Wall clock time and date at job start Tue Mar 31 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99774 * 2 1 4 4 C 1.53002 * 109.47529 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47122 * 64.99108 * 4 3 2 6 6 C 1.46496 * 120.00137 * 275.00390 * 5 4 3 7 7 C 1.50689 * 109.47506 * 274.99886 * 6 5 4 8 8 H 1.08004 * 119.99706 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00329 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00196 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00008 * 0.02562 * 9 7 6 12 12 H 1.48491 * 109.47253 * 89.99829 * 11 9 7 13 13 H 1.48503 * 109.46958 * 210.00105 * 11 9 7 14 14 H 1.48501 * 109.46825 * 329.99509 * 11 9 7 15 15 S 1.65602 * 119.99487 * 95.00659 * 5 4 3 16 16 O 1.42097 * 106.40156 * 156.46346 * 15 5 4 17 17 O 1.42097 * 106.40246 * 23.53652 * 15 5 4 18 18 C 1.76203 * 107.21512 * 270.00091 * 15 5 4 19 19 C 1.38756 * 119.75071 * 269.97595 * 18 15 5 20 20 C 1.37919 * 120.67479 * 180.02562 * 19 18 15 21 21 C 1.38914 * 119.81423 * 359.97438 * 20 19 18 22 22 O 1.34999 * 120.78190 * 180.02562 * 21 20 19 23 23 C 1.34196 * 121.47200 * 179.97438 * 22 21 20 24 24 O 1.21778 * 119.15996 * 180.02562 * 23 22 21 25 25 C 1.41180 * 121.68195 * 359.97438 * 23 22 21 26 26 C 1.35703 * 119.79708 * 0.02562 * 25 23 22 27 27 C 1.40584 * 119.34701 * 359.74538 * 21 20 19 28 28 C 1.36662 * 119.75451 * 90.00593 * 18 15 5 29 29 H 1.09001 * 109.47279 * 60.00691 * 1 2 3 30 30 H 1.09008 * 109.46855 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47721 * 299.99866 * 1 2 3 32 32 H 1.09000 * 109.47395 * 59.99377 * 3 2 1 33 33 H 1.09000 * 109.47193 * 299.99480 * 3 2 1 34 34 H 1.09011 * 109.46644 * 304.99993 * 4 3 2 35 35 H 1.08992 * 109.47390 * 185.00001 * 4 3 2 36 36 H 1.09004 * 109.47283 * 35.00500 * 6 5 4 37 37 H 1.09004 * 109.46675 * 155.00187 * 6 5 4 38 38 H 0.97003 * 120.00621 * 179.97438 * 10 9 7 39 39 H 1.08007 * 119.66594 * 0.02562 * 19 18 15 40 40 H 1.07992 * 120.09421 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.10078 * 180.02562 * 25 23 22 42 42 H 1.08001 * 120.91068 * 180.02562 * 26 25 23 43 43 H 1.08002 * 120.13626 * 359.97438 * 28 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.0016 -0.8955 -1.3756 7 6 5.3000 -1.4248 -0.8237 8 1 6.0333 -0.7423 -0.4199 9 6 5.5520 -2.7802 -0.8341 10 7 6.6851 -3.2422 -0.3520 11 14 4.2841 -3.9606 -1.5331 12 1 4.5350 -4.1545 -2.9837 13 1 4.3857 -5.2669 -0.8341 14 1 2.9236 -3.3987 -1.3367 15 16 4.4474 1.5121 -2.5244 16 8 5.3033 0.7102 -3.3267 17 8 4.8441 2.7593 -1.9710 18 6 3.0119 1.8324 -3.4946 19 6 2.6725 0.9702 -4.5275 20 6 1.5534 1.2029 -5.2993 21 6 0.7554 2.3105 -5.0423 22 8 -0.3447 2.5568 -5.7852 23 6 -1.1257 3.6221 -5.5487 24 8 -2.1084 3.8036 -6.2447 25 6 -0.8377 4.5374 -4.5131 26 6 0.2538 4.3475 -3.7295 27 6 1.0991 3.1785 -3.9912 28 6 2.2415 2.9283 -3.2247 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6884 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8507 0.5687 0.8428 35 1 3.9783 2.1767 0.0902 36 1 3.1685 -1.3222 -0.8169 37 1 3.9139 -1.1718 -2.4263 38 1 6.8623 -4.1959 -0.3590 39 1 3.2910 0.1080 -4.7292 40 1 1.2978 0.5256 -6.1006 41 1 -1.4840 5.3862 -4.3451 42 1 0.4909 5.0361 -2.9320 43 1 2.5110 3.5956 -2.4194 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069416852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:40 Heat of formation + Delta-G solvation = -127.811354 kcal Electronic energy + Delta-G solvation = -32023.216197 eV Core-core repulsion = 27548.482788 eV Total energy + Delta-G solvation = -4474.733409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.101 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.30334 -39.32103 -38.05394 -37.62942 -36.94230 -35.65726 -35.43968 -35.04285 -32.51389 -31.45402 -30.47890 -29.94745 -27.31490 -25.96783 -25.09641 -24.85316 -23.43209 -22.76153 -21.76818 -20.30925 -19.17164 -18.12809 -17.82422 -17.27007 -17.15088 -17.07562 -16.48061 -16.22559 -15.92057 -15.82111 -15.53111 -15.11208 -14.84924 -14.55214 -14.35587 -14.15954 -13.92113 -13.81136 -13.36101 -13.25142 -12.82146 -12.62719 -12.49401 -12.43932 -12.19046 -12.00721 -11.90220 -11.69907 -11.50630 -11.32327 -11.19226 -11.02055 -10.90775 -10.72628 -10.72461 -10.41221 -10.22024 -9.65671 -9.55840 -9.38359 -8.99641 -8.57797 -8.22832 -6.07507 -4.06460 -0.22441 0.22989 0.71113 1.10128 1.93749 2.29010 3.06825 3.28309 3.34775 3.36527 3.44752 3.61777 3.82414 3.88357 3.89675 4.07363 4.39756 4.40325 4.55233 4.68782 4.78039 5.00161 5.04253 5.11534 5.13124 5.24065 5.28756 5.33078 5.36915 5.39254 5.41115 5.45470 5.51797 5.54190 5.67807 5.68745 6.06595 6.09645 6.32129 6.70725 6.81094 7.02337 7.07105 7.21514 7.33633 7.59507 8.48211 8.96364 9.51836 11.05898 Molecular weight = 367.10amu Principal moments of inertia in cm(-1) A = 0.012287 B = 0.003420 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.370647 B = 8185.273819 C = 8270.025014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.039 3.961 4 C 0.119 3.881 5 N -0.965 5.965 6 C 0.226 3.774 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.075 3.925 10 N -0.896 5.896 11 Si 0.866 3.134 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.260 1.260 15 S 2.682 3.318 16 O -0.930 6.930 17 O -0.968 6.968 18 C -0.696 4.696 19 C 0.035 3.965 20 C -0.151 4.151 21 C 0.189 3.811 22 O -0.270 6.270 23 C 0.509 3.491 24 O -0.463 6.463 25 C -0.254 4.254 26 C 0.011 3.989 27 C -0.186 4.186 28 C 0.046 3.954 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.264 0.736 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.166 0.834 42 H 0.158 0.842 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.481 14.030 -3.120 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.287 6.287 3 C -0.040 4.040 4 C -0.007 4.007 5 N -0.804 5.804 6 C 0.103 3.897 7 C -0.570 4.570 8 H 0.096 0.904 9 C -0.127 4.127 10 N -0.534 5.534 11 Si 0.693 3.307 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.185 1.185 15 S 2.768 3.232 16 O -0.920 6.920 17 O -0.958 6.958 18 C -0.778 4.778 19 C 0.016 3.984 20 C -0.170 4.170 21 C 0.143 3.857 22 O -0.181 6.181 23 C 0.358 3.642 24 O -0.351 6.351 25 C -0.273 4.273 26 C -0.008 4.008 27 C -0.188 4.188 28 C 0.027 3.973 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.178 0.822 40 H 0.171 0.829 41 H 0.184 0.816 42 H 0.176 0.824 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.007 13.949 -3.780 20.126 hybrid contribution -1.650 -0.427 -0.488 1.773 sum -15.657 13.522 -4.268 21.123 Atomic orbital electron populations 1.22718 0.82220 1.02582 0.99203 1.88099 1.18507 1.26980 1.95132 1.23229 0.95683 0.85441 0.99629 1.21417 0.90579 0.99816 0.88933 1.57128 1.81710 1.18022 1.23520 1.19607 0.99275 0.73706 0.97117 1.21349 1.01676 0.93093 1.40852 0.90376 1.24814 0.95171 0.98010 0.94748 1.69887 1.23545 1.14020 1.45960 0.86996 0.82836 0.81072 0.79815 1.19893 1.21062 1.18456 1.02528 0.73893 0.73220 0.73545 1.93633 1.60843 1.68559 1.69000 1.93516 1.80327 1.43757 1.78190 1.31493 1.25904 1.04902 1.15512 1.21086 0.92697 0.95974 0.88650 1.20726 0.95466 0.97169 1.03656 1.19318 0.84107 0.93924 0.88320 1.83597 1.33620 1.46181 1.54698 1.19333 0.81598 0.78761 0.84546 1.90992 1.23763 1.71063 1.49273 1.22571 1.02100 1.03554 0.99090 1.22903 0.90032 0.92473 0.95351 1.19185 1.00285 0.98705 1.00633 1.20693 0.88819 0.93072 0.94763 0.94803 0.89825 0.94434 0.92481 0.94271 0.87739 0.88202 0.92723 0.95688 0.92555 0.82156 0.82858 0.81635 0.82409 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.37 -5.37 9.02 -35.23 -0.32 -5.69 16 3 C 0.04 0.47 6.28 37.16 0.23 0.70 16 4 C 0.12 1.74 6.13 -4.04 -0.02 1.72 16 5 N -0.97 -17.38 2.76 -115.66 -0.32 -17.70 16 6 C 0.23 4.94 4.01 -5.20 -0.02 4.91 16 7 C -0.53 -14.31 9.94 -34.45 -0.34 -14.65 16 8 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 9 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 11 Si 0.87 20.42 27.47 -169.99 -4.67 15.75 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 15 S 2.68 45.72 5.64 -107.50 -0.61 45.11 16 16 O -0.93 -19.43 16.22 -57.17 -0.93 -20.36 16 17 O -0.97 -16.65 15.79 -57.17 -0.90 -17.55 16 18 C -0.70 -9.12 5.94 -39.96 -0.24 -9.36 16 19 C 0.03 0.43 9.49 -39.51 -0.37 0.05 16 20 C -0.15 -1.63 10.01 -39.45 -0.39 -2.03 16 21 C 0.19 2.11 6.76 -38.45 -0.26 1.85 16 22 O -0.27 -3.26 9.82 -20.66 -0.20 -3.46 16 23 C 0.51 5.99 7.89 31.85 0.25 6.24 16 24 O -0.46 -6.82 17.91 -19.58 -0.35 -7.17 16 25 C -0.25 -2.04 9.94 -39.37 -0.39 -2.43 16 26 C 0.01 0.08 10.13 -37.11 -0.38 -0.30 16 27 C -0.19 -1.83 5.87 -105.04 -0.62 -2.45 16 28 C 0.05 0.48 8.09 -39.56 -0.32 0.16 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.41 6.94 -51.93 -0.36 0.05 16 34 H 0.10 1.65 8.11 -51.92 -0.42 1.23 16 35 H 0.10 1.25 6.91 -51.93 -0.36 0.89 16 36 H 0.05 1.19 5.66 -51.93 -0.29 0.90 16 37 H 0.03 0.54 7.04 -51.93 -0.37 0.17 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.16 1.91 7.59 -52.48 -0.40 1.51 16 40 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 41 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.16 0.52 8.06 -52.49 -0.42 0.09 16 43 H 0.15 1.26 7.57 -52.49 -0.40 0.86 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -35.88 379.21 -8.81 -44.69 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.14 Total: -1.18 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.86 Total: -12.14 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.45 Total: -43.72 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -2.70 Total: -54.22 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Atomic # 16 Polarization: 45.72 SS G_CDS: -0.61 Total: 45.11 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.88 -8.81 -44.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069416852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.120 kcal (2) G-P(sol) polarization free energy of solvation -35.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds