Wall clock time and date at job start Tue Mar 31 2020 06:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47393 * 2 1 4 4 C 1.53002 * 109.47523 * 120.00308 * 2 1 3 5 5 C 1.53005 * 109.46959 * 64.99828 * 4 2 1 6 6 N 1.46500 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.46499 * 120.00134 * 269.99427 * 6 5 4 8 8 C 1.34778 * 119.99903 * 90.00725 * 6 5 4 9 9 O 1.21546 * 120.00104 * 4.28870 * 8 6 5 10 10 C 1.47848 * 119.99913 * 184.29896 * 8 6 5 11 11 C 1.39569 * 120.14531 * 148.10370 * 10 8 6 12 12 C 1.37958 * 119.85318 * 180.02562 * 11 10 8 13 13 C 1.38354 * 120.14533 * 359.97438 * 12 11 10 14 14 S 1.76197 * 119.85410 * 179.97438 * 13 12 11 15 15 O 1.42103 * 104.27808 * 206.07600 * 14 13 12 16 16 O 1.42099 * 104.27879 * 333.92959 * 14 13 12 17 17 C 1.81399 * 104.45137 * 90.00090 * 14 13 12 18 18 C 1.53004 * 109.47203 * 179.97438 * 17 14 13 19 19 C 1.50702 * 109.46912 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99966 * 0.02562 * 19 18 17 21 21 C 1.37870 * 119.99896 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00210 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00110 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46972 * 90.00302 * 23 21 19 25 25 H 1.48499 * 109.47075 * 210.00252 * 23 21 19 26 26 H 1.48501 * 109.46897 * 330.00138 * 23 21 19 27 27 C 1.38359 * 120.29261 * 0.27489 * 13 12 11 28 28 C 1.37964 * 120.14206 * 359.45000 * 27 13 12 29 29 H 1.09003 * 109.47134 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47260 * 299.99272 * 1 2 3 31 31 H 1.08997 * 109.47261 * 59.99701 * 1 2 3 32 32 H 1.09005 * 109.47126 * 240.00104 * 2 1 3 33 33 H 1.08995 * 109.47651 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47161 * 300.00360 * 3 2 1 35 35 H 1.09005 * 109.46900 * 59.99966 * 3 2 1 36 36 H 1.09000 * 109.47088 * 305.00310 * 4 2 1 37 37 H 1.08994 * 109.47521 * 184.99897 * 4 2 1 38 38 H 1.09000 * 109.46827 * 60.00322 * 5 4 2 39 39 H 1.09003 * 109.47042 * 300.00262 * 5 4 2 40 40 H 1.08992 * 109.47557 * 274.48722 * 7 6 5 41 41 H 1.09003 * 109.46469 * 34.49045 * 7 6 5 42 42 H 1.09001 * 109.47054 * 154.48133 * 7 6 5 43 43 H 1.08001 * 120.07485 * 0.02562 * 11 10 8 44 44 H 1.08006 * 119.92728 * 179.97438 * 12 11 10 45 45 H 1.08997 * 109.47101 * 300.00226 * 17 14 13 46 46 H 1.08996 * 109.46888 * 60.00150 * 17 14 13 47 47 H 1.08997 * 109.47361 * 300.00170 * 18 17 14 48 48 H 1.08996 * 109.46991 * 60.00317 * 18 17 14 49 49 H 0.96996 * 120.00372 * 179.97438 * 22 21 19 50 50 H 1.07998 * 119.92818 * 179.70051 * 27 13 12 51 51 H 1.08003 * 120.06997 * 180.25669 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1956 1.1878 6 7 2.1232 -2.8861 2.3842 7 6 3.4514 -3.5042 2.3828 8 6 1.3500 -2.9529 3.4862 9 8 0.2187 -2.5091 3.4626 10 6 1.8780 -3.5658 4.7237 11 6 1.4573 -3.1011 5.9707 12 6 1.9544 -3.6770 7.1216 13 6 2.8675 -4.7134 7.0415 14 16 3.4978 -5.4429 8.5163 15 8 4.7648 -5.9623 8.1365 16 8 3.3901 -4.4137 9.4901 17 6 2.3414 -6.7911 8.8844 18 6 2.7866 -7.5111 10.1590 19 6 1.8255 -8.6308 10.4652 20 1 0.9818 -8.8111 9.8154 21 6 2.0238 -9.4255 11.5741 22 7 3.0514 -9.2063 12.3651 23 14 0.8329 -10.8139 11.9533 24 1 1.2947 -12.0581 11.2868 25 1 0.7763 -11.0305 13.4213 26 1 -0.5190 -10.4569 11.4531 27 6 3.2926 -5.1753 5.8085 28 6 2.7990 -4.6119 4.6499 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2619 2.1370 37 1 3.1263 -0.6444 1.2951 38 1 2.0699 -2.6550 0.3001 39 1 0.5489 -2.2725 1.1419 40 1 3.3839 -4.5096 1.9673 41 1 4.1302 -2.9050 1.7759 42 1 3.8284 -3.5576 3.4042 43 1 0.7443 -2.2925 6.0346 44 1 1.6299 -3.3181 8.0872 45 1 1.3411 -6.3828 9.0278 46 1 2.3301 -7.4970 8.0540 47 1 3.7868 -7.9195 10.0152 48 1 2.7982 -6.8055 10.9897 49 1 3.1907 -9.7652 13.1455 50 1 4.0092 -5.9813 5.7529 51 1 3.1285 -4.9761 3.6880 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065563250.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:42 Heat of formation + Delta-G solvation = -83.294684 kcal Electronic energy + Delta-G solvation = -30325.521100 eV Core-core repulsion = 26124.384268 eV Total energy + Delta-G solvation = -4201.136832 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.90028 -38.76833 -37.31169 -36.67134 -35.74092 -35.50263 -33.94258 -32.20546 -31.39082 -31.21014 -29.74439 -27.59331 -27.39676 -25.70604 -25.08581 -23.27090 -22.89530 -21.57949 -20.50694 -20.07203 -18.80771 -17.86232 -17.60086 -16.88744 -16.49220 -16.11825 -15.78551 -15.53169 -15.35346 -15.05365 -14.85084 -14.64443 -14.52426 -14.22757 -14.08706 -13.91534 -13.48790 -13.44556 -13.22229 -13.11933 -12.96684 -12.65556 -12.55437 -12.42518 -12.21109 -11.80763 -11.74796 -11.64372 -11.58430 -11.40191 -11.32650 -11.13502 -11.10483 -11.00410 -10.99018 -10.80984 -10.44418 -10.41969 -10.24105 -9.77184 -9.53567 -9.27876 -9.16897 -9.10037 -8.52740 -6.15136 -4.21043 0.18002 0.56249 1.04693 2.30458 2.49319 3.24163 3.25181 3.31815 3.33946 3.35650 4.00350 4.24427 4.28391 4.35310 4.36760 4.39718 4.46634 4.54027 4.66290 4.70752 4.75148 4.87488 5.00297 5.06032 5.13373 5.17032 5.18167 5.20519 5.23394 5.24219 5.32619 5.37216 5.46388 5.53420 5.57189 5.59497 5.64467 5.69956 5.74415 5.76055 5.87386 5.89618 5.93268 5.96525 6.07770 6.40365 6.51045 6.85213 7.25936 7.31248 7.70670 7.77824 8.13016 8.82362 9.44077 10.95704 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.021126 B = 0.001702 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.086944 B =16444.234188 C =16882.938261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.131 4.131 5 C 0.112 3.888 6 N -0.611 5.611 7 C 0.054 3.946 8 C 0.558 3.442 9 O -0.527 6.527 10 C -0.091 4.091 11 C -0.085 4.085 12 C -0.030 4.030 13 C -0.633 4.633 14 S 2.472 3.528 15 O -0.943 6.943 16 O -0.943 6.943 17 C -0.562 4.562 18 C 0.026 3.974 19 C -0.522 4.522 20 H 0.063 0.937 21 C 0.059 3.941 22 N -0.889 5.889 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.033 4.033 28 C -0.127 4.127 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.140 0.860 44 H 0.150 0.850 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.265 0.735 50 H 0.150 0.850 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.395 16.033 -25.977 30.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.170 4.170 5 C -0.010 4.010 6 N -0.343 5.343 7 C -0.088 4.088 8 C 0.346 3.654 9 O -0.404 6.404 10 C -0.094 4.094 11 C -0.105 4.105 12 C -0.048 4.048 13 C -0.716 4.716 14 S 2.654 3.346 15 O -0.941 6.941 16 O -0.940 6.940 17 C -0.696 4.696 18 C -0.013 4.013 19 C -0.561 4.561 20 H 0.081 0.919 21 C -0.144 4.144 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.051 4.051 28 C -0.146 4.146 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.158 0.842 44 H 0.168 0.832 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.075 0.925 50 H 0.167 0.833 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.158 16.545 -25.467 30.370 hybrid contribution -1.162 -0.880 -0.387 1.508 sum -1.321 15.665 -25.854 30.258 Atomic orbital electron populations 1.21906 0.94935 1.02079 1.01877 1.21047 0.96184 0.96290 0.97686 1.21831 1.00873 0.95840 1.01910 1.22024 1.01104 0.95040 0.98795 1.21634 1.01415 0.91841 0.86099 1.47735 1.17508 1.55664 1.13427 1.22562 0.83565 0.98067 1.04619 1.18418 0.85091 0.78808 0.83054 1.90792 1.18105 1.47676 1.83790 1.20118 0.97916 0.97699 0.93680 1.21311 0.98615 0.99878 0.90680 1.21021 0.91985 0.92110 0.99717 1.31330 1.10732 1.09973 1.19583 1.06485 0.77285 0.77174 0.73698 1.93526 1.37463 1.80750 1.82319 1.93532 1.87119 1.55494 1.57858 1.30192 1.14206 1.14292 1.10903 1.19044 0.98372 0.96062 0.87822 1.20990 1.10823 1.14117 1.10199 0.91914 1.25053 0.95635 0.97742 0.95935 1.69950 1.28370 1.39369 1.15026 0.86464 0.81144 0.82031 0.77616 1.20456 1.20991 1.19743 1.21000 0.96159 0.97400 0.90563 1.21980 0.96394 0.96269 0.99949 0.92385 0.92453 0.92758 0.91149 0.92733 0.92594 0.92617 0.91371 0.91745 0.90349 0.89211 0.91649 0.90930 0.88706 0.84214 0.83196 0.85660 0.85697 0.94531 0.94520 0.92484 0.83250 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.95 37.15 0.33 -0.59 16 2 C -0.09 -0.52 2.92 -90.62 -0.26 -0.78 16 3 C -0.15 -0.78 9.19 37.16 0.34 -0.44 16 4 C -0.13 -0.87 5.01 -26.73 -0.13 -1.00 16 5 C 0.11 0.79 5.22 -4.04 -0.02 0.77 16 6 N -0.61 -5.10 2.87 -182.69 -0.52 -5.63 16 7 C 0.05 0.30 8.80 59.85 0.53 0.82 16 8 C 0.56 6.44 7.44 -12.33 -0.09 6.35 16 9 O -0.53 -7.68 16.31 5.32 0.09 -7.59 16 10 C -0.09 -1.04 5.47 -104.97 -0.57 -1.62 16 11 C -0.09 -1.03 9.60 -39.19 -0.38 -1.40 16 12 C -0.03 -0.38 9.45 -39.64 -0.37 -0.75 16 13 C -0.63 -8.61 5.66 -39.49 -0.22 -8.83 16 14 S 2.47 41.53 5.16 -107.50 -0.55 40.98 16 15 O -0.94 -17.95 17.10 -57.54 -0.98 -18.93 16 16 O -0.94 -18.30 17.11 -57.54 -0.98 -19.28 16 17 C -0.56 -10.08 5.92 37.16 0.22 -9.86 16 18 C 0.03 0.63 4.98 -27.88 -0.14 0.49 16 19 C -0.52 -14.00 9.11 -34.44 -0.31 -14.31 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 23 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C -0.03 -0.38 9.45 -39.64 -0.37 -0.76 16 28 C -0.13 -1.27 7.44 -39.18 -0.29 -1.56 16 29 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 39 H 0.09 0.77 5.79 -51.93 -0.30 0.47 16 40 H 0.07 0.26 7.44 -51.93 -0.39 -0.12 16 41 H 0.07 0.28 8.11 -51.93 -0.42 -0.14 16 42 H 0.09 0.58 4.72 -51.93 -0.25 0.33 16 43 H 0.14 1.53 7.95 -52.49 -0.42 1.11 16 44 H 0.15 1.75 7.56 -52.48 -0.40 1.35 16 45 H 0.13 2.00 8.14 -51.93 -0.42 1.58 16 46 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 47 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.15 1.53 7.55 -52.49 -0.40 1.13 16 51 H 0.15 1.01 4.80 -52.48 -0.25 0.76 16 LS Contribution 425.08 15.07 6.41 6.41 Total: -1.00 -35.62 425.08 -10.88 -46.51 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -8.19 Total: -1.23 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: -1.86 Total: -31.94 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 0.21 Total: -30.73 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -1.88 Total: -45.80 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 41.53 SS G_CDS: -0.55 Total: 40.98 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -35.62 -10.88 -46.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065563250.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.787 kcal (2) G-P(sol) polarization free energy of solvation -35.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds