Wall clock time and date at job start Tue Mar 31 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40056 * 125.87809 * 90.02329 * 10 9 7 12 12 C 1.30250 * 109.69972 * 179.97438 * 11 10 9 13 13 C 1.41166 * 108.46900 * 359.97438 * 12 11 10 14 14 C 1.36323 * 125.87070 * 269.71454 * 10 9 7 15 15 N 1.33189 * 134.62115 * 0.03466 * 14 10 9 16 16 C 1.31498 * 120.69184 * 180.02562 * 15 14 10 17 17 N 1.32138 * 122.64192 * 0.02562 * 16 15 14 18 18 C 1.32863 * 121.18743 * 359.63110 * 17 16 15 19 19 N 1.38105 * 120.80419 * 179.91504 * 18 17 16 20 20 C 1.46906 * 110.99917 * 124.97203 * 19 18 17 21 21 C 1.53239 * 109.34004 * 172.74291 * 20 19 18 22 22 N 1.47084 * 108.51945 * 53.82822 * 21 20 19 23 23 S 1.65606 * 120.88060 * 128.79685 * 22 21 20 24 24 N 1.65603 * 107.21489 * 270.01814 * 23 22 21 25 25 O 1.42100 * 106.40436 * 23.55723 * 23 22 21 26 26 O 1.42103 * 106.40222 * 156.48222 * 23 22 21 27 27 C 1.47079 * 118.23929 * 308.81162 * 22 21 20 28 28 C 1.46899 * 111.00500 * 0.66665 * 19 18 17 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.08007 * 125.76411 * 180.02562 * 12 11 10 33 33 H 1.08000 * 118.68710 * 180.02562 * 16 15 14 34 34 H 1.09001 * 109.49240 * 292.69780 * 20 19 18 35 35 H 1.08993 * 109.49313 * 52.77910 * 20 19 18 36 36 H 1.09001 * 109.63031 * 294.12204 * 21 20 19 37 37 H 1.08999 * 109.63046 * 173.53075 * 21 20 19 38 38 H 0.96998 * 120.00055 * 0.02562 * 24 23 22 39 39 H 0.96998 * 120.00145 * 179.97438 * 24 23 22 40 40 H 1.08994 * 109.63087 * 291.47862 * 27 22 21 41 41 H 1.09007 * 109.62921 * 170.89700 * 27 22 21 42 42 H 1.09000 * 109.48942 * 307.21619 * 28 19 18 43 43 H 1.09001 * 109.49297 * 67.26777 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7358 -4.2419 1.1219 12 6 3.5484 -5.1914 0.7548 13 6 3.5848 -5.2282 -0.6559 14 6 2.7178 -4.2185 -1.1176 15 7 2.5704 -4.0493 -2.4304 16 6 3.2194 -4.8121 -3.2825 17 7 4.0400 -5.7734 -2.8969 18 6 4.2587 -6.0158 -1.6090 19 7 5.1166 -7.0237 -1.2148 20 6 6.1606 -6.5065 -0.3201 21 6 6.9778 -7.6773 0.2365 22 7 7.4688 -8.4826 -0.8921 23 16 9.0709 -8.8825 -1.0174 24 7 9.8104 -7.6789 -1.8818 25 8 9.6047 -8.8179 0.2979 26 8 9.1310 -10.0508 -1.8242 27 6 6.4992 -8.9230 -1.9066 28 6 5.7009 -7.7031 -2.3788 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 4.1003 -5.8413 1.4178 33 1 3.0762 -4.6464 -4.3400 34 1 6.8168 -5.8367 -0.8758 35 1 5.6975 -5.9624 0.5030 36 1 6.3465 -8.2923 0.8778 37 1 7.8232 -7.2947 0.8084 38 1 9.2924 -6.9247 -2.2039 39 1 10.7616 -7.7278 -2.0653 40 1 5.8219 -9.6576 -1.4713 41 1 7.0282 -9.3639 -2.7516 42 1 4.9043 -8.0268 -3.0487 43 1 6.3631 -7.0165 -2.9062 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065575206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:47 Heat of formation + Delta-G solvation = 66.806756 kcal Electronic energy + Delta-G solvation = -31167.243032 eV Core-core repulsion = 26797.827151 eV Total energy + Delta-G solvation = -4369.415881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.78985 -39.74519 -38.28017 -37.57494 -36.20883 -35.61739 -33.83112 -33.55617 -32.40032 -32.01887 -31.24185 -30.02658 -27.44900 -26.97799 -24.77151 -23.57803 -23.42338 -22.59738 -21.35333 -20.36799 -19.65013 -18.78907 -17.89740 -17.74142 -17.48086 -16.78433 -16.68801 -16.43004 -16.12847 -15.62537 -15.24805 -15.06390 -15.02357 -14.71305 -14.41133 -14.27926 -13.91084 -13.55988 -13.07613 -12.97321 -12.86336 -12.54317 -12.45732 -12.34778 -12.23013 -11.89420 -11.82793 -11.66134 -11.42730 -11.29966 -11.11016 -11.03294 -10.88509 -10.85289 -10.37114 -10.29507 -9.95411 -9.76587 -9.36101 -8.94035 -8.67695 -8.47769 -7.99389 -6.29849 -4.37009 0.14584 0.90340 1.63047 2.40228 2.79732 2.84344 3.10787 3.18721 3.20054 3.24745 3.29225 4.03813 4.07967 4.09719 4.23490 4.25934 4.54015 4.57433 4.71465 4.73175 4.77585 4.82876 4.97272 5.01543 5.05729 5.18695 5.29780 5.34337 5.43896 5.50492 5.57040 5.64969 5.67254 5.97227 6.14081 6.25822 6.49898 6.60463 6.90010 6.92775 6.98255 7.16860 7.53690 7.70380 7.81378 8.03344 8.51226 8.66068 9.28452 10.78432 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.002262 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.339599 B =12374.266778 C =12788.339058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.330 5.330 11 N -0.232 5.232 12 C 0.067 3.933 13 C -0.297 4.297 14 C 0.352 3.648 15 N -0.532 5.532 16 C 0.350 3.650 17 N -0.597 5.597 18 C 0.430 3.570 19 N -0.466 5.466 20 C 0.040 3.960 21 C 0.124 3.876 22 N -1.005 6.005 23 S 2.797 3.203 24 N -1.264 6.264 25 O -0.980 6.980 26 O -0.980 6.980 27 C 0.121 3.879 28 C 0.051 3.949 29 H 0.269 0.731 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.189 0.811 33 H 0.197 0.803 34 H 0.055 0.945 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.414 0.586 39 H 0.419 0.581 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.105 -17.006 -4.863 23.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.146 3.854 10 N -0.116 5.116 11 N -0.048 5.048 12 C -0.128 4.128 13 C -0.314 4.314 14 C 0.103 3.897 15 N -0.253 5.253 16 C 0.056 3.944 17 N -0.322 5.322 18 C 0.180 3.820 19 N -0.183 5.183 20 C -0.088 4.088 21 C -0.001 4.001 22 N -0.847 5.847 23 S 2.802 3.198 24 N -0.938 5.938 25 O -0.963 6.963 26 O -0.963 6.963 27 C -0.004 4.004 28 C -0.077 4.077 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.206 0.794 33 H 0.214 0.786 34 H 0.074 0.926 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.241 0.759 39 H 0.248 0.752 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.163 -17.199 -3.941 23.265 hybrid contribution 1.070 1.662 -0.686 2.093 sum 16.234 -15.537 -4.627 22.942 Atomic orbital electron populations 1.69915 1.06028 1.27760 1.49016 1.24903 0.94994 0.99409 0.94340 0.86330 0.79658 0.82137 0.78379 1.20277 1.20767 1.19755 1.21214 0.93499 0.89592 1.53156 0.92050 1.19846 0.85648 0.79758 1.00152 1.49554 1.35788 1.27600 0.98678 1.76996 1.10767 1.07531 1.09476 1.23566 0.99169 0.97727 0.92324 1.19669 1.10191 1.05963 0.95548 1.19032 0.91650 0.90472 0.88538 1.67517 1.27673 1.30044 1.00106 1.24520 0.85895 0.84644 0.99325 1.68306 1.24665 1.23648 1.15604 1.19355 0.89767 0.85062 0.87825 1.58464 1.18176 1.23410 1.18284 1.22823 0.92069 0.96596 0.97295 1.21662 0.99297 0.91724 0.87422 1.57927 1.24998 1.68091 1.33715 1.01629 0.71589 0.73064 0.73545 1.53548 1.21559 1.42136 1.76590 1.93642 1.77385 1.86578 1.38680 1.93638 1.85503 1.46724 1.70440 1.21732 0.91429 0.96489 0.90759 1.22461 0.99160 0.95179 0.90930 0.92162 0.92618 0.92214 0.79391 0.78618 0.92625 0.87543 0.89085 0.87879 0.75879 0.75191 0.89542 0.88148 0.87568 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.74 9.39 -34.44 -0.32 -15.07 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.26 6.73 6.19 -5.20 -0.03 6.69 16 10 N -0.33 -7.46 3.63 -61.65 -0.22 -7.69 16 11 N -0.23 -4.65 12.45 30.80 0.38 -4.27 16 12 C 0.07 1.05 10.67 -17.11 -0.18 0.86 16 13 C -0.30 -4.94 5.73 -106.82 -0.61 -5.55 16 14 C 0.35 7.23 8.04 -156.23 -1.26 5.98 16 15 N -0.53 -10.41 10.47 -13.97 -0.15 -10.55 16 16 C 0.35 5.29 12.24 -92.11 -1.13 4.16 16 17 N -0.60 -8.30 8.82 -13.62 -0.12 -8.42 16 18 C 0.43 5.92 6.43 -154.85 -1.00 4.92 16 19 N -0.47 -4.65 4.65 -172.51 -0.80 -5.45 16 20 C 0.04 0.32 5.40 -3.70 -0.02 0.30 16 21 C 0.12 0.79 6.53 -3.60 -0.02 0.77 16 22 N -1.01 -6.62 3.39 -113.23 -0.38 -7.00 16 23 S 2.80 21.40 6.70 -107.50 -0.72 20.68 16 24 N -1.26 -5.75 9.58 60.35 0.58 -5.17 16 25 O -0.98 -10.66 16.92 -57.17 -0.97 -11.63 16 26 O -0.98 -10.54 16.92 -57.17 -0.97 -11.51 16 27 C 0.12 0.78 6.53 -3.60 -0.02 0.75 16 28 C 0.05 0.40 4.85 -3.70 -0.02 0.39 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.06 1.61 8.14 -51.93 -0.42 1.18 16 32 H 0.19 2.00 6.90 -52.48 -0.36 1.64 16 33 H 0.20 2.18 8.06 -52.49 -0.42 1.75 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.11 0.87 4.94 -51.93 -0.26 0.61 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.56 7.22 -51.93 -0.37 0.19 16 38 H 0.41 1.25 8.96 -34.47 -0.31 0.94 16 39 H 0.42 1.37 8.96 -34.47 -0.31 1.06 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.55 7.22 -51.92 -0.37 0.17 16 42 H 0.11 0.90 7.66 -51.93 -0.40 0.50 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -36.49 370.02 -11.68 -48.16 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -4.89 Total: -0.35 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -4.71 Total: 5.94 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: 0.02 Total: -72.89 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -1.93 Total: -23.14 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 21.40 SS G_CDS: -0.72 Total: 20.68 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.49 -11.68 -48.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065575206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.970 kcal (2) G-P(sol) polarization free energy of solvation -36.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds