Wall clock time and date at job start Tue Mar 31 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40056 * 125.87809 * 90.02329 * 10 9 7 12 12 C 1.30250 * 109.69972 * 179.97438 * 11 10 9 13 13 C 1.41166 * 108.46900 * 359.97438 * 12 11 10 14 14 C 1.36323 * 125.87070 * 269.71454 * 10 9 7 15 15 N 1.33189 * 134.62115 * 0.03466 * 14 10 9 16 16 C 1.31498 * 120.69184 * 180.02562 * 15 14 10 17 17 N 1.32138 * 122.64192 * 0.02562 * 16 15 14 18 18 C 1.32863 * 121.18743 * 359.63110 * 17 16 15 19 19 N 1.38105 * 120.80419 * 179.91504 * 18 17 16 20 20 C 1.46906 * 110.99917 * 124.97203 * 19 18 17 21 21 C 1.53239 * 109.34004 * 172.74291 * 20 19 18 22 22 N 1.47084 * 108.51945 * 53.82822 * 21 20 19 23 23 S 1.65606 * 120.88060 * 128.79685 * 22 21 20 24 24 N 1.65603 * 107.21489 * 270.01814 * 23 22 21 25 25 O 1.42100 * 106.40436 * 23.55723 * 23 22 21 26 26 O 1.42103 * 106.40222 * 156.48222 * 23 22 21 27 27 C 1.47079 * 118.23929 * 308.81162 * 22 21 20 28 28 C 1.46899 * 111.00500 * 0.66665 * 19 18 17 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.08007 * 125.76411 * 180.02562 * 12 11 10 33 33 H 1.08000 * 118.68710 * 180.02562 * 16 15 14 34 34 H 1.09001 * 109.49240 * 292.69780 * 20 19 18 35 35 H 1.08993 * 109.49313 * 52.77910 * 20 19 18 36 36 H 1.09001 * 109.63031 * 294.12204 * 21 20 19 37 37 H 1.08999 * 109.63046 * 173.53075 * 21 20 19 38 38 H 0.96998 * 120.00055 * 0.02562 * 24 23 22 39 39 H 0.96998 * 120.00145 * 179.97438 * 24 23 22 40 40 H 1.08994 * 109.63087 * 291.47862 * 27 22 21 41 41 H 1.09007 * 109.62921 * 170.89700 * 27 22 21 42 42 H 1.09000 * 109.48942 * 307.21619 * 28 19 18 43 43 H 1.09001 * 109.49297 * 67.26777 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7358 -4.2419 1.1219 12 6 3.5484 -5.1914 0.7548 13 6 3.5848 -5.2282 -0.6559 14 6 2.7178 -4.2185 -1.1176 15 7 2.5704 -4.0493 -2.4304 16 6 3.2194 -4.8121 -3.2825 17 7 4.0400 -5.7734 -2.8969 18 6 4.2587 -6.0158 -1.6090 19 7 5.1166 -7.0237 -1.2148 20 6 6.1606 -6.5065 -0.3201 21 6 6.9778 -7.6773 0.2365 22 7 7.4688 -8.4826 -0.8921 23 16 9.0709 -8.8825 -1.0174 24 7 9.8104 -7.6789 -1.8818 25 8 9.6047 -8.8179 0.2979 26 8 9.1310 -10.0508 -1.8242 27 6 6.4992 -8.9230 -1.9066 28 6 5.7009 -7.7031 -2.3788 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 4.1003 -5.8413 1.4178 33 1 3.0762 -4.6464 -4.3400 34 1 6.8168 -5.8367 -0.8758 35 1 5.6975 -5.9624 0.5030 36 1 6.3465 -8.2923 0.8778 37 1 7.8232 -7.2947 0.8084 38 1 9.2924 -6.9247 -2.2039 39 1 10.7616 -7.7278 -2.0653 40 1 5.8219 -9.6576 -1.4713 41 1 7.0282 -9.3639 -2.7516 42 1 4.9043 -8.0268 -3.0487 43 1 6.3631 -7.0165 -2.9062 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065575206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:46 Heat of formation + Delta-G solvation = 36.940522 kcal Electronic energy + Delta-G solvation = -31168.538129 eV Core-core repulsion = 26797.827151 eV Total energy + Delta-G solvation = -4370.710978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.06541 -40.69850 -39.41208 -38.29109 -36.93186 -36.50345 -35.69533 -33.98801 -33.77101 -33.21762 -32.22619 -31.22397 -29.21983 -27.85551 -25.89834 -25.10808 -24.45761 -23.81340 -22.12448 -21.62680 -20.27143 -19.48304 -19.14495 -18.77301 -18.56280 -18.39413 -17.69888 -17.11981 -16.88464 -16.75502 -16.62382 -16.16031 -15.78961 -15.64795 -15.51401 -15.34595 -15.00861 -14.92777 -14.55179 -13.92127 -13.77764 -13.62985 -13.54866 -13.20634 -13.20358 -13.05794 -13.01010 -12.77344 -12.59039 -12.48110 -12.37498 -12.29482 -12.24440 -11.99312 -11.77286 -11.60778 -11.31362 -10.76912 -10.71887 -10.21561 -10.20650 -9.81449 -9.33166 -8.36764 -6.53646 -0.45082 -0.28599 0.31720 1.30025 1.36238 1.36782 1.48748 1.54439 1.85226 2.21318 2.31084 2.60924 2.84004 2.93525 3.13390 3.28896 3.48071 3.49495 3.61121 3.70344 3.97161 4.00166 4.13495 4.14369 4.26160 4.31368 4.42645 4.61215 4.79692 4.80458 4.85534 4.89630 4.94408 5.03681 5.18163 5.30295 5.35077 5.44750 5.47406 5.51328 5.75958 5.82203 5.87713 6.20141 6.32463 6.51873 6.62565 7.15702 7.27152 8.71168 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.002262 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.339599 B =12374.266778 C =12788.339058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.048 0.952 9 C 0.284 3.716 10 N -0.365 5.365 11 N -0.279 5.279 12 C 0.101 3.899 13 C -0.306 4.306 14 C 0.327 3.673 15 N -0.583 5.583 16 C 0.361 3.639 17 N -0.589 5.589 18 C 0.446 3.554 19 N -0.460 5.460 20 C 0.037 3.963 21 C 0.126 3.874 22 N -1.002 6.002 23 S 2.818 3.182 24 N -1.252 6.252 25 O -1.012 7.012 26 O -1.012 7.012 27 C 0.125 3.875 28 C 0.050 3.950 29 H 0.274 0.726 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.240 0.760 33 H 0.233 0.767 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.424 0.576 39 H 0.426 0.574 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.729 -18.050 -5.496 26.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.590 4.590 8 H 0.067 0.933 9 C 0.165 3.835 10 N -0.151 5.151 11 N -0.094 5.094 12 C -0.094 4.094 13 C -0.323 4.323 14 C 0.080 3.920 15 N -0.307 5.307 16 C 0.069 3.931 17 N -0.314 5.314 18 C 0.195 3.805 19 N -0.177 5.177 20 C -0.090 4.090 21 C 0.001 3.999 22 N -0.844 5.844 23 S 2.824 3.176 24 N -0.930 5.930 25 O -0.995 6.995 26 O -0.994 6.994 27 C 0.000 4.000 28 C -0.077 4.077 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.256 0.744 33 H 0.249 0.751 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.134 0.866 38 H 0.253 0.747 39 H 0.258 0.742 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.122 0.878 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.830 -18.290 -4.580 25.950 hybrid contribution 0.369 1.763 -0.594 1.896 sum 18.199 -16.527 -5.174 25.122 Atomic orbital electron populations 1.70016 1.07446 1.28922 1.49405 1.25804 0.95881 1.02904 0.93567 0.85299 0.78377 0.77737 0.78719 1.19478 1.19560 1.19436 1.21377 0.92957 0.91004 1.53619 0.93330 1.19145 0.85930 0.80865 0.97533 1.49150 1.37230 1.28390 1.00360 1.76947 1.13365 1.09813 1.09234 1.24378 0.96562 0.95802 0.92668 1.19796 1.10309 1.05873 0.96291 1.19428 0.92457 0.91391 0.88771 1.67530 1.30259 1.32574 1.00377 1.25302 0.84144 0.83442 1.00260 1.68485 1.24309 1.23190 1.15432 1.19616 0.89373 0.84355 0.87144 1.58462 1.18575 1.21486 1.19156 1.22970 0.91570 0.97495 0.96964 1.21751 0.99685 0.91196 0.87288 1.57768 1.24556 1.68096 1.33954 1.00753 0.71440 0.72766 0.72670 1.53226 1.22072 1.41723 1.76011 1.93607 1.78192 1.87101 1.40599 1.93603 1.86033 1.48836 1.70959 1.21766 0.91328 0.95746 0.91169 1.22577 0.99304 0.95691 0.90145 0.91708 0.95041 0.94956 0.74428 0.75125 0.91698 0.87507 0.88119 0.86621 0.74679 0.74233 0.89053 0.86887 0.87847 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.49 13.29 21.45 0.28 -53.20 16 2 C 0.02 1.08 5.46 84.66 0.46 1.54 16 3 Si 0.98 43.63 29.54 68.60 2.03 45.66 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.55 -31.70 9.39 25.60 0.24 -31.46 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.28 15.59 6.19 85.64 0.53 16.12 16 10 N -0.36 -17.34 3.63 -348.96 -1.27 -18.61 16 11 N -0.28 -11.43 12.45 -56.46 -0.70 -12.14 16 12 C 0.10 3.01 10.67 85.65 0.91 3.93 16 13 C -0.31 -9.87 5.73 -21.29 -0.12 -9.99 16 14 C 0.33 13.78 8.04 134.15 1.08 14.86 16 15 N -0.58 -23.29 10.47 -198.10 -2.07 -25.36 16 16 C 0.36 10.49 12.24 180.87 2.21 12.70 16 17 N -0.59 -15.06 8.82 -197.01 -1.74 -16.80 16 18 C 0.45 11.25 6.43 133.64 0.86 12.11 16 19 N -0.46 -7.66 4.65 -699.69 -3.25 -10.92 16 20 C 0.04 0.45 5.40 86.38 0.47 0.92 16 21 C 0.13 1.15 6.53 86.35 0.56 1.71 16 22 N -1.00 -9.95 3.39 -512.15 -1.73 -11.68 16 23 S 2.82 36.25 6.70 -56.49 -0.38 35.88 16 24 N -1.25 -7.89 9.58 37.02 0.35 -7.54 16 25 O -1.01 -19.92 16.92 -128.00 -2.17 -22.08 16 26 O -1.01 -19.68 16.92 -128.00 -2.17 -21.85 16 27 C 0.13 1.18 6.53 86.35 0.56 1.74 16 28 C 0.05 0.63 4.85 86.38 0.42 1.04 16 29 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 30 H 0.03 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.03 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.24 4.24 6.90 -2.91 -0.02 4.22 16 33 H 0.23 4.67 8.06 -2.91 -0.02 4.64 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.11 1.34 4.94 -2.39 -0.01 1.33 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.12 0.86 7.22 -2.39 -0.02 0.84 16 38 H 0.42 1.16 8.96 -96.75 -0.87 0.29 16 39 H 0.43 1.71 8.96 -96.75 -0.87 0.84 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.11 0.86 7.22 -2.38 -0.02 0.84 16 42 H 0.10 1.42 7.66 -2.39 -0.02 1.40 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -83.11 370.02 -5.25 -88.36 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -0.63 Total: 5.06 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 8.19 Total: 25.22 kcal Atomic # 7 Polarization: -146.12 SS G_CDS: -10.13 Total: -156.25 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -4.33 Total: -43.93 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 36.25 SS G_CDS: -0.38 Total: 35.88 kcal Total: -83.11 -5.25 -88.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065575206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.306 kcal (2) G-P(sol) polarization free energy of solvation -83.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds