Wall clock time and date at job start Tue Mar 31 2020 05:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48501 * 109.47140 * 270.00344 * 3 2 1 5 5 H 1.48500 * 109.46898 * 30.00015 * 3 2 1 6 6 H 1.48499 * 109.47159 * 149.99997 * 3 2 1 7 7 C 1.37877 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00036 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47226 * 180.02562 * 9 7 2 11 11 C 1.46495 * 120.00110 * 270.00788 * 10 9 7 12 12 C 1.50697 * 109.47161 * 285.89577 * 11 10 9 13 13 C 1.34515 * 125.78754 * 84.14393 * 12 11 10 14 14 C 1.41387 * 106.84213 * 179.97438 * 13 12 11 15 15 C 1.34518 * 106.83922 * 359.97438 * 14 13 12 16 16 O 1.34300 * 125.79235 * 263.83468 * 12 11 10 17 17 C 1.34777 * 119.99780 * 90.00703 * 10 9 7 18 18 O 1.21558 * 119.99603 * 5.07052 * 17 10 9 19 19 C 1.47839 * 120.00406 * 185.07430 * 17 10 9 20 20 C 1.39576 * 120.14204 * 308.09139 * 19 17 10 21 21 C 1.37956 * 119.85216 * 179.97438 * 20 19 17 22 22 C 1.38361 * 120.14661 * 359.97438 * 21 20 19 23 23 C 1.50702 * 119.85168 * 179.97438 * 22 21 20 24 24 N 1.46498 * 109.47135 * 89.99920 * 23 22 21 25 25 C 1.34432 * 126.82365 * 124.99563 * 24 23 22 26 26 N 1.30831 * 108.07779 * 179.73928 * 25 24 23 27 27 C 1.33234 * 109.83061 * 0.26564 * 26 25 24 28 28 N 1.30720 * 108.94548 * 0.02562 * 27 26 25 29 29 C 1.38358 * 120.28921 * 0.25010 * 22 21 20 30 30 C 1.37952 * 120.14631 * 359.49576 * 29 22 21 31 31 H 0.97000 * 120.00370 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.46600 * 60.00718 * 9 7 2 33 33 H 1.08994 * 109.47856 * 300.01110 * 9 7 2 34 34 H 1.08994 * 109.47668 * 45.89904 * 11 10 9 35 35 H 1.09006 * 109.46839 * 165.90351 * 11 10 9 36 36 H 1.08001 * 126.57797 * 359.96133 * 13 12 11 37 37 H 1.07998 * 126.57817 * 179.97438 * 14 13 12 38 38 H 1.08000 * 125.78548 * 179.97438 * 15 14 13 39 39 H 1.07996 * 120.07577 * 359.95055 * 20 19 17 40 40 H 1.08003 * 119.92822 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47226 * 329.99464 * 23 22 21 42 42 H 1.09006 * 109.46859 * 209.99933 * 23 22 21 43 43 H 1.08002 * 125.96188 * 0.02562 * 25 24 23 44 44 H 1.07998 * 125.52970 * 180.02562 * 27 26 25 45 45 H 1.08002 * 119.92616 * 179.74248 * 29 22 21 46 46 H 1.08007 * 120.07531 * 180.25211 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6793 -4.1693 -1.2692 12 6 1.5849 -4.9920 -1.8990 13 6 0.5853 -4.5176 -2.6639 14 6 -0.2052 -5.6279 -3.0398 15 6 0.3590 -6.7145 -2.4825 16 8 1.4456 -6.3238 -1.7966 17 6 2.6409 -4.1249 1.1667 18 8 2.1774 -3.7261 2.2173 19 6 3.6848 -5.1717 1.1694 20 6 3.5322 -6.3158 0.3846 21 6 4.5103 -7.2886 0.3913 22 6 5.6410 -7.1318 1.1731 23 6 6.7051 -8.1990 1.1758 24 7 7.6874 -7.9116 0.1276 25 6 9.0170 -7.7865 0.2819 26 7 9.5400 -7.5362 -0.8909 27 6 8.5797 -7.4885 -1.8132 28 7 7.4269 -7.7083 -1.2373 29 6 5.7963 -6.0022 1.9569 30 6 4.8282 -5.0195 1.9554 31 1 -0.4851 0.8400 0.0004 32 1 0.6242 -2.5566 -0.8904 33 1 0.6246 -2.5571 0.8895 34 1 2.9558 -3.3571 -1.9414 35 1 3.5485 -4.8008 -1.0854 36 1 0.4184 -3.4864 -2.9381 37 1 -1.0919 -5.6076 -3.6560 38 1 0.0007 -7.7292 -2.5738 39 1 2.6501 -6.4395 -0.2261 40 1 4.3932 -8.1746 -0.2152 41 1 6.2466 -9.1698 0.9878 42 1 7.2024 -8.2138 2.1457 43 1 9.5594 -7.8811 1.2111 44 1 8.7293 -7.2991 -2.8658 45 1 6.6793 -5.8878 2.5681 46 1 4.9525 -4.1363 2.5645 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069419677.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:27 Heat of formation + Delta-G solvation = 95.085383 kcal Electronic energy + Delta-G solvation = -32399.345164 eV Core-core repulsion = 28064.677840 eV Total energy + Delta-G solvation = -4334.667325 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.148 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.54814 -42.88495 -41.38375 -39.61358 -37.09747 -35.63084 -34.86299 -33.93755 -32.38058 -32.12206 -32.02888 -31.51364 -29.62326 -27.83450 -26.88358 -25.29718 -23.89959 -23.53610 -22.75202 -22.65533 -22.22184 -21.62224 -20.65131 -18.91394 -18.65885 -18.22985 -18.03935 -17.59022 -17.19961 -16.86751 -16.68732 -16.31197 -16.15336 -15.73187 -15.67489 -15.49939 -14.97521 -14.88994 -14.56236 -14.44038 -14.40509 -14.11782 -13.80277 -13.66371 -13.63678 -13.58931 -13.28492 -13.11320 -13.02081 -12.69190 -12.56073 -12.49855 -12.28636 -12.01843 -11.83004 -10.98253 -10.93816 -10.84946 -10.70574 -10.67688 -10.56268 -10.00388 -9.91203 -9.76328 -9.45214 -8.27297 -6.42369 -0.21444 0.33398 0.69141 0.81806 1.34451 1.37213 1.44910 1.48338 1.65926 1.70173 2.00114 2.11638 2.26404 2.38328 2.72528 3.02967 3.36548 3.53165 3.63378 3.71798 3.74461 3.93026 3.94713 3.97947 4.12310 4.20064 4.28280 4.31473 4.37102 4.47515 4.54577 4.61661 4.71014 4.86920 4.91644 4.97992 5.01861 5.12310 5.18779 5.22370 5.32955 5.36547 5.41914 5.45472 5.55698 5.58814 5.70786 5.82561 5.98211 6.02391 6.16708 6.46451 6.65416 7.09800 7.22918 7.29922 8.80776 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.008646 B = 0.003009 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3237.610663 B = 9301.944951 C =10791.713761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.263 3.737 10 N -0.588 5.588 11 C 0.185 3.815 12 C -0.047 4.047 13 C -0.202 4.202 14 C -0.228 4.228 15 C -0.029 4.029 16 O -0.181 6.181 17 C 0.543 3.457 18 O -0.584 6.584 19 C -0.128 4.128 20 C -0.104 4.104 21 C -0.081 4.081 22 C -0.092 4.092 23 C 0.171 3.829 24 N -0.378 5.378 25 C 0.261 3.739 26 N -0.583 5.583 27 C 0.185 3.815 28 N -0.343 5.343 29 C -0.091 4.091 30 C -0.092 4.092 31 H 0.268 0.732 32 H 0.032 0.968 33 H -0.003 1.003 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.169 0.831 38 H 0.248 0.752 39 H 0.132 0.868 40 H 0.148 0.852 41 H 0.116 0.884 42 H 0.158 0.842 43 H 0.263 0.737 44 H 0.229 0.771 45 H 0.165 0.835 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.779 -22.442 -2.254 26.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.073 0.927 9 C 0.143 3.857 10 N -0.317 5.317 11 C 0.063 3.937 12 C -0.098 4.098 13 C -0.223 4.223 14 C -0.247 4.247 15 C -0.096 4.096 16 O -0.077 6.077 17 C 0.332 3.668 18 O -0.465 6.465 19 C -0.131 4.131 20 C -0.123 4.123 21 C -0.100 4.100 22 C -0.093 4.093 23 C 0.051 3.949 24 N -0.169 5.169 25 C -0.035 4.035 26 N -0.311 5.311 27 C -0.118 4.118 28 N -0.171 5.171 29 C -0.109 4.109 30 C -0.111 4.111 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.015 0.985 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.153 0.847 37 H 0.186 0.814 38 H 0.264 0.736 39 H 0.150 0.850 40 H 0.166 0.834 41 H 0.134 0.866 42 H 0.176 0.824 43 H 0.279 0.721 44 H 0.245 0.755 45 H 0.182 0.818 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.166 -22.271 -1.943 26.466 hybrid contribution -0.782 1.748 0.001 1.915 sum 13.384 -20.523 -1.942 24.578 Atomic orbital electron populations 1.70056 1.07577 1.28290 1.50511 1.25843 0.95785 1.02980 0.94161 0.85401 0.78288 0.78178 0.78879 1.18753 1.20465 1.19674 1.21652 0.93320 0.91648 1.52004 0.92679 1.18816 0.87738 0.82996 0.96185 1.48181 1.44909 1.33513 1.05108 1.20095 0.92719 0.95826 0.85098 1.22682 1.01987 0.81554 1.03577 1.21886 0.96920 1.00885 1.02583 1.22135 1.03850 0.91849 1.06842 1.24910 0.86899 1.01735 0.96073 1.83915 1.42138 1.22556 1.59139 1.19135 0.82393 0.81886 0.83379 1.90716 1.59924 1.63189 1.32711 1.19967 0.95892 0.95843 1.01444 1.21602 1.00611 0.92819 0.97246 1.21144 0.92560 0.98720 0.97550 1.20176 0.95723 0.96344 0.97040 1.21055 0.87167 0.96939 0.89783 1.50734 1.07682 1.52237 1.06214 1.26962 0.82272 0.94235 1.00018 1.70536 1.34629 1.25870 1.00056 1.26415 0.85266 0.98206 1.01875 1.78046 1.24397 1.25242 0.89445 1.21249 0.98807 0.91906 0.98955 1.21224 0.92753 1.00115 0.97019 0.92276 0.95044 0.98488 0.87626 0.86919 0.84651 0.81388 0.73631 0.85000 0.83442 0.86608 0.82433 0.72145 0.75468 0.81798 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 2 C 0.01 0.69 5.46 84.65 0.46 1.15 16 3 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.55 -32.17 9.39 25.60 0.24 -31.93 16 8 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 9 C 0.26 14.76 5.14 85.63 0.44 15.20 16 10 N -0.59 -27.24 2.49 -833.95 -2.07 -29.32 16 11 C 0.19 6.81 5.49 85.63 0.47 7.28 16 12 C -0.05 -1.62 6.39 24.83 0.16 -1.47 16 13 C -0.20 -6.97 9.88 22.19 0.22 -6.75 16 14 C -0.23 -6.14 10.91 22.19 0.24 -5.90 16 15 C -0.03 -0.67 12.09 66.97 0.81 0.13 16 16 O -0.18 -5.27 8.17 -2.51 -0.02 -5.29 16 17 C 0.54 25.26 7.20 86.78 0.62 25.88 16 18 O -0.58 -32.69 16.61 -3.90 -0.06 -32.75 16 19 C -0.13 -4.46 4.90 -20.09 -0.10 -4.56 16 20 C -0.10 -2.96 7.42 22.53 0.17 -2.80 16 21 C -0.08 -1.68 9.68 22.23 0.22 -1.46 16 22 C -0.09 -1.49 5.34 -19.81 -0.11 -1.60 16 23 C 0.17 1.33 6.67 85.63 0.57 1.90 16 24 N -0.38 -5.14 3.68 -355.80 -1.31 -6.45 16 25 C 0.26 2.99 12.63 180.36 2.28 5.27 16 26 N -0.58 -10.82 11.19 -204.00 -2.28 -13.11 16 27 C 0.19 3.52 13.03 180.77 2.36 5.88 16 28 N -0.34 -7.01 12.55 -61.25 -0.77 -7.78 16 29 C -0.09 -1.71 9.68 22.23 0.22 -1.50 16 30 C -0.09 -2.69 9.75 22.52 0.22 -2.47 16 31 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.03 1.78 6.69 -2.39 -0.02 1.77 16 33 H 0.00 -0.19 7.35 -2.39 -0.02 -0.21 16 34 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 35 H 0.11 3.67 4.87 -2.38 -0.01 3.66 16 36 H 0.14 5.02 7.75 -2.91 -0.02 5.00 16 37 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 38 H 0.25 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.13 3.95 4.15 -2.91 -0.01 3.94 16 40 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.12 0.61 8.08 -2.39 -0.02 0.59 16 42 H 0.16 -0.17 8.03 -2.38 -0.02 -0.19 16 43 H 0.26 0.07 8.06 -2.91 -0.02 0.05 16 44 H 0.23 3.10 8.06 -2.91 -0.02 3.08 16 45 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 46 H 0.12 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -88.62 397.48 6.30 -82.32 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 1.03 Total: 18.97 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 9.48 Total: 2.27 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -6.15 Total: -112.80 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.09 Total: -38.04 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -88.62 6.30 -82.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069419677.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.408 kcal (2) G-P(sol) polarization free energy of solvation -88.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds