Wall clock time and date at job start Tue Mar 31 2020 05:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40056 * 125.87809 * 90.02329 * 10 9 7 12 12 C 1.30250 * 109.69972 * 179.97438 * 11 10 9 13 13 C 1.41166 * 108.46900 * 359.97438 * 12 11 10 14 14 C 1.36323 * 125.87070 * 269.71454 * 10 9 7 15 15 N 1.33189 * 134.62115 * 0.03466 * 14 10 9 16 16 C 1.31498 * 120.69184 * 180.02562 * 15 14 10 17 17 N 1.32138 * 122.64192 * 0.02562 * 16 15 14 18 18 C 1.32863 * 121.18743 * 359.63110 * 17 16 15 19 19 N 1.38105 * 120.80419 * 179.91504 * 18 17 16 20 20 C 1.46957 * 111.00047 * 124.46858 * 19 18 17 21 21 C 1.53055 * 109.36611 * 176.80713 * 20 19 18 22 22 N 1.46956 * 109.36210 * 58.40180 * 21 20 19 23 23 C 1.39001 * 111.00109 * 176.80837 * 22 21 20 24 24 C 1.39332 * 120.09711 * 303.80388 * 23 22 21 25 25 N 1.31920 * 119.89264 * 179.97438 * 24 23 22 26 26 C 1.32276 * 120.08454 * 359.97438 * 25 24 23 27 27 C 1.38151 * 120.19282 * 359.97438 * 26 25 24 28 28 N 1.32250 * 120.11191 * 359.78666 * 27 26 25 29 29 C 1.46957 * 110.88031 * 300.67986 * 22 21 20 30 30 C 1.46952 * 111.00645 * 0.66478 * 19 18 17 31 31 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 33 33 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 34 34 H 1.08007 * 125.76411 * 180.02562 * 12 11 10 35 35 H 1.08000 * 118.68710 * 180.02562 * 16 15 14 36 36 H 1.09004 * 109.49250 * 296.77432 * 20 19 18 37 37 H 1.09003 * 109.49328 * 56.83942 * 20 19 18 38 38 H 1.08993 * 109.49138 * 298.43031 * 21 20 19 39 39 H 1.09003 * 109.50687 * 178.37437 * 21 20 19 40 40 H 1.08003 * 120.05711 * 359.94844 * 24 23 22 41 41 H 1.08004 * 119.89751 * 179.97438 * 26 25 24 42 42 H 1.07998 * 119.94353 * 180.02562 * 27 26 25 43 43 H 1.09003 * 109.48528 * 299.35349 * 29 22 21 44 44 H 1.08999 * 109.48666 * 179.29319 * 29 22 21 45 45 H 1.09001 * 109.49111 * 303.16094 * 30 19 18 46 46 H 1.09006 * 109.48477 * 63.20119 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7358 -4.2419 1.1219 12 6 3.5484 -5.1914 0.7548 13 6 3.5848 -5.2282 -0.6559 14 6 2.7178 -4.2185 -1.1176 15 7 2.5704 -4.0493 -2.4304 16 6 3.2194 -4.8121 -3.2825 17 7 4.0400 -5.7734 -2.8969 18 6 4.2587 -6.0158 -1.6090 19 7 5.1166 -7.0237 -1.2148 20 6 6.1680 -6.5041 -0.3293 21 6 7.0479 -7.6620 0.1478 22 7 7.6324 -8.3416 -1.0168 23 6 8.4959 -9.3560 -0.6200 24 6 9.5663 -9.0716 0.2254 25 7 10.3830 -10.0376 0.5999 26 6 10.1864 -11.2744 0.1742 27 6 9.1256 -11.5606 -0.6633 28 7 8.2993 -10.5990 -1.0397 29 6 6.5810 -8.8613 -1.9023 30 6 5.7011 -7.7034 -2.3792 31 1 -0.4850 0.8401 -0.0004 32 1 0.6242 -2.5609 0.8844 33 1 0.6244 -2.5529 -0.8956 34 1 4.1003 -5.8413 1.4178 35 1 3.0762 -4.6464 -4.3400 36 1 6.7787 -5.7837 -0.8735 37 1 5.7104 -6.0165 0.5316 38 1 6.4427 -8.3688 0.7154 39 1 7.8460 -7.2755 0.7817 40 1 9.7274 -8.0620 0.5734 41 1 10.8571 -12.0629 0.4823 42 1 8.9686 -12.5719 -1.0081 43 1 5.9704 -9.5817 -1.3579 44 1 7.0387 -9.3488 -2.7630 45 1 4.9031 -8.0902 -3.0130 46 1 6.3061 -6.9965 -2.9470 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065533165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:24 Heat of formation + Delta-G solvation = 206.992540 kcal Electronic energy + Delta-G solvation = -31975.091705 eV Core-core repulsion = 27709.862541 eV Total energy + Delta-G solvation = -4265.229164 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.88825 -41.56632 -39.76916 -38.38299 -36.51540 -34.43444 -33.84493 -32.66111 -31.88477 -31.35514 -30.93463 -29.75812 -27.43147 -27.07153 -25.54660 -24.27851 -23.85758 -23.23928 -23.05128 -22.37948 -20.61108 -20.11203 -18.23304 -17.98189 -17.59335 -17.38946 -17.07426 -16.73909 -16.37151 -15.80208 -15.48184 -15.17538 -15.02755 -14.84874 -14.77300 -14.52872 -14.30364 -14.05140 -13.80742 -13.50331 -13.28910 -12.98972 -12.63789 -12.22345 -12.06622 -11.78936 -11.76609 -11.69727 -11.59354 -11.41969 -11.25741 -11.08874 -10.97293 -10.80799 -10.45349 -10.33828 -10.25276 -9.88040 -9.52549 -9.38191 -8.88277 -8.70851 -8.64466 -8.42932 -7.95133 -6.26813 -4.33902 0.37945 0.73035 0.95174 1.68540 2.82540 2.84283 2.89736 3.22837 3.23086 3.26447 3.30623 3.31635 3.80587 3.89566 4.09734 4.13595 4.23073 4.27932 4.40398 4.57032 4.62806 4.66402 4.69744 4.83916 4.85587 4.88944 5.01887 5.08470 5.08721 5.10306 5.14364 5.27994 5.40073 5.46155 5.55168 5.61531 5.76559 5.81390 6.01010 6.19719 6.32729 6.47541 6.54707 6.93030 6.95638 6.96459 7.02006 7.21791 7.38800 7.57730 7.74086 7.84545 8.07226 8.56277 8.69167 9.31329 10.81368 Molecular weight = 366.16amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.001994 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.236982 B =14041.277014 C =14664.743667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.330 5.330 11 N -0.233 5.233 12 C 0.067 3.933 13 C -0.297 4.297 14 C 0.352 3.648 15 N -0.532 5.532 16 C 0.350 3.650 17 N -0.595 5.595 18 C 0.431 3.569 19 N -0.473 5.473 20 C 0.059 3.941 21 C 0.060 3.940 22 N -0.473 5.473 23 C 0.270 3.730 24 C 0.041 3.959 25 N -0.419 5.419 26 C 0.010 3.990 27 C 0.081 3.919 28 N -0.477 5.477 29 C 0.065 3.935 30 C 0.066 3.934 31 H 0.269 0.731 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.188 0.812 35 H 0.198 0.802 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.170 0.830 41 H 0.168 0.832 42 H 0.170 0.830 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.349 -22.296 -1.978 28.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.146 3.854 10 N -0.117 5.117 11 N -0.048 5.048 12 C -0.128 4.128 13 C -0.313 4.313 14 C 0.103 3.897 15 N -0.254 5.254 16 C 0.056 3.944 17 N -0.320 5.320 18 C 0.182 3.818 19 N -0.191 5.191 20 C -0.068 4.068 21 C -0.066 4.066 22 N -0.191 5.191 23 C 0.035 3.965 24 C -0.124 4.124 25 N -0.133 5.133 26 C -0.149 4.149 27 C -0.079 4.079 28 N -0.197 5.197 29 C -0.062 4.062 30 C -0.061 4.061 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.204 0.796 35 H 0.214 0.786 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.188 0.812 41 H 0.185 0.815 42 H 0.187 0.813 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.119 0.881 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.259 -21.127 -1.812 26.720 hybrid contribution 0.791 0.338 -0.013 0.860 sum 17.049 -20.789 -1.825 26.948 Atomic orbital electron populations 1.69907 1.06010 1.27831 1.48999 1.24902 0.95001 0.99388 0.94360 0.86392 0.79447 0.81811 0.78883 1.19965 1.20847 1.19967 1.21181 0.93478 0.89602 1.53182 0.92089 1.19838 0.85649 0.79758 1.00132 1.49533 1.35842 1.27623 0.98658 1.76981 1.10808 1.07534 1.09514 1.23533 0.99193 0.97731 0.92329 1.19667 1.10161 1.05960 0.95519 1.19029 0.91642 0.90460 0.88554 1.67518 1.27737 1.30018 1.00081 1.24532 0.85859 0.84627 0.99337 1.68318 1.24445 1.23591 1.15648 1.19308 0.89706 0.85025 0.87803 1.58807 1.18030 1.23405 1.18816 1.22456 0.90866 0.95879 0.97571 1.22446 0.97790 0.96058 0.90265 1.59310 1.19207 1.23425 1.17121 1.20882 0.94580 0.88620 0.92444 1.23327 0.91732 1.00122 0.97244 1.68375 1.25197 1.00533 1.19155 1.23571 0.98786 0.94929 0.97620 1.23605 0.91046 0.99160 0.94090 1.68413 1.27925 0.99407 1.23963 1.22234 0.90798 0.96114 0.97011 1.22197 0.97864 0.95354 0.90711 0.92137 0.92648 0.92206 0.79557 0.78589 0.91727 0.87752 0.91804 0.88325 0.81247 0.81464 0.81336 0.91904 0.88604 0.88119 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.54 -14.95 9.39 -34.44 -0.32 -15.28 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.26 6.85 6.19 -5.20 -0.03 6.82 16 10 N -0.33 -7.64 3.63 -61.65 -0.22 -7.87 16 11 N -0.23 -4.79 12.45 30.80 0.38 -4.40 16 12 C 0.07 1.09 10.74 -17.11 -0.18 0.91 16 13 C -0.30 -5.18 5.75 -106.82 -0.61 -5.79 16 14 C 0.35 7.49 8.04 -156.23 -1.26 6.23 16 15 N -0.53 -10.81 10.47 -13.97 -0.15 -10.96 16 16 C 0.35 5.63 12.24 -92.11 -1.13 4.50 16 17 N -0.60 -9.03 8.87 -13.62 -0.12 -9.15 16 18 C 0.43 6.46 6.43 -154.85 -1.00 5.46 16 19 N -0.47 -5.44 4.73 -172.65 -0.82 -6.26 16 20 C 0.06 0.55 5.35 -3.76 -0.02 0.53 16 21 C 0.06 0.44 5.37 -3.77 -0.02 0.42 16 22 N -0.47 -4.03 4.74 -172.91 -0.82 -4.85 16 23 C 0.27 2.36 6.40 -154.73 -0.99 1.37 16 24 C 0.04 0.33 10.37 -17.11 -0.18 0.16 16 25 N -0.42 -3.61 10.49 -12.88 -0.14 -3.75 16 26 C 0.01 0.06 11.21 -17.39 -0.19 -0.13 16 27 C 0.08 0.52 11.21 -17.40 -0.20 0.32 16 28 N -0.48 -4.21 8.89 -12.24 -0.11 -4.31 16 29 C 0.07 0.58 4.79 -3.77 -0.02 0.56 16 30 C 0.07 0.67 4.80 -3.77 -0.02 0.65 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.19 2.12 6.85 -52.48 -0.36 1.76 16 35 H 0.20 2.35 8.06 -52.49 -0.42 1.93 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.94 5.08 -51.93 -0.26 0.68 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.52 6.81 -51.93 -0.35 0.17 16 40 H 0.17 1.04 7.19 -52.48 -0.38 0.66 16 41 H 0.17 0.55 8.06 -52.48 -0.42 0.13 16 42 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 44 H 0.10 0.84 7.84 -51.93 -0.41 0.43 16 45 H 0.10 1.06 7.84 -51.93 -0.41 0.65 16 46 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -33.61 382.76 -12.28 -45.89 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.51 Total: -0.28 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -6.26 Total: 8.48 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -1.25 Total: -76.17 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.61 -12.28 -45.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065533165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.881 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 219.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 206.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds