Wall clock time and date at job start Tue Mar 31 2020 05:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 110.65799 * 2 1 4 4 C 1.38242 * 119.99653 * 271.18836 * 3 2 1 5 5 C 1.38233 * 119.99766 * 179.78475 * 4 3 2 6 6 C 1.38241 * 119.99908 * 0.46226 * 5 4 3 7 7 C 1.38238 * 119.99985 * 359.76807 * 6 5 4 8 8 C 1.38230 * 120.00248 * 91.45442 * 3 2 1 9 9 N 1.47316 * 110.60048 * 122.91189 * 2 1 3 10 10 C 1.34526 * 106.61917 * 118.30163 * 9 2 1 11 11 O 1.21535 * 123.77311 * 180.22658 * 10 9 2 12 12 N 1.33794 * 112.45848 * 0.22654 * 10 9 2 13 13 C 1.46494 * 124.17825 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47270 * 90.02605 * 13 12 10 15 15 C 1.38299 * 119.92870 * 269.72656 * 14 13 12 16 16 C 1.38100 * 120.06800 * 179.72427 * 15 14 13 17 17 C 1.38875 * 119.93379 * 0.54619 * 16 15 14 18 18 O 1.35744 * 120.07545 * 179.74771 * 17 16 15 19 19 C 1.34826 * 117.00323 * 174.43974 * 18 17 16 20 20 H 1.07997 * 120.00127 * 5.05969 * 19 18 17 21 21 C 1.38660 * 120.00146 * 185.05488 * 19 18 17 22 22 N 1.31561 * 119.99864 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99823 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46998 * 89.99860 * 23 21 19 25 25 H 1.48506 * 109.46923 * 209.99431 * 23 21 19 26 26 H 1.48501 * 109.47470 * 329.99870 * 23 21 19 27 27 C 1.38882 * 119.85980 * 359.72791 * 17 16 15 28 28 C 1.38107 * 119.93150 * 359.97438 * 27 17 16 29 29 C 1.34766 * 111.64233 * 359.97438 * 12 10 9 30 30 O 1.21242 * 127.15381 * 180.02562 * 29 12 10 31 31 H 1.08996 * 109.47092 * 297.78783 * 1 2 3 32 32 H 1.08994 * 109.47059 * 57.78763 * 1 2 3 33 33 H 1.09001 * 109.46801 * 177.79203 * 1 2 3 34 34 H 1.08005 * 119.99721 * 359.97438 * 4 3 2 35 35 H 1.08000 * 120.00009 * 180.25674 * 5 4 3 36 36 H 1.07996 * 119.99880 * 179.79496 * 6 5 4 37 37 H 1.07997 * 120.00084 * 180.02562 * 7 6 5 38 38 H 1.08000 * 119.99939 * 359.97438 * 8 3 2 39 39 H 0.96994 * 126.68977 * 298.56097 * 9 2 1 40 40 H 1.09004 * 109.47315 * 210.02457 * 13 12 10 41 41 H 1.09001 * 109.47477 * 330.02677 * 13 12 10 42 42 H 1.07997 * 119.96941 * 0.02562 * 15 14 13 43 43 H 1.08010 * 120.03521 * 180.27571 * 16 15 14 44 44 H 0.96997 * 119.99810 * 180.02562 * 22 21 19 45 45 H 1.07998 * 120.03989 * 179.97438 * 27 17 16 46 46 H 1.07999 * 119.96933 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0617 1.4102 0.0000 4 6 2.2823 2.0656 -1.1970 5 6 2.7657 3.3606 -1.1969 6 6 3.0376 3.9969 -0.0001 7 6 2.8215 3.3397 1.1967 8 6 2.3340 2.0462 1.1967 9 7 2.0483 -0.7493 1.1576 10 6 2.7558 -1.7809 0.6628 11 8 3.3202 -2.6063 1.3537 12 7 2.7687 -1.7969 -0.6750 13 6 3.4619 -2.8061 -1.4794 14 6 2.5276 -3.9554 -1.7574 15 6 2.4747 -5.0280 -0.8860 16 6 1.6154 -6.0801 -1.1350 17 6 0.8122 -6.0656 -2.2679 18 8 -0.0296 -7.1006 -2.5181 19 6 -0.8629 -6.9713 -3.5702 20 1 -0.7848 -6.1110 -4.2183 21 6 -1.8200 -7.9430 -3.8200 22 7 -2.6327 -7.8170 -4.8469 23 14 -1.9555 -9.4307 -2.6986 24 1 -2.9035 -9.1338 -1.5948 25 1 -2.4511 -10.5940 -3.4774 26 1 -0.6196 -9.7470 -2.1322 27 6 0.8718 -4.9897 -3.1440 28 6 1.7287 -3.9377 -2.8862 29 6 2.0652 -0.7698 -1.1911 30 8 1.8927 -0.5166 -2.3642 31 1 -0.3633 0.4791 0.9091 32 1 -0.3633 0.5478 -0.8694 33 1 -0.3633 -1.0269 -0.0396 34 1 2.0740 1.5669 -2.1321 35 1 2.9342 3.8742 -2.1320 36 1 3.4185 5.0074 -0.0002 37 1 3.0336 3.8368 2.1317 38 1 2.1653 1.5327 2.1317 39 1 1.9042 -0.5416 2.0941 40 1 3.7824 -2.3622 -2.4219 41 1 4.3329 -3.1697 -0.9342 42 1 3.1024 -5.0406 -0.0073 43 1 1.5713 -6.9154 -0.4518 44 1 -3.3025 -8.4965 -5.0215 45 1 0.2488 -4.9756 -4.0261 46 1 1.7752 -3.1005 -3.5670 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065548353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:31 Heat of formation + Delta-G solvation = -7.037871 kcal Electronic energy + Delta-G solvation = -32397.013890 eV Core-core repulsion = 28025.625417 eV Total energy + Delta-G solvation = -4371.388472 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.78864 -39.64086 -39.19045 -38.62065 -37.09603 -36.44320 -35.10306 -32.49860 -32.06798 -31.31020 -30.43429 -30.21097 -29.73087 -26.69702 -25.27685 -24.63476 -23.32950 -23.08398 -22.15032 -21.58831 -20.82392 -20.05521 -18.35442 -17.92775 -17.57299 -17.33260 -16.72273 -16.50535 -15.88661 -15.65067 -15.41342 -14.90435 -14.82296 -14.73138 -14.37236 -14.28484 -14.08957 -13.89292 -13.80312 -13.65858 -13.34645 -12.88797 -12.82688 -12.78117 -12.65566 -12.55888 -12.26179 -11.87429 -11.71117 -11.55951 -11.47997 -11.31724 -10.94358 -10.75672 -10.68637 -10.24541 -10.20054 -9.82483 -9.64926 -9.43207 -9.31264 -9.20196 -8.92190 -8.30486 -7.44142 -6.46901 -4.13485 0.83729 1.00805 1.50403 1.77936 2.10770 2.41952 2.89409 2.95990 3.19243 3.22962 3.37572 3.39178 3.68751 3.97403 4.19588 4.43569 4.46781 4.53908 4.64451 4.77230 4.79352 4.86523 5.05308 5.07762 5.14324 5.22303 5.22570 5.24895 5.41046 5.45312 5.50770 5.64352 5.67981 5.70293 5.74140 5.79388 6.04296 6.09774 6.10240 6.13809 6.27955 6.51341 6.55094 6.58692 6.74682 6.94897 6.97780 7.19106 7.24318 7.26676 7.55588 7.75053 7.98007 8.02266 8.87811 9.49163 10.60317 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.017570 B = 0.002237 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.273756 B =12516.204352 C =13008.222367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.164 3.836 3 C -0.092 4.092 4 C -0.107 4.107 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.098 4.098 9 N -0.722 5.722 10 C 0.706 3.294 11 O -0.538 6.538 12 N -0.566 5.566 13 C 0.175 3.825 14 C -0.216 4.216 15 C -0.048 4.048 16 C -0.197 4.197 17 C 0.169 3.831 18 O -0.213 6.213 19 C -0.391 4.391 20 H 0.108 0.892 21 C 0.064 3.936 22 N -0.876 5.876 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.226 4.226 28 C -0.048 4.048 29 C 0.536 3.464 30 O -0.459 6.459 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.142 0.858 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.436 0.564 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.280 0.720 45 H 0.134 0.866 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.264 22.961 11.614 27.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.073 3.927 3 C -0.093 4.093 4 C -0.125 4.125 5 C -0.134 4.134 6 C -0.132 4.132 7 C -0.138 4.138 8 C -0.116 4.116 9 N -0.387 5.387 10 C 0.407 3.593 11 O -0.411 6.411 12 N -0.311 5.311 13 C 0.056 3.944 14 C -0.218 4.218 15 C -0.066 4.066 16 C -0.217 4.217 17 C 0.116 3.884 18 O -0.117 6.117 19 C -0.466 4.466 20 H 0.125 0.875 21 C -0.140 4.140 22 N -0.513 5.513 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.245 4.245 28 C -0.067 4.067 29 C 0.322 3.678 30 O -0.328 6.328 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.160 0.840 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.281 0.719 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.152 0.848 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.316 22.221 11.227 26.949 hybrid contribution -0.401 -0.487 0.694 0.937 sum 9.915 21.735 11.920 26.698 Atomic orbital electron populations 1.22008 0.89176 1.04446 1.04523 1.20154 0.97158 0.90077 0.85276 1.19422 1.01973 0.93344 0.94572 1.21434 0.97571 0.95144 0.98379 1.21188 0.99053 0.94711 0.98402 1.21265 0.99279 1.00018 0.92601 1.21121 0.99705 0.94662 0.98356 1.20827 0.98859 0.94966 0.96980 1.45646 1.55598 1.28802 1.08657 1.15868 0.79513 0.81950 0.81934 1.90997 1.48372 1.40814 1.60877 1.46669 1.49258 1.27523 1.07623 1.20434 0.93486 0.85613 0.94886 1.19372 1.05334 0.97556 0.99514 1.20615 0.96412 0.92271 0.97341 1.20214 1.01758 1.01333 0.98367 1.19194 0.89754 0.86887 0.92568 1.83571 1.44508 1.36251 1.47395 1.20795 1.11511 1.10720 1.03570 0.87501 1.24488 0.94205 0.98626 0.96645 1.69647 1.18918 1.35648 1.27106 0.86179 0.79656 0.80877 0.80199 1.19837 1.20685 1.18303 1.21258 1.04530 0.95819 1.02902 1.20745 0.93574 0.96927 0.95448 1.20509 0.77273 0.80413 0.89565 1.90748 1.56396 1.69265 1.16385 0.90195 0.89564 0.90515 0.84035 0.85539 0.85840 0.85697 0.86047 0.71917 0.88652 0.88449 0.86308 0.86373 0.90948 0.84802 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.97 37.16 0.33 -0.90 16 2 C 0.16 1.60 1.17 -133.24 -0.16 1.45 16 3 C -0.09 -0.82 4.88 -104.62 -0.51 -1.33 16 4 C -0.11 -0.99 9.18 -39.58 -0.36 -1.36 16 5 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 6 C -0.11 -0.76 10.05 -39.58 -0.40 -1.15 16 7 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 8 C -0.10 -0.71 9.35 -39.59 -0.37 -1.08 16 9 N -0.72 -6.92 5.29 -54.02 -0.29 -7.21 16 10 C 0.71 9.39 8.62 -88.02 -0.76 8.63 16 11 O -0.54 -8.62 17.48 5.33 0.09 -8.53 16 12 N -0.57 -7.57 2.59 -122.02 -0.32 -7.89 16 13 C 0.17 2.39 5.82 -5.20 -0.03 2.36 16 14 C -0.22 -3.63 5.47 -104.57 -0.57 -4.20 16 15 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 16 C -0.20 -3.98 9.99 -39.40 -0.39 -4.38 16 17 C 0.17 3.91 6.65 -39.11 -0.26 3.65 16 18 O -0.21 -5.61 8.59 0.08 0.00 -5.61 16 19 C -0.39 -10.95 9.95 30.89 0.31 -10.65 16 20 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 21 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 22 N -0.88 -25.13 13.96 55.48 0.77 -24.36 16 23 Si 0.91 21.59 28.62 -169.99 -4.86 16.72 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 27 C -0.23 -4.89 9.17 -39.39 -0.36 -5.25 16 28 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 29 C 0.54 6.84 6.52 -10.56 -0.07 6.77 16 30 O -0.46 -6.56 15.67 5.59 0.09 -6.48 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.14 1.46 5.77 -52.48 -0.30 1.15 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.12 0.56 8.06 -52.49 -0.42 0.13 16 37 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.12 0.65 6.95 -52.49 -0.36 0.28 16 39 H 0.44 2.98 8.10 -40.82 -0.33 2.65 16 40 H 0.10 1.17 7.95 -51.93 -0.41 0.76 16 41 H 0.10 1.23 7.80 -51.93 -0.41 0.83 16 42 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 43 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 44 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.13 3.05 5.64 -52.49 -0.30 2.75 16 46 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -32.37 392.98 -9.19 -41.55 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.34 Total: 6.57 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -5.26 Total: -10.70 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.17 Total: -39.45 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.18 Total: -20.62 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.86 Total: 16.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.37 -9.19 -41.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065548353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.517 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds