Wall clock time and date at job start Tue Mar 31 2020 06:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.50694 * 109.46972 * 180.02562 * 8 6 5 10 10 C 1.38278 * 119.93512 * 269.73048 * 9 8 6 11 11 C 1.38135 * 120.06348 * 179.72923 * 10 9 8 12 12 C 1.38816 * 119.93135 * 0.56600 * 11 10 9 13 13 N 1.40258 * 120.06143 * 179.68262 * 12 11 10 14 14 C 1.35067 * 127.38832 * 359.73080 * 13 12 11 15 15 N 1.30746 * 107.27608 * 179.89598 * 14 13 12 16 16 N 1.28419 * 110.64187 * 0.38471 * 15 14 13 17 17 N 1.28953 * 110.20807 * 359.75580 * 16 15 14 18 18 C 1.38820 * 119.87163 * 359.70741 * 12 11 10 19 19 C 1.38117 * 119.93598 * 359.97438 * 18 12 11 20 20 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 21 21 C 1.46491 * 126.04623 * 179.87688 * 20 4 3 22 22 C 1.50702 * 109.46957 * 269.71277 * 21 20 4 23 23 H 1.08002 * 120.00299 * 0.02562 * 22 21 20 24 24 C 1.37884 * 119.99942 * 179.72213 * 22 21 20 25 25 N 1.31514 * 119.99698 * 0.28408 * 24 22 21 26 26 Si 1.86794 * 119.99837 * 180.27476 * 24 22 21 27 27 H 1.48496 * 109.47341 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.46983 * 120.00379 * 26 24 22 29 29 H 1.48503 * 109.47491 * 240.00192 * 26 24 22 30 30 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 32 32 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 33 33 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 34 34 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 35 35 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 36 36 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 37 37 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 38 38 H 1.08001 * 119.96873 * 359.97438 * 10 9 8 39 39 H 1.07998 * 120.03027 * 180.29263 * 11 10 9 40 40 H 1.07998 * 126.36231 * 0.02562 * 14 13 12 41 41 H 1.08001 * 120.02679 * 180.02562 * 18 12 11 42 42 H 1.08004 * 119.96666 * 180.02562 * 19 18 12 43 43 H 1.09004 * 109.47166 * 149.71543 * 21 20 4 44 44 H 1.08994 * 109.47507 * 29.71250 * 21 20 4 45 45 H 0.97005 * 119.99651 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 6 5.4153 5.1957 0.0307 10 6 5.2319 5.8644 -1.1657 11 6 4.8387 7.1886 -1.1650 12 6 4.6391 7.8513 0.0383 13 7 4.2463 9.1978 0.0422 14 6 4.0258 9.9908 -1.0287 15 7 3.6760 11.1664 -0.5757 16 7 3.6681 11.1728 0.7084 17 7 4.0036 10.0131 1.1617 18 6 4.8296 7.1789 1.2378 19 6 5.2163 5.8530 1.2308 20 7 3.6093 -0.6405 0.0013 21 6 4.7870 -1.5116 0.0026 22 6 5.1921 -1.8109 -1.4178 23 1 4.6288 -1.3935 -2.2393 24 6 6.2856 -2.6124 -1.6685 25 7 6.9718 -3.1203 -0.6681 26 14 6.7923 -2.9770 -3.4290 27 1 5.8641 -2.2912 -4.3635 28 1 8.1755 -2.4872 -3.6576 29 1 6.7406 -4.4422 -3.6658 30 7 2.2731 -1.0608 0.0005 31 1 -0.3634 0.0003 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3633 -0.8901 -0.5136 34 1 1.9901 2.1596 -0.0009 35 1 5.6359 1.1294 0.0155 36 1 6.4297 3.5415 0.9182 37 1 6.4372 3.5481 -0.8617 38 1 5.3923 5.3498 -2.1015 39 1 4.6910 7.7090 -2.0998 40 1 4.1189 9.7062 -2.0663 41 1 4.6746 7.6919 2.1754 42 1 5.3642 5.3293 2.1637 43 1 4.5494 -2.4431 0.5166 44 1 5.6079 -1.0120 0.5169 45 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065566037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:35 Heat of formation + Delta-G solvation = 172.100079 kcal Electronic energy + Delta-G solvation = -31030.123967 eV Core-core repulsion = 26665.663091 eV Total energy + Delta-G solvation = -4364.460877 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.30039 -42.40248 -41.05019 -40.02223 -36.53495 -36.18572 -35.54005 -33.82153 -33.49391 -33.11662 -32.09396 -30.81031 -30.05925 -28.51887 -27.79363 -25.67286 -25.05528 -24.73508 -23.33489 -22.81601 -22.13557 -21.20451 -20.65622 -19.70543 -18.87169 -18.36692 -17.78057 -17.70185 -17.24442 -16.95719 -16.80960 -16.44121 -16.21142 -15.91982 -15.50333 -15.31043 -15.12108 -14.60294 -14.53306 -14.43399 -14.31850 -14.28604 -14.02922 -13.69580 -13.60115 -13.36814 -13.15527 -13.02901 -12.85336 -12.75479 -12.70321 -12.46018 -12.29928 -12.16472 -12.07404 -11.86933 -11.66107 -11.65152 -11.43244 -10.88769 -10.75004 -10.08072 -9.61162 -9.58383 -9.03028 -8.35187 -6.52283 -0.73590 0.28095 0.51288 0.72593 0.84746 1.15723 1.36389 1.39566 1.43904 1.53107 1.68272 2.09675 2.22497 2.36745 2.65862 2.95528 3.03071 3.31485 3.53349 3.73656 3.76105 3.80199 3.85635 3.89022 4.20187 4.26166 4.28802 4.33339 4.49627 4.61529 4.64544 4.66237 4.74372 4.86390 4.88740 4.93424 4.95245 4.97659 5.05995 5.16948 5.22769 5.26181 5.37966 5.48029 5.52888 5.78692 5.80312 5.97608 6.21003 6.33993 6.59780 7.01238 7.08700 7.20089 7.24261 8.71271 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.012465 B = 0.001953 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.834738 B =14334.950611 C =15625.527683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.055 3.945 3 C -0.308 4.308 4 C 0.303 3.697 5 N -0.640 5.640 6 C 0.521 3.479 7 O -0.537 6.537 8 C -0.092 4.092 9 C -0.060 4.060 10 C -0.083 4.083 11 C -0.107 4.107 12 C 0.107 3.893 13 N -0.322 5.322 14 C 0.242 3.758 15 N -0.359 5.359 16 N -0.063 5.063 17 N -0.104 5.104 18 C -0.113 4.113 19 C -0.088 4.088 20 N -0.367 5.367 21 C 0.271 3.729 22 C -0.552 4.552 23 H 0.047 0.953 24 C 0.027 3.973 25 N -0.914 5.914 26 Si 0.969 3.031 27 H -0.275 1.275 28 H -0.263 1.263 29 H -0.280 1.280 30 N -0.335 5.335 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.168 0.832 35 H 0.424 0.576 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.173 0.827 40 H 0.293 0.707 41 H 0.134 0.866 42 H 0.147 0.853 43 H 0.024 0.976 44 H 0.052 0.948 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 19.863 -2.002 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C -0.340 4.340 4 C 0.080 3.920 5 N -0.288 5.288 6 C 0.310 3.690 7 O -0.411 6.411 8 C -0.131 4.131 9 C -0.061 4.061 10 C -0.102 4.102 11 C -0.128 4.128 12 C 0.015 3.985 13 N -0.112 5.112 14 C -0.054 4.054 15 N -0.209 5.209 16 N -0.058 5.058 17 N -0.090 5.090 18 C -0.133 4.133 19 C -0.106 4.106 20 N -0.153 5.153 21 C 0.153 3.847 22 C -0.590 4.590 23 H 0.066 0.934 24 C -0.174 4.174 25 N -0.552 5.552 26 Si 0.793 3.207 27 H -0.200 1.200 28 H -0.188 1.188 29 H -0.206 1.206 30 N -0.160 5.160 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.185 0.815 35 H 0.261 0.739 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.178 0.822 39 H 0.190 0.810 40 H 0.308 0.692 41 H 0.152 0.848 42 H 0.165 0.835 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.391 19.828 -0.915 19.853 hybrid contribution 0.933 -0.835 -0.912 1.549 sum 1.324 18.993 -1.827 19.126 Atomic orbital electron populations 1.20207 0.84250 1.03775 1.03722 1.22866 0.98628 0.90304 0.99174 1.21453 0.89156 1.00629 1.22775 1.18334 0.89750 0.82728 1.01203 1.43058 1.07409 1.06096 1.72234 1.21389 0.92532 0.80430 0.74679 1.90655 1.28472 1.73816 1.48206 1.20780 0.94092 0.88798 1.09429 1.19609 0.98339 0.94355 0.93776 1.21248 0.96705 0.93281 0.98929 1.21173 1.00129 0.95315 0.96154 1.17842 1.05059 0.78627 0.96964 1.49164 1.45445 1.10827 1.05793 1.28439 0.93289 0.85254 0.98413 1.74416 1.22483 1.21189 1.02779 1.78068 1.11005 1.12708 1.04065 1.82616 1.20181 0.97296 1.08887 1.20976 1.00123 0.95278 0.96940 1.21134 0.97335 0.93070 0.99104 1.49162 1.06192 1.03057 1.56871 1.19236 0.78677 0.89005 0.97821 1.21415 1.13315 1.32715 0.91603 0.93437 1.25671 0.95487 0.94354 1.01922 1.69997 1.19425 1.32964 1.32773 0.85347 0.78517 0.78027 0.78808 1.20023 1.18761 1.20564 1.77314 0.86615 1.23677 1.28383 0.89417 0.88926 0.91018 0.81515 0.73850 0.84204 0.83887 0.82199 0.80976 0.69241 0.84843 0.83487 0.95825 0.92983 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.67 10.44 71.23 0.74 -0.92 16 2 C 0.06 2.14 7.21 43.07 0.31 2.45 16 3 C -0.31 -11.86 9.58 22.14 0.21 -11.65 16 4 C 0.30 11.88 7.66 131.32 1.01 12.88 16 5 N -0.64 -18.75 5.41 -308.55 -1.67 -20.42 16 6 C 0.52 12.33 7.79 87.66 0.68 13.01 16 7 O -0.54 -16.15 13.16 -3.07 -0.04 -16.19 16 8 C -0.09 -1.10 5.83 29.10 0.17 -0.93 16 9 C -0.06 -0.78 4.37 -19.85 -0.09 -0.87 16 10 C -0.08 -0.87 9.69 22.25 0.22 -0.65 16 11 C -0.11 -0.98 9.49 22.38 0.21 -0.76 16 12 C 0.11 1.55 6.70 38.07 0.26 1.80 16 13 N -0.32 -5.42 3.85 -191.06 -0.74 -6.15 16 14 C 0.24 2.92 12.16 180.18 2.19 5.11 16 15 N -0.36 -7.33 12.15 -60.13 -0.73 -8.06 16 16 N -0.06 -1.59 13.39 37.02 0.50 -1.10 16 17 N -0.10 -2.45 13.34 37.02 0.49 -1.95 16 18 C -0.11 -1.81 9.70 22.38 0.22 -1.59 16 19 C -0.09 -1.25 9.69 22.25 0.22 -1.03 16 20 N -0.37 -16.78 3.60 -348.73 -1.26 -18.04 16 21 C 0.27 13.30 6.01 85.64 0.51 13.82 16 22 C -0.55 -28.78 9.39 25.60 0.24 -28.54 16 23 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 24 C 0.03 1.39 5.46 84.66 0.46 1.85 16 25 N -0.91 -47.96 13.29 21.45 0.28 -47.68 16 26 Si 0.97 40.08 29.54 68.60 2.03 42.11 16 27 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 28 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 29 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 30 N -0.33 -15.42 12.56 -47.45 -0.60 -16.02 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.17 6.16 5.83 -2.91 -0.02 6.14 16 35 H 0.42 11.08 7.96 -92.70 -0.74 10.34 16 36 H 0.14 1.00 8.08 -2.39 -0.02 0.98 16 37 H 0.14 0.99 8.08 -2.39 -0.02 0.97 16 38 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 39 H 0.17 0.16 6.88 -2.91 -0.02 0.14 16 40 H 0.29 -0.36 7.19 -2.91 -0.02 -0.38 16 41 H 0.13 2.24 7.77 -2.91 -0.02 2.22 16 42 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.02 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.05 2.41 7.49 -2.39 -0.02 2.39 16 45 H 0.27 13.42 8.31 -92.70 -0.77 12.65 16 Total: -1.00 -78.75 396.89 6.16 -72.59 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.33 Total: 16.92 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 7.56 Total: 3.98 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -3.72 Total: -119.42 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.04 Total: -16.19 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -78.75 6.16 -72.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065566037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.693 kcal (2) G-P(sol) polarization free energy of solvation -78.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds