Wall clock time and date at job start Tue Mar 31 2020 05:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39733 * 125.77392 * 2 1 4 4 C 1.36152 * 107.85864 * 180.12180 * 3 2 1 5 5 N 1.39375 * 126.26721 * 179.90309 * 4 3 2 6 6 C 1.34779 * 119.99842 * 359.69299 * 5 4 3 7 7 O 1.21570 * 119.99844 * 359.97438 * 6 5 4 8 8 C 1.47806 * 120.00250 * 179.97438 * 6 5 4 9 9 C 1.39590 * 120.14722 * 180.02562 * 8 6 5 10 10 C 1.37956 * 119.85198 * 180.02562 * 9 8 6 11 11 C 1.38367 * 120.14377 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.84885 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.46923 * 89.99935 * 12 11 10 14 14 C 1.34433 * 126.81976 * 124.99393 * 13 12 11 15 15 N 1.30830 * 108.07650 * 179.73774 * 14 13 12 16 16 C 1.33244 * 109.82956 * 0.27201 * 15 14 13 17 17 N 1.30709 * 108.94525 * 359.97438 * 16 15 14 18 18 C 1.38361 * 120.29565 * 0.23371 * 11 10 9 19 19 C 1.37951 * 120.14845 * 359.48701 * 18 11 10 20 20 N 1.35815 * 107.46877 * 359.64343 * 4 3 2 21 21 C 1.46507 * 126.09122 * 180.19253 * 20 4 3 22 22 C 1.50697 * 109.46747 * 89.99682 * 21 20 4 23 23 H 1.07994 * 120.00752 * 359.97438 * 22 21 20 24 24 C 1.37884 * 119.99438 * 180.02562 * 22 21 20 25 25 N 1.31515 * 120.00206 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99828 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47440 * 89.99676 * 26 24 22 28 28 H 1.48498 * 109.47176 * 209.99570 * 26 24 22 29 29 H 1.48504 * 109.47429 * 329.99949 * 26 24 22 30 30 N 1.30830 * 125.78111 * 179.71956 * 2 1 3 31 31 H 1.08993 * 109.47352 * 270.25516 * 1 2 3 32 32 H 1.08995 * 109.47295 * 30.26369 * 1 2 3 33 33 H 1.09010 * 109.47037 * 150.25777 * 1 2 3 34 34 H 1.07994 * 126.07628 * 359.97438 * 3 2 1 35 35 H 0.97000 * 120.00618 * 179.68404 * 5 4 3 36 36 H 1.07997 * 120.07603 * 359.97438 * 9 8 6 37 37 H 1.07999 * 119.93075 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.47201 * 330.00341 * 12 11 10 39 39 H 1.09001 * 109.47004 * 210.00281 * 12 11 10 40 40 H 1.08002 * 125.96533 * 0.02562 * 14 13 12 41 41 H 1.08000 * 125.52705 * 180.02562 * 16 15 14 42 42 H 1.08001 * 119.92131 * 179.72165 * 18 11 10 43 43 H 1.07999 * 120.07364 * 180.25251 * 19 18 11 44 44 H 1.08988 * 109.46921 * 209.99815 * 21 20 4 45 45 H 1.09005 * 109.46742 * 330.00058 * 21 20 4 46 46 H 0.96997 * 119.99784 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.1337 0.0000 4 6 3.6193 0.7149 -0.0028 5 7 4.7495 1.5305 -0.0056 6 6 4.6128 2.8713 -0.0120 7 8 3.5038 3.3693 -0.0158 8 6 5.8113 3.7364 -0.0145 9 6 5.6733 5.1254 -0.0206 10 6 6.7960 5.9271 -0.0234 11 6 8.0568 5.3570 -0.0206 12 6 9.2788 6.2390 -0.0243 13 7 9.6744 6.5309 1.3557 14 6 10.8799 6.3162 1.9108 15 7 10.8302 6.7148 3.1559 16 6 9.6136 7.1822 3.4327 17 7 8.8690 7.0876 2.3626 18 6 8.2006 3.9809 -0.0200 19 6 7.0862 3.1678 -0.0114 20 7 3.6088 -0.6432 0.0036 21 6 4.7859 -1.5154 0.0074 22 6 5.1899 -1.8077 1.4295 23 1 4.6266 -1.3857 2.2486 24 6 6.2795 -2.6131 1.6849 25 7 6.9659 -3.1266 0.6875 26 14 6.7799 -2.9760 3.4476 27 1 6.0795 -4.1975 3.9196 28 1 8.2478 -3.1914 3.5111 29 1 6.4102 -1.8277 4.3137 30 7 2.2719 -1.0614 0.0052 31 1 -0.3634 0.0046 1.0276 32 1 -0.3633 0.8876 -0.5179 33 1 -0.3634 -0.8924 -0.5099 34 1 1.9874 2.1599 -0.0004 35 1 5.6344 1.1333 -0.0028 36 1 4.6898 5.5716 -0.0240 37 1 6.6907 7.0019 -0.0285 38 1 9.0526 7.1711 -0.5422 39 1 10.0943 5.7278 -0.5358 40 1 11.7406 5.8932 1.4142 41 1 9.2946 7.5762 4.3863 42 1 9.1876 3.5424 -0.0224 43 1 7.1999 2.0938 -0.0067 44 1 4.5478 -2.4491 -0.5019 45 1 5.6075 -1.0190 -0.5090 46 1 7.7321 -3.6935 0.8672 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068219135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:17 Heat of formation + Delta-G solvation = 145.905384 kcal Electronic energy + Delta-G solvation = -31269.427715 eV Core-core repulsion = 26969.256862 eV Total energy + Delta-G solvation = -4300.170853 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.93772 -42.51122 -41.15316 -39.66143 -36.40608 -35.71615 -35.59216 -33.88733 -32.48035 -32.18279 -32.00340 -30.78536 -29.91711 -27.95943 -27.80780 -25.02036 -24.51034 -23.88823 -22.93627 -22.78896 -21.98736 -21.37771 -20.81350 -19.04638 -18.82271 -18.25285 -18.06377 -17.34272 -16.88432 -16.73568 -16.44376 -16.33827 -15.86442 -15.84843 -15.67491 -15.58974 -14.99249 -14.84417 -14.61237 -14.50385 -14.40901 -14.06962 -13.80726 -13.69293 -13.52462 -13.42808 -13.17591 -13.15248 -12.92726 -12.75466 -12.54470 -12.33983 -12.11035 -12.01909 -11.73838 -11.54164 -11.09981 -11.01412 -10.79779 -10.75906 -10.61290 -10.07900 -10.07140 -9.67531 -9.12876 -8.40069 -6.57487 -0.50981 0.29659 0.74671 0.85032 1.23911 1.32887 1.35612 1.44047 1.46319 1.75015 2.03038 2.06978 2.11470 2.31133 2.74541 2.90117 3.24768 3.45567 3.59158 3.65499 3.78110 3.84502 3.88348 4.13548 4.17562 4.23868 4.29532 4.49813 4.53094 4.56368 4.63752 4.70651 4.77525 4.80733 4.87756 4.89548 4.94783 5.12239 5.15841 5.18145 5.27233 5.28986 5.39490 5.47487 5.50335 5.72797 5.74678 5.91503 5.97043 6.05042 6.19703 6.52229 6.81425 6.95976 7.14529 7.17888 8.66450 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.007940 B = 0.002663 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3525.656000 B =10510.237546 C =13043.448253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.059 3.941 3 C -0.304 4.304 4 C 0.295 3.705 5 N -0.633 5.633 6 C 0.562 3.438 7 O -0.535 6.535 8 C -0.135 4.135 9 C -0.067 4.067 10 C -0.091 4.091 11 C -0.081 4.081 12 C 0.166 3.834 13 N -0.379 5.379 14 C 0.261 3.739 15 N -0.584 5.584 16 C 0.186 3.814 17 N -0.344 5.344 18 C -0.101 4.101 19 C -0.095 4.095 20 N -0.368 5.368 21 C 0.273 3.727 22 C -0.559 4.559 23 H 0.045 0.955 24 C 0.032 3.968 25 N -0.910 5.910 26 Si 0.965 3.035 27 H -0.275 1.275 28 H -0.266 1.266 29 H -0.275 1.275 30 N -0.326 5.326 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.168 0.832 35 H 0.419 0.581 36 H 0.135 0.865 37 H 0.150 0.850 38 H 0.118 0.882 39 H 0.158 0.842 40 H 0.263 0.737 41 H 0.230 0.770 42 H 0.161 0.839 43 H 0.131 0.869 44 H 0.030 0.970 45 H 0.047 0.953 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.741 21.370 -4.186 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.335 4.335 4 C 0.073 3.927 5 N -0.281 5.281 6 C 0.352 3.648 7 O -0.412 6.412 8 C -0.139 4.139 9 C -0.086 4.086 10 C -0.109 4.109 11 C -0.082 4.082 12 C 0.046 3.954 13 N -0.170 5.170 14 C -0.034 4.034 15 N -0.312 5.312 16 C -0.117 4.117 17 N -0.172 5.172 18 C -0.119 4.119 19 C -0.113 4.113 20 N -0.154 5.154 21 C 0.154 3.846 22 C -0.597 4.597 23 H 0.063 0.937 24 C -0.170 4.170 25 N -0.548 5.548 26 Si 0.789 3.211 27 H -0.201 1.201 28 H -0.190 1.190 29 H -0.200 1.200 30 N -0.150 5.150 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.186 0.814 35 H 0.258 0.742 36 H 0.153 0.847 37 H 0.168 0.832 38 H 0.136 0.864 39 H 0.175 0.825 40 H 0.278 0.722 41 H 0.246 0.754 42 H 0.179 0.821 43 H 0.148 0.852 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.830 20.480 -4.148 22.315 hybrid contribution 0.600 -0.342 0.799 1.056 sum 8.430 20.138 -3.350 22.087 Atomic orbital electron populations 1.20235 0.83735 1.04161 1.03757 1.22888 0.98825 0.89893 0.99035 1.21496 0.89036 1.00928 1.22078 1.18394 0.89339 0.82905 1.02035 1.42777 1.07781 1.05796 1.71741 1.18791 0.90182 0.80440 0.75363 1.90667 1.27323 1.74063 1.49163 1.19674 0.91597 0.94301 1.08312 1.21320 1.00625 0.91103 0.95514 1.21220 0.90967 1.00914 0.97805 1.20259 0.95209 0.93983 0.98724 1.21114 0.96673 1.00764 0.76833 1.50737 1.09112 1.45912 1.11191 1.26970 0.91260 0.95639 0.89568 1.70545 1.23082 1.21843 1.15688 1.26427 0.87629 0.98344 0.99311 1.78015 1.19595 1.21198 0.98428 1.21300 0.99497 0.92692 0.98416 1.21515 0.91635 1.00877 0.97319 1.49338 1.06357 1.02606 1.57109 1.19230 0.78570 0.88983 0.97779 1.21398 1.13877 1.32842 0.91586 0.93700 1.25622 0.95285 0.94213 1.01913 1.69976 1.19496 1.32507 1.32809 0.85448 0.78092 0.78563 0.78947 1.20067 1.18995 1.20005 1.77282 0.86353 1.23556 1.27858 0.89673 0.88537 0.90483 0.81438 0.74187 0.84667 0.83208 0.86380 0.82474 0.72179 0.75412 0.82144 0.85152 0.95233 0.93485 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.72 10.44 71.24 0.74 -0.98 16 2 C 0.06 2.41 7.20 43.07 0.31 2.72 16 3 C -0.30 -12.85 9.58 22.15 0.21 -12.64 16 4 C 0.30 13.08 7.68 131.19 1.01 14.09 16 5 N -0.63 -23.64 5.36 -310.81 -1.67 -25.31 16 6 C 0.56 19.23 7.74 86.77 0.67 19.90 16 7 O -0.54 -20.57 13.47 -3.94 -0.05 -20.63 16 8 C -0.14 -3.56 5.87 -20.09 -0.12 -3.68 16 9 C -0.07 -1.49 9.60 22.53 0.22 -1.28 16 10 C -0.09 -1.48 9.68 22.23 0.22 -1.26 16 11 C -0.08 -1.06 5.35 -19.80 -0.11 -1.16 16 12 C 0.17 1.00 6.67 85.63 0.57 1.58 16 13 N -0.38 -4.83 3.68 -355.80 -1.31 -6.14 16 14 C 0.26 2.96 12.63 180.36 2.28 5.24 16 15 N -0.58 -10.84 11.19 -204.00 -2.28 -13.12 16 16 C 0.19 3.46 13.03 180.77 2.36 5.82 16 17 N -0.34 -6.74 12.56 -61.25 -0.77 -7.51 16 18 C -0.10 -1.52 9.68 22.23 0.22 -1.31 16 19 C -0.09 -2.07 9.54 22.53 0.21 -1.85 16 20 N -0.37 -18.07 3.62 -348.31 -1.26 -19.34 16 21 C 0.27 14.19 6.02 85.63 0.52 14.71 16 22 C -0.56 -30.85 9.39 25.60 0.24 -30.61 16 23 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 24 C 0.03 1.69 5.46 84.66 0.46 2.15 16 25 N -0.91 -49.25 13.29 21.45 0.28 -48.97 16 26 Si 0.97 42.26 29.54 68.60 2.03 44.28 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 28 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 29 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 30 N -0.33 -15.70 12.56 -47.47 -0.60 -16.30 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.17 6.84 5.83 -2.91 -0.02 6.82 16 35 H 0.42 14.49 6.03 -92.71 -0.56 13.94 16 36 H 0.14 3.09 7.65 -2.91 -0.02 3.07 16 37 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.12 0.39 8.08 -2.39 -0.02 0.37 16 39 H 0.16 -0.37 8.03 -2.39 -0.02 -0.39 16 40 H 0.26 0.11 8.06 -2.91 -0.02 0.09 16 41 H 0.23 3.01 8.06 -2.91 -0.02 2.98 16 42 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.13 2.86 6.41 -2.91 -0.02 2.84 16 44 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.05 2.35 7.52 -2.38 -0.02 2.33 16 46 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -80.17 402.60 4.86 -75.31 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.48 Total: 26.28 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 10.00 Total: 11.44 kcal Atomic # 7 Polarization: -129.08 SS G_CDS: -7.60 Total: -136.68 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.05 Total: -20.63 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -80.17 4.86 -75.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068219135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.216 kcal (2) G-P(sol) polarization free energy of solvation -80.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds