 C 0.01 0.22 7.15 22.59 0.16 0.38 16 27 C 0.02 0.27 7.15 22.59 0.16 0.43 16 28 C -0.09 -1.35 9.68 22.34 0.22 -1.13 16 29 O -0.33 -5.53 11.40 -76.07 -0.87 -6.40 16 30 C 0.20 2.18 8.89 113.37 1.01 3.19 16 31 O -0.33 -5.25 11.40 -76.09 -0.87 -6.12 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.42 4.89 6.71 -92.71 -0.62 4.26 16 36 H 0.23 5.17 8.06 -2.91 -0.02 5.14 16 37 H 0.24 4.08 8.06 -2.91 -0.02 4.06 16 38 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.03 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 41 H 0.16 0.79 6.89 -2.91 -0.02 0.77 16 42 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.15 1.82 8.03 -2.91 -0.02 1.80 16 44 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.16 0.64 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -80.24 390.43 2.54 -77.70 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.44 Total: 9.66 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: 9.10 Total: 24.77 kcal Atomic # 7 Polarization: -139.23 SS G_CDS: -7.28 Total: -146.52 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -1.74 Total: -12.52 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -80.24 2.54 -77.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.167 kcal (2) G-P(sol) polarization free energy of solvation -80.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds