Wall clock time and date at job start Tue Mar 31 2020 05:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39733 * 125.77392 * 2 1 4 4 C 1.36152 * 107.85864 * 180.12180 * 3 2 1 5 5 N 1.39375 * 126.26721 * 179.90309 * 4 3 2 6 6 C 1.34779 * 119.99842 * 359.69299 * 5 4 3 7 7 O 1.21570 * 119.99844 * 359.97438 * 6 5 4 8 8 C 1.47806 * 120.00250 * 179.97438 * 6 5 4 9 9 C 1.39590 * 120.14722 * 180.02562 * 8 6 5 10 10 C 1.37956 * 119.85198 * 180.02562 * 9 8 6 11 11 C 1.38367 * 120.14377 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.84885 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.46923 * 89.99935 * 12 11 10 14 14 C 1.34433 * 126.81976 * 124.99393 * 13 12 11 15 15 N 1.30830 * 108.07650 * 179.73774 * 14 13 12 16 16 C 1.33244 * 109.82956 * 0.27201 * 15 14 13 17 17 N 1.30709 * 108.94525 * 359.97438 * 16 15 14 18 18 C 1.38361 * 120.29565 * 0.23371 * 11 10 9 19 19 C 1.37951 * 120.14845 * 359.48701 * 18 11 10 20 20 N 1.35815 * 107.46877 * 359.64343 * 4 3 2 21 21 C 1.46507 * 126.09122 * 180.19253 * 20 4 3 22 22 C 1.50697 * 109.46747 * 89.99682 * 21 20 4 23 23 H 1.07994 * 120.00752 * 359.97438 * 22 21 20 24 24 C 1.37884 * 119.99438 * 180.02562 * 22 21 20 25 25 N 1.31515 * 120.00206 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99828 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47440 * 89.99676 * 26 24 22 28 28 H 1.48498 * 109.47176 * 209.99570 * 26 24 22 29 29 H 1.48504 * 109.47429 * 329.99949 * 26 24 22 30 30 N 1.30830 * 125.78111 * 179.71956 * 2 1 3 31 31 H 1.08993 * 109.47352 * 270.25516 * 1 2 3 32 32 H 1.08995 * 109.47295 * 30.26369 * 1 2 3 33 33 H 1.09010 * 109.47037 * 150.25777 * 1 2 3 34 34 H 1.07994 * 126.07628 * 359.97438 * 3 2 1 35 35 H 0.97000 * 120.00618 * 179.68404 * 5 4 3 36 36 H 1.07997 * 120.07603 * 359.97438 * 9 8 6 37 37 H 1.07999 * 119.93075 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.47201 * 330.00341 * 12 11 10 39 39 H 1.09001 * 109.47004 * 210.00281 * 12 11 10 40 40 H 1.08002 * 125.96533 * 0.02562 * 14 13 12 41 41 H 1.08000 * 125.52705 * 180.02562 * 16 15 14 42 42 H 1.08001 * 119.92131 * 179.72165 * 18 11 10 43 43 H 1.07999 * 120.07364 * 180.25251 * 19 18 11 44 44 H 1.08988 * 109.46921 * 209.99815 * 21 20 4 45 45 H 1.09005 * 109.46742 * 330.00058 * 21 20 4 46 46 H 0.96997 * 119.99784 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.1337 0.0000 4 6 3.6193 0.7149 -0.0028 5 7 4.7495 1.5305 -0.0056 6 6 4.6128 2.8713 -0.0120 7 8 3.5038 3.3693 -0.0158 8 6 5.8113 3.7364 -0.0145 9 6 5.6733 5.1254 -0.0206 10 6 6.7960 5.9271 -0.0234 11 6 8.0568 5.3570 -0.0206 12 6 9.2788 6.2390 -0.0243 13 7 9.6744 6.5309 1.3557 14 6 10.8799 6.3162 1.9108 15 7 10.8302 6.7148 3.1559 16 6 9.6136 7.1822 3.4327 17 7 8.8690 7.0876 2.3626 18 6 8.2006 3.9809 -0.0200 19 6 7.0862 3.1678 -0.0114 20 7 3.6088 -0.6432 0.0036 21 6 4.7859 -1.5154 0.0074 22 6 5.1899 -1.8077 1.4295 23 1 4.6266 -1.3857 2.2486 24 6 6.2795 -2.6131 1.6849 25 7 6.9659 -3.1266 0.6875 26 14 6.7799 -2.9760 3.4476 27 1 6.0795 -4.1975 3.9196 28 1 8.2478 -3.1914 3.5111 29 1 6.4102 -1.8277 4.3137 30 7 2.2719 -1.0614 0.0052 31 1 -0.3634 0.0046 1.0276 32 1 -0.3633 0.8876 -0.5179 33 1 -0.3634 -0.8924 -0.5099 34 1 1.9874 2.1599 -0.0004 35 1 5.6344 1.1333 -0.0028 36 1 4.6898 5.5716 -0.0240 37 1 6.6907 7.0019 -0.0285 38 1 9.0526 7.1711 -0.5422 39 1 10.0943 5.7278 -0.5358 40 1 11.7406 5.8932 1.4142 41 1 9.2946 7.5762 4.3863 42 1 9.1876 3.5424 -0.0224 43 1 7.1999 2.0938 -0.0067 44 1 4.5478 -2.4491 -0.5019 45 1 5.6075 -1.0190 -0.5090 46 1 7.7321 -3.6935 0.8672 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068219135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:18 Heat of formation + Delta-G solvation = 165.321621 kcal Electronic energy + Delta-G solvation = -31268.585764 eV Core-core repulsion = 26969.256862 eV Total energy + Delta-G solvation = -4299.328902 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.155 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.34631 -40.99825 -39.96455 -38.57929 -35.01719 -34.83861 -33.82744 -32.14924 -31.63626 -31.48468 -31.24871 -29.20570 -28.44969 -27.11971 -26.05604 -23.82161 -23.14421 -22.82359 -22.22394 -22.02145 -20.99681 -19.86799 -19.42929 -17.84673 -17.53669 -16.88475 -16.61135 -16.47120 -15.71999 -15.62768 -15.25178 -15.07827 -15.01259 -14.75737 -14.37790 -14.25934 -14.05639 -13.96275 -13.64926 -13.24092 -12.92783 -12.83812 -12.77205 -12.53568 -12.43580 -12.06949 -11.93315 -11.80996 -11.60812 -11.37229 -11.11423 -10.92516 -10.45688 -10.37875 -10.35679 -10.12818 -10.05615 -9.98640 -9.85011 -9.58902 -9.28708 -9.24199 -8.75937 -7.94474 -7.48464 -6.37540 -4.46103 0.37887 1.07830 1.33100 1.95536 2.40669 2.69408 2.72454 3.03601 3.14307 3.21339 3.26022 3.47081 3.72764 3.73356 3.88723 4.02364 4.15733 4.21291 4.49948 4.52730 4.56203 4.67044 4.76729 4.94169 4.95789 5.04870 5.22469 5.32803 5.42716 5.59267 5.66327 5.87886 5.93231 6.01594 6.02525 6.08074 6.13105 6.13841 6.14382 6.25904 6.37075 6.43165 6.52204 6.63431 6.78780 7.00165 7.46510 7.53066 7.57895 7.75368 7.77693 7.84945 8.21383 8.57613 8.66987 9.21837 10.69446 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.007940 B = 0.002663 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3525.656000 B =10510.237546 C =13043.448253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.291 4.291 4 C 0.299 3.701 5 N -0.633 5.633 6 C 0.562 3.438 7 O -0.509 6.509 8 C -0.112 4.112 9 C -0.059 4.059 10 C -0.091 4.091 11 C -0.094 4.094 12 C 0.170 3.830 13 N -0.377 5.377 14 C 0.253 3.747 15 N -0.547 5.547 16 C 0.196 3.804 17 N -0.309 5.309 18 C -0.104 4.104 19 C -0.086 4.086 20 N -0.346 5.346 21 C 0.257 3.743 22 C -0.541 4.541 23 H 0.065 0.935 24 C 0.068 3.932 25 N -0.890 5.890 26 Si 0.905 3.095 27 H -0.275 1.275 28 H -0.282 1.282 29 H -0.272 1.272 30 N -0.282 5.282 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.162 0.838 35 H 0.415 0.585 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.219 0.781 41 H 0.216 0.784 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.057 0.943 45 H 0.043 0.957 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.673 19.927 -4.160 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.323 4.323 4 C 0.077 3.923 5 N -0.280 5.280 6 C 0.350 3.650 7 O -0.384 6.384 8 C -0.116 4.116 9 C -0.078 4.078 10 C -0.110 4.110 11 C -0.095 4.095 12 C 0.049 3.951 13 N -0.168 5.168 14 C -0.043 4.043 15 N -0.274 5.274 16 C -0.107 4.107 17 N -0.137 5.137 18 C -0.122 4.122 19 C -0.104 4.104 20 N -0.132 5.132 21 C 0.140 3.860 22 C -0.580 4.580 23 H 0.083 0.917 24 C -0.136 4.136 25 N -0.527 5.527 26 Si 0.732 3.268 27 H -0.201 1.201 28 H -0.208 1.208 29 H -0.197 1.197 30 N -0.107 5.107 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.179 0.821 35 H 0.253 0.747 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.235 0.765 41 H 0.232 0.768 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.753 19.023 -4.097 20.292 hybrid contribution 1.215 -0.007 0.845 1.480 sum 6.968 19.017 -3.252 20.513 Atomic orbital electron populations 1.20024 0.87526 1.02357 1.02191 1.22023 0.96559 0.90971 1.01923 1.21277 0.89037 1.00493 1.21453 1.17999 0.87849 0.83332 1.03141 1.42619 1.08442 1.05450 1.71450 1.18124 0.89172 0.80942 0.76801 1.90710 1.25941 1.73868 1.47928 1.19875 0.92504 0.94257 1.04951 1.21261 0.99826 0.91619 0.95086 1.20976 0.91162 1.00216 0.98653 1.19898 0.94334 0.93805 1.01463 1.20732 0.96619 1.00034 0.77722 1.50635 1.09095 1.46227 1.10831 1.26118 0.90547 0.97359 0.90308 1.70546 1.22660 1.20399 1.13834 1.26035 0.87523 0.98436 0.98672 1.78094 1.18187 1.19881 0.97508 1.20961 0.99091 0.92460 0.99721 1.21427 0.91501 1.00584 0.96915 1.49510 1.06498 1.02000 1.55168 1.19617 0.77804 0.89731 0.98898 1.21355 1.13344 1.31938 0.91350 0.91682 1.24926 0.95650 0.94824 0.98192 1.69915 1.19235 1.32471 1.31118 0.86372 0.77662 0.79169 0.83646 1.20113 1.20798 1.19673 1.77334 0.86128 1.21811 1.25435 0.91285 0.91121 0.91522 0.82069 0.74707 0.84072 0.85001 0.88124 0.86824 0.76515 0.76782 0.85115 0.84783 0.92455 0.93959 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.00 0.38 -0.55 16 2 C 0.05 1.01 7.20 -82.46 -0.59 0.42 16 3 C -0.29 -6.02 9.58 -39.77 -0.38 -6.40 16 4 C 0.30 6.37 7.68 -152.74 -1.17 5.20 16 5 N -0.63 -11.32 5.36 -12.21 -0.07 -11.39 16 6 C 0.56 9.26 7.74 -12.35 -0.10 9.17 16 7 O -0.51 -9.45 13.47 5.30 0.07 -9.38 16 8 C -0.11 -1.46 5.87 -104.97 -0.62 -2.08 16 9 C -0.06 -0.67 9.60 -39.18 -0.38 -1.04 16 10 C -0.09 -0.83 9.68 -39.64 -0.38 -1.22 16 11 C -0.09 -0.76 5.35 -104.53 -0.56 -1.32 16 12 C 0.17 0.89 6.67 -5.19 -0.03 0.86 16 13 N -0.38 -3.03 3.68 -63.81 -0.24 -3.27 16 14 C 0.25 1.88 12.63 -90.65 -1.14 0.73 16 15 N -0.55 -5.61 11.19 -15.83 -0.18 -5.79 16 16 C 0.20 1.94 13.03 -91.81 -1.20 0.74 16 17 N -0.31 -3.30 12.56 29.29 0.37 -2.93 16 18 C -0.10 -0.93 9.68 -39.64 -0.38 -1.31 16 19 C -0.09 -0.96 9.54 -39.18 -0.37 -1.34 16 20 N -0.35 -8.13 3.62 -61.45 -0.22 -8.36 16 21 C 0.26 6.39 6.02 -5.19 -0.03 6.36 16 22 C -0.54 -14.50 9.39 -34.44 -0.32 -14.83 16 23 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 24 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 25 N -0.89 -23.99 13.29 55.43 0.74 -23.25 16 26 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 30 N -0.28 -6.58 12.56 33.64 0.42 -6.16 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 34 H 0.16 3.23 5.83 -52.49 -0.31 2.92 16 35 H 0.42 6.83 6.03 -40.82 -0.25 6.59 16 36 H 0.14 1.56 7.65 -52.49 -0.40 1.16 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.10 0.40 8.08 -51.93 -0.42 -0.02 16 39 H 0.11 0.22 8.03 -51.93 -0.42 -0.20 16 40 H 0.22 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.22 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.13 1.46 6.41 -52.49 -0.34 1.13 16 44 H 0.06 1.53 8.14 -51.94 -0.42 1.11 16 45 H 0.04 1.01 7.52 -51.93 -0.39 0.62 16 46 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 402.60 15.07 6.07 6.07 Total: -1.00 -35.51 402.60 -10.89 -46.40 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.44 Total: 7.32 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -7.39 Total: -4.90 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.83 Total: -61.14 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.51 -10.89 -46.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068219135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.721 kcal (2) G-P(sol) polarization free energy of solvation -35.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds