Wall clock time and date at job start Tue Mar 31 2020 05:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48501 * 109.47140 * 270.00344 * 3 2 1 5 5 H 1.48500 * 109.46898 * 30.00015 * 3 2 1 6 6 H 1.48499 * 109.47159 * 149.99997 * 3 2 1 7 7 C 1.37877 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00036 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47226 * 180.02562 * 9 7 2 11 11 C 1.46495 * 120.00110 * 270.00788 * 10 9 7 12 12 C 1.50697 * 109.47161 * 285.89577 * 11 10 9 13 13 C 1.34515 * 125.78754 * 84.14393 * 12 11 10 14 14 C 1.41387 * 106.84213 * 179.97438 * 13 12 11 15 15 C 1.34518 * 106.83922 * 359.97438 * 14 13 12 16 16 O 1.34300 * 125.79235 * 263.83468 * 12 11 10 17 17 C 1.34777 * 119.99780 * 90.00703 * 10 9 7 18 18 O 1.21558 * 119.99603 * 5.07052 * 17 10 9 19 19 C 1.47839 * 120.00406 * 185.07430 * 17 10 9 20 20 C 1.39576 * 120.14204 * 308.09139 * 19 17 10 21 21 C 1.37956 * 119.85216 * 179.97438 * 20 19 17 22 22 C 1.38361 * 120.14661 * 359.97438 * 21 20 19 23 23 C 1.50702 * 119.85168 * 179.97438 * 22 21 20 24 24 N 1.46498 * 109.47135 * 89.99920 * 23 22 21 25 25 C 1.34432 * 126.82365 * 124.99563 * 24 23 22 26 26 N 1.30831 * 108.07779 * 179.73928 * 25 24 23 27 27 C 1.33234 * 109.83061 * 0.26564 * 26 25 24 28 28 N 1.30720 * 108.94548 * 0.02562 * 27 26 25 29 29 C 1.38358 * 120.28921 * 0.25010 * 22 21 20 30 30 C 1.37952 * 120.14631 * 359.49576 * 29 22 21 31 31 H 0.97000 * 120.00370 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.46600 * 60.00718 * 9 7 2 33 33 H 1.08994 * 109.47856 * 300.01110 * 9 7 2 34 34 H 1.08994 * 109.47668 * 45.89904 * 11 10 9 35 35 H 1.09006 * 109.46839 * 165.90351 * 11 10 9 36 36 H 1.08001 * 126.57797 * 359.96133 * 13 12 11 37 37 H 1.07998 * 126.57817 * 179.97438 * 14 13 12 38 38 H 1.08000 * 125.78548 * 179.97438 * 15 14 13 39 39 H 1.07996 * 120.07577 * 359.95055 * 20 19 17 40 40 H 1.08003 * 119.92822 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47226 * 329.99464 * 23 22 21 42 42 H 1.09006 * 109.46859 * 209.99933 * 23 22 21 43 43 H 1.08002 * 125.96188 * 0.02562 * 25 24 23 44 44 H 1.07998 * 125.52970 * 180.02562 * 27 26 25 45 45 H 1.08002 * 119.92616 * 179.74248 * 29 22 21 46 46 H 1.08007 * 120.07531 * 180.25211 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6793 -4.1693 -1.2692 12 6 1.5849 -4.9920 -1.8990 13 6 0.5853 -4.5176 -2.6639 14 6 -0.2052 -5.6279 -3.0398 15 6 0.3590 -6.7145 -2.4825 16 8 1.4456 -6.3238 -1.7966 17 6 2.6409 -4.1249 1.1667 18 8 2.1774 -3.7261 2.2173 19 6 3.6848 -5.1717 1.1694 20 6 3.5322 -6.3158 0.3846 21 6 4.5103 -7.2886 0.3913 22 6 5.6410 -7.1318 1.1731 23 6 6.7051 -8.1990 1.1758 24 7 7.6874 -7.9116 0.1276 25 6 9.0170 -7.7865 0.2819 26 7 9.5400 -7.5362 -0.8909 27 6 8.5797 -7.4885 -1.8132 28 7 7.4269 -7.7083 -1.2373 29 6 5.7963 -6.0022 1.9569 30 6 4.8282 -5.0195 1.9554 31 1 -0.4851 0.8400 0.0004 32 1 0.6242 -2.5566 -0.8904 33 1 0.6246 -2.5571 0.8895 34 1 2.9558 -3.3571 -1.9414 35 1 3.5485 -4.8008 -1.0854 36 1 0.4184 -3.4864 -2.9381 37 1 -1.0919 -5.6076 -3.6560 38 1 0.0007 -7.7292 -2.5738 39 1 2.6501 -6.4395 -0.2261 40 1 4.3932 -8.1746 -0.2152 41 1 6.2466 -9.1698 0.9878 42 1 7.2024 -8.2138 2.1457 43 1 9.5594 -7.8811 1.2111 44 1 8.7293 -7.2991 -2.8658 45 1 6.6793 -5.8878 2.5681 46 1 4.9525 -4.1363 2.5645 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069419677.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:28 Heat of formation + Delta-G solvation = 116.127533 kcal Electronic energy + Delta-G solvation = -32398.432708 eV Core-core repulsion = 28064.677840 eV Total energy + Delta-G solvation = -4333.754869 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.36287 -42.25026 -40.03206 -38.30388 -35.35195 -34.81668 -32.83201 -32.74560 -31.45293 -31.25543 -31.05975 -30.13560 -27.96929 -26.75747 -25.44244 -23.64413 -22.92575 -22.38727 -22.06619 -21.56741 -21.22050 -20.42145 -19.19917 -17.64661 -17.40104 -17.05931 -16.46182 -16.28632 -16.10189 -15.66592 -15.39942 -15.16006 -14.92496 -14.59366 -14.47272 -14.33935 -14.09922 -13.67118 -13.53641 -13.17309 -12.93737 -12.83033 -12.58891 -12.54920 -12.43917 -12.17513 -12.11120 -11.73165 -11.44703 -11.25619 -11.06956 -10.93119 -10.63529 -10.26695 -10.23842 -10.01722 -9.93872 -9.78625 -9.64316 -9.25021 -8.98893 -8.80465 -8.47950 -8.28264 -7.89815 -6.09500 -4.14925 0.81419 1.33111 1.43502 1.90023 2.16686 2.77289 2.85185 3.03661 3.27080 3.28962 3.34529 3.38908 3.64908 3.96039 4.04008 4.09935 4.35346 4.40544 4.65609 4.75825 4.84673 4.88471 4.94353 5.00139 5.08288 5.17863 5.25179 5.26736 5.38179 5.47929 5.53034 5.73840 5.89565 5.94492 5.98989 6.04356 6.18270 6.21496 6.23097 6.27671 6.36195 6.47995 6.53647 6.74844 6.79948 6.97281 7.29605 7.39120 7.42911 7.86081 7.86328 8.15391 8.19793 8.76107 8.92883 9.50256 10.98654 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.008646 B = 0.003009 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3237.610663 B = 9301.944951 C =10791.713761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.244 3.756 10 N -0.584 5.584 11 C 0.181 3.819 12 C -0.028 4.028 13 C -0.185 4.185 14 C -0.211 4.211 15 C -0.050 4.050 16 O -0.180 6.180 17 C 0.550 3.450 18 O -0.526 6.526 19 C -0.100 4.100 20 C -0.100 4.100 21 C -0.086 4.086 22 C -0.109 4.109 23 C 0.173 3.827 24 N -0.374 5.374 25 C 0.250 3.750 26 N -0.549 5.549 27 C 0.194 3.806 28 N -0.306 5.306 29 C -0.104 4.104 30 C -0.076 4.076 31 H 0.264 0.736 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.198 0.802 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.217 0.783 44 H 0.215 0.785 45 H 0.125 0.875 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.980 -19.725 -2.168 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.077 0.923 9 C 0.126 3.874 10 N -0.314 5.314 11 C 0.057 3.943 12 C -0.079 4.079 13 C -0.205 4.205 14 C -0.230 4.230 15 C -0.118 4.118 16 O -0.076 6.076 17 C 0.336 3.664 18 O -0.403 6.403 19 C -0.104 4.104 20 C -0.118 4.118 21 C -0.104 4.104 22 C -0.111 4.111 23 C 0.052 3.948 24 N -0.165 5.165 25 C -0.047 4.047 26 N -0.276 5.276 27 C -0.109 4.109 28 N -0.133 5.133 29 C -0.123 4.123 30 C -0.095 4.095 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.171 0.829 37 H 0.163 0.837 38 H 0.215 0.785 39 H 0.159 0.841 40 H 0.145 0.855 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.233 0.767 44 H 0.232 0.768 45 H 0.143 0.857 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.353 -19.522 -1.819 22.656 hybrid contribution 0.083 1.053 -0.023 1.056 sum 11.436 -18.469 -1.842 21.801 Atomic orbital electron populations 1.69933 1.05988 1.27118 1.49995 1.24919 0.94870 0.99191 0.94917 0.86497 0.79856 0.83012 0.78083 1.20550 1.21048 1.19860 1.21406 0.93397 0.90496 1.51691 0.92310 1.19399 0.87426 0.81552 0.99073 1.48234 1.45689 1.34386 1.03118 1.20058 0.91625 0.95519 0.87106 1.23041 1.01706 0.80605 1.02521 1.21766 0.96010 1.00646 1.02083 1.21842 1.02933 0.92543 1.05691 1.23941 0.88871 1.00070 0.98899 1.83909 1.41174 1.23727 1.58830 1.18266 0.82151 0.81506 0.84470 1.90779 1.57843 1.60758 1.30884 1.20343 0.96026 0.96048 0.97984 1.21693 0.99869 0.92825 0.97436 1.20885 0.92947 0.99080 0.97522 1.19756 0.95666 0.96157 0.99471 1.20708 0.87949 0.97959 0.88225 1.50673 1.06899 1.52104 1.06822 1.26070 0.82583 0.96712 0.99297 1.70526 1.33837 1.24391 0.98864 1.26023 0.85338 0.98639 1.00926 1.78122 1.23561 1.23889 0.87776 1.20898 0.99014 0.93175 0.99190 1.21164 0.92210 0.99054 0.97065 0.92629 0.94262 0.93578 0.87252 0.88812 0.82946 0.83696 0.78516 0.84076 0.85505 0.88348 0.87110 0.76671 0.76845 0.85676 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.74 9.39 -34.44 -0.32 -15.07 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.24 6.30 5.14 -5.19 -0.03 6.28 16 10 N -0.58 -12.52 2.49 -177.56 -0.44 -12.97 16 11 C 0.18 3.13 5.49 -5.20 -0.03 3.11 16 12 C -0.03 -0.46 6.39 -35.63 -0.23 -0.69 16 13 C -0.19 -3.04 9.88 -39.70 -0.39 -3.44 16 14 C -0.21 -2.91 10.91 -39.70 -0.43 -3.35 16 15 C -0.05 -0.63 12.09 29.42 0.36 -0.28 16 16 O -0.18 -2.67 8.17 5.70 0.05 -2.62 16 17 C 0.55 11.86 7.20 -12.33 -0.09 11.77 16 18 O -0.53 -13.49 16.61 5.31 0.09 -13.40 16 19 C -0.10 -1.69 4.90 -104.97 -0.51 -2.20 16 20 C -0.10 -1.43 7.42 -39.19 -0.29 -1.72 16 21 C -0.09 -0.99 9.68 -39.64 -0.38 -1.37 16 22 C -0.11 -1.10 5.34 -104.53 -0.56 -1.66 16 23 C 0.17 1.14 6.67 -5.19 -0.03 1.11 16 24 N -0.37 -3.34 3.68 -63.81 -0.24 -3.58 16 25 C 0.25 1.98 12.63 -90.65 -1.14 0.84 16 26 N -0.55 -5.83 11.19 -15.83 -0.18 -6.01 16 27 C 0.19 2.02 13.03 -91.81 -1.20 0.82 16 28 N -0.31 -3.52 12.55 29.29 0.37 -3.15 16 29 C -0.10 -1.14 9.68 -39.64 -0.38 -1.53 16 30 C -0.08 -1.11 9.75 -39.19 -0.38 -1.49 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.04 1.02 6.69 -51.93 -0.35 0.67 16 33 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 34 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 35 H 0.09 1.46 4.87 -51.93 -0.25 1.21 16 36 H 0.15 2.59 7.75 -52.49 -0.41 2.18 16 37 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.14 2.10 4.15 -52.49 -0.22 1.88 16 40 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.10 0.54 8.08 -51.93 -0.42 0.12 16 42 H 0.11 0.35 8.03 -51.93 -0.42 -0.07 16 43 H 0.22 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.22 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.13 1.97 8.06 -52.48 -0.42 1.54 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -36.83 397.48 -10.17 -47.00 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.37 Total: 4.74 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -6.15 Total: -7.18 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.25 Total: -51.05 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.13 Total: -16.02 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.83 -10.17 -47.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069419677.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.128 kcal (2) G-P(sol) polarization free energy of solvation -36.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds