Wall clock time and date at job start Tue Mar 31 2020 06:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.50694 * 109.46972 * 180.02562 * 8 6 5 10 10 C 1.38278 * 119.93512 * 269.73048 * 9 8 6 11 11 C 1.38135 * 120.06348 * 179.72923 * 10 9 8 12 12 C 1.38816 * 119.93135 * 0.56600 * 11 10 9 13 13 N 1.40258 * 120.06143 * 179.68262 * 12 11 10 14 14 C 1.35067 * 127.38832 * 359.73080 * 13 12 11 15 15 N 1.30746 * 107.27608 * 179.89598 * 14 13 12 16 16 N 1.28419 * 110.64187 * 0.38471 * 15 14 13 17 17 N 1.28953 * 110.20807 * 359.75580 * 16 15 14 18 18 C 1.38820 * 119.87163 * 359.70741 * 12 11 10 19 19 C 1.38117 * 119.93598 * 359.97438 * 18 12 11 20 20 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 21 21 C 1.46491 * 126.04623 * 179.87688 * 20 4 3 22 22 C 1.50702 * 109.46957 * 269.71277 * 21 20 4 23 23 H 1.08002 * 120.00299 * 0.02562 * 22 21 20 24 24 C 1.37884 * 119.99942 * 179.72213 * 22 21 20 25 25 N 1.31514 * 119.99698 * 0.28408 * 24 22 21 26 26 Si 1.86794 * 119.99837 * 180.27476 * 24 22 21 27 27 H 1.48496 * 109.47341 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.46983 * 120.00379 * 26 24 22 29 29 H 1.48503 * 109.47491 * 240.00192 * 26 24 22 30 30 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 32 32 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 33 33 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 34 34 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 35 35 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 36 36 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 37 37 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 38 38 H 1.08001 * 119.96873 * 359.97438 * 10 9 8 39 39 H 1.07998 * 120.03027 * 180.29263 * 11 10 9 40 40 H 1.07998 * 126.36231 * 0.02562 * 14 13 12 41 41 H 1.08001 * 120.02679 * 180.02562 * 18 12 11 42 42 H 1.08004 * 119.96666 * 180.02562 * 19 18 12 43 43 H 1.09004 * 109.47166 * 149.71543 * 21 20 4 44 44 H 1.08994 * 109.47507 * 29.71250 * 21 20 4 45 45 H 0.97005 * 119.99651 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 6 5.4153 5.1957 0.0307 10 6 5.2319 5.8644 -1.1657 11 6 4.8387 7.1886 -1.1650 12 6 4.6391 7.8513 0.0383 13 7 4.2463 9.1978 0.0422 14 6 4.0258 9.9908 -1.0287 15 7 3.6760 11.1664 -0.5757 16 7 3.6681 11.1728 0.7084 17 7 4.0036 10.0131 1.1617 18 6 4.8296 7.1789 1.2378 19 6 5.2163 5.8530 1.2308 20 7 3.6093 -0.6405 0.0013 21 6 4.7870 -1.5116 0.0026 22 6 5.1921 -1.8109 -1.4178 23 1 4.6288 -1.3935 -2.2393 24 6 6.2856 -2.6124 -1.6685 25 7 6.9718 -3.1203 -0.6681 26 14 6.7923 -2.9770 -3.4290 27 1 5.8641 -2.2912 -4.3635 28 1 8.1755 -2.4872 -3.6576 29 1 6.7406 -4.4422 -3.6658 30 7 2.2731 -1.0608 0.0005 31 1 -0.3634 0.0003 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3633 -0.8901 -0.5136 34 1 1.9901 2.1596 -0.0009 35 1 5.6359 1.1294 0.0155 36 1 6.4297 3.5415 0.9182 37 1 6.4372 3.5481 -0.8617 38 1 5.3923 5.3498 -2.1015 39 1 4.6910 7.7090 -2.0998 40 1 4.1189 9.7062 -2.0663 41 1 4.6746 7.6919 2.1754 42 1 5.3642 5.3293 2.1637 43 1 4.5494 -2.4431 0.5166 44 1 5.6079 -1.0120 0.5169 45 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065566037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:36 Heat of formation + Delta-G solvation = 192.999287 kcal Electronic energy + Delta-G solvation = -31029.217710 eV Core-core repulsion = 26665.663091 eV Total energy + Delta-G solvation = -4363.554619 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.59334 -41.02930 -40.21541 -39.04180 -35.83203 -34.81605 -33.84023 -32.78888 -32.46092 -32.10687 -31.55652 -29.36727 -28.78723 -27.55497 -26.10904 -24.94032 -24.42846 -23.03483 -22.37065 -22.19529 -21.19420 -19.82382 -19.37193 -19.11441 -17.12171 -17.00673 -16.80732 -16.72004 -16.55731 -16.16770 -15.86919 -15.17438 -15.00061 -14.68381 -14.44166 -14.24804 -14.06341 -13.99028 -13.66560 -13.63358 -12.95488 -12.93248 -12.85413 -12.57912 -12.48627 -12.20328 -12.06052 -11.85888 -11.78131 -11.64550 -11.58093 -11.42842 -11.13457 -10.98397 -10.92239 -10.47654 -10.41923 -10.05127 -9.86702 -9.60793 -9.55910 -8.97390 -8.80375 -7.99649 -7.52722 -6.41293 -4.49868 -0.11486 0.80255 1.16841 1.33275 1.85220 2.13339 2.68280 3.00775 3.08229 3.18025 3.20143 3.23976 3.51851 3.59209 3.73260 3.78796 4.15388 4.17412 4.24785 4.36102 4.43035 4.64206 4.77975 4.81830 4.92186 4.92969 5.01611 5.13893 5.17389 5.29776 5.45073 5.54810 5.61607 5.71830 5.92165 5.97298 6.02421 6.09779 6.10677 6.18297 6.33079 6.34958 6.58403 6.75294 6.96631 7.42810 7.49856 7.54008 7.71676 7.81550 7.97165 8.18434 8.54466 8.63429 9.18026 10.65804 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.012465 B = 0.001953 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.834738 B =14334.950611 C =15625.527683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.050 3.950 3 C -0.294 4.294 4 C 0.300 3.700 5 N -0.639 5.639 6 C 0.520 3.480 7 O -0.508 6.508 8 C -0.103 4.103 9 C -0.048 4.048 10 C -0.078 4.078 11 C -0.116 4.116 12 C 0.121 3.879 13 N -0.321 5.321 14 C 0.225 3.775 15 N -0.332 5.332 16 N -0.038 5.038 17 N -0.077 5.077 18 C -0.097 4.097 19 C -0.081 4.081 20 N -0.344 5.344 21 C 0.256 3.744 22 C -0.540 4.540 23 H 0.065 0.935 24 C 0.066 3.934 25 N -0.889 5.889 26 Si 0.906 3.094 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.279 1.279 30 N -0.284 5.284 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.161 0.839 35 H 0.417 0.583 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.239 0.761 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.262 19.079 0.136 19.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.326 4.326 4 C 0.078 3.922 5 N -0.286 5.286 6 C 0.305 3.695 7 O -0.381 6.381 8 C -0.143 4.143 9 C -0.050 4.050 10 C -0.097 4.097 11 C -0.137 4.137 12 C 0.030 3.970 13 N -0.111 5.111 14 C -0.072 4.072 15 N -0.181 5.181 16 N -0.033 5.033 17 N -0.062 5.062 18 C -0.117 4.117 19 C -0.099 4.099 20 N -0.129 5.129 21 C 0.138 3.862 22 C -0.578 4.578 23 H 0.083 0.917 24 C -0.138 4.138 25 N -0.527 5.527 26 Si 0.733 3.267 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.205 1.205 30 N -0.110 5.110 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.178 0.822 35 H 0.254 0.746 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.255 0.745 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.484 19.022 1.207 19.066 hybrid contribution 1.247 -0.627 -1.580 2.109 sum 0.763 18.394 -0.373 18.414 Atomic orbital electron populations 1.20021 0.87600 1.02454 1.02060 1.22039 0.96527 0.91062 1.01831 1.21260 0.89080 1.00404 1.21895 1.17919 0.87983 0.83355 1.02985 1.42778 1.08360 1.05548 1.71941 1.20366 0.91187 0.81272 0.76631 1.90679 1.26643 1.73649 1.47155 1.20697 0.96444 0.90387 1.06777 1.19470 0.97878 0.94246 0.93370 1.20912 0.97374 0.92941 0.98481 1.20789 1.01893 0.95521 0.95536 1.17581 1.04333 0.78963 0.96170 1.49103 1.45628 1.10515 1.05904 1.27446 0.95967 0.86736 0.97026 1.74496 1.21152 1.19188 1.03236 1.78089 1.10059 1.12101 1.03009 1.82677 1.19165 0.97004 1.07351 1.20905 0.99327 0.94784 0.96733 1.20988 0.97346 0.93209 0.98381 1.49360 1.06547 1.02186 1.54830 1.19630 0.77799 0.89796 0.98962 1.21369 1.13052 1.32083 0.91329 0.91657 1.24946 0.95730 0.94878 0.98197 1.69925 1.19061 1.32709 1.30990 0.86304 0.78320 0.78531 0.83576 1.19567 1.20622 1.20510 1.77371 0.86137 1.21797 1.25678 0.91364 0.91165 0.91478 0.82197 0.74617 0.86835 0.86689 0.84168 0.84661 0.74466 0.84067 0.84343 0.92550 0.93801 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.00 0.38 -0.53 16 2 C 0.05 0.97 7.21 -82.44 -0.59 0.38 16 3 C -0.29 -5.71 9.58 -39.78 -0.38 -6.09 16 4 C 0.30 5.88 7.66 -153.16 -1.17 4.71 16 5 N -0.64 -9.67 5.41 -11.46 -0.06 -9.74 16 6 C 0.52 6.63 7.79 -10.98 -0.09 6.54 16 7 O -0.51 -8.00 13.16 5.55 0.07 -7.93 16 8 C -0.10 -0.78 5.83 -29.03 -0.17 -0.95 16 9 C -0.05 -0.38 4.37 -104.60 -0.46 -0.84 16 10 C -0.08 -0.55 9.69 -39.60 -0.38 -0.93 16 11 C -0.12 -0.73 9.49 -39.41 -0.37 -1.11 16 12 C 0.12 0.99 6.70 -83.57 -0.56 0.43 16 13 N -0.32 -2.92 3.85 -11.74 -0.05 -2.97 16 14 C 0.23 1.63 12.16 -90.15 -1.10 0.54 16 15 N -0.33 -3.53 12.15 29.64 0.36 -3.17 16 16 N -0.04 -0.47 13.39 60.35 0.81 0.34 16 17 N -0.08 -0.89 13.34 60.35 0.80 -0.09 16 18 C -0.10 -0.81 9.70 -39.41 -0.38 -1.19 16 19 C -0.08 -0.63 9.69 -39.61 -0.38 -1.01 16 20 N -0.34 -7.68 3.60 -61.58 -0.22 -7.90 16 21 C 0.26 6.09 6.01 -5.20 -0.03 6.06 16 22 C -0.54 -13.87 9.39 -34.44 -0.32 -14.19 16 23 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 24 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 25 N -0.89 -23.38 13.29 55.43 0.74 -22.64 16 26 Si 0.91 19.82 29.54 -169.99 -5.02 14.80 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 28 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 30 N -0.28 -6.41 12.56 33.65 0.42 -5.99 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.16 3.01 5.83 -52.49 -0.31 2.71 16 35 H 0.42 5.67 7.96 -40.82 -0.32 5.35 16 36 H 0.11 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.11 0.64 8.08 -51.93 -0.42 0.22 16 38 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.14 0.42 6.88 -52.49 -0.36 0.05 16 40 H 0.24 0.42 7.19 -52.49 -0.38 0.04 16 41 H 0.14 1.13 7.77 -52.49 -0.41 0.72 16 42 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 43 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.04 0.99 7.49 -51.93 -0.39 0.61 16 45 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 396.89 15.07 5.98 5.98 Total: -1.00 -34.63 396.89 -7.37 -42.00 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.09 Total: 3.89 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -6.12 Total: -6.59 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 2.80 Total: -52.14 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.07 Total: -7.93 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.63 -7.37 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065566037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.000 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds