Wall clock time and date at job start Tue Mar 31 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00308 * 2 1 4 4 H 1.48502 * 109.46873 * 270.00047 * 3 2 1 5 5 H 1.48493 * 109.47271 * 29.99869 * 3 2 1 6 6 H 1.48502 * 109.46957 * 149.99972 * 3 2 1 7 7 C 1.37883 * 119.99192 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00229 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99375 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.46503 * 119.99310 * 269.99749 * 10 9 7 12 12 C 1.50694 * 109.47048 * 269.99683 * 11 10 9 13 13 C 1.34519 * 125.78895 * 89.72327 * 12 11 10 14 14 C 1.41381 * 106.84404 * 179.88728 * 13 12 11 15 15 C 1.34519 * 106.83792 * 0.37344 * 14 13 12 16 16 O 1.34303 * 108.42263 * 359.76986 * 15 14 13 17 17 C 1.34771 * 120.00203 * 89.99544 * 10 9 7 18 18 O 1.21282 * 120.00221 * 0.02562 * 17 10 9 19 19 C 1.50704 * 119.99916 * 179.97438 * 17 10 9 20 20 C 1.50701 * 109.47125 * 180.02562 * 19 17 10 21 21 C 1.38282 * 119.93332 * 90.00312 * 20 19 17 22 22 C 1.38122 * 120.06286 * 180.25716 * 21 20 19 23 23 C 1.38817 * 119.93409 * 359.48623 * 22 21 20 24 24 N 1.40264 * 120.06538 * 180.26125 * 23 22 21 25 25 C 1.35065 * 127.39102 * 359.93330 * 24 23 22 26 26 N 1.30732 * 107.27778 * 179.84603 * 25 24 23 27 27 N 1.28420 * 110.64472 * 0.44127 * 26 25 24 28 28 N 1.28950 * 110.20404 * 359.72698 * 27 26 25 29 29 C 1.38829 * 119.87191 * 0.49096 * 23 22 21 30 30 C 1.38126 * 119.93049 * 359.76207 * 29 23 22 31 31 H 0.97004 * 119.99642 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.47254 * 60.00241 * 9 7 2 33 33 H 1.09006 * 109.46928 * 300.00022 * 9 7 2 34 34 H 1.08998 * 109.47657 * 30.00196 * 11 10 9 35 35 H 1.09011 * 109.46496 * 150.00329 * 11 10 9 36 36 H 1.08007 * 126.57682 * 0.02562 * 13 12 11 37 37 H 1.07993 * 126.57834 * 180.16063 * 14 13 12 38 38 H 1.07994 * 125.78852 * 179.75408 * 15 14 13 39 39 H 1.09003 * 109.47088 * 60.00285 * 19 17 10 40 40 H 1.09002 * 109.47039 * 300.00415 * 19 17 10 41 41 H 1.08002 * 119.96624 * 359.97165 * 21 20 19 42 42 H 1.07998 * 120.03531 * 179.74058 * 22 21 20 43 43 H 1.08001 * 126.35438 * 359.96765 * 25 24 23 44 44 H 1.07997 * 120.03315 * 179.79219 * 29 23 22 45 45 H 1.07997 * 119.96520 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1943 0.0011 10 7 3.9997 -2.5755 0.0010 11 6 4.2433 -3.2663 1.2698 12 6 5.6664 -3.0297 1.7053 13 6 6.0951 -2.0123 2.4739 14 6 7.4897 -2.1798 2.6349 15 6 7.8312 -3.2850 1.9482 16 8 6.7229 -3.7955 1.3872 17 6 4.2247 -3.2106 -1.1662 18 8 4.0234 -2.6386 -2.2165 19 6 4.7274 -4.6313 -1.1662 20 6 4.8958 -5.1046 -2.5871 21 6 6.1026 -4.9215 -3.2369 22 6 6.2582 -5.3494 -4.5409 23 6 5.2050 -5.9734 -5.1955 24 7 5.3617 -6.4139 -6.5179 25 6 6.4631 -6.3082 -7.2926 26 7 6.1783 -6.8490 -8.4482 27 7 4.9691 -7.2812 -8.4602 28 7 4.4039 -7.0547 -7.3235 29 6 3.9947 -6.1562 -4.5404 30 6 3.8434 -5.7214 -3.2381 31 1 -0.4850 0.8401 0.0004 32 1 3.8745 -0.6803 0.8911 33 1 3.8752 -0.6806 -0.8889 34 1 3.5623 -2.8823 2.0292 35 1 4.0763 -4.3356 1.1391 36 1 5.4896 -1.2207 2.8902 37 1 8.1538 -1.5410 3.1980 38 1 8.8277 -3.6923 1.8623 39 1 4.0096 -5.2708 -0.6526 40 1 5.6876 -4.6770 -0.6522 41 1 6.9228 -4.4393 -2.7258 42 1 7.1996 -5.2025 -5.0494 43 1 7.4048 -5.8618 -7.0090 44 1 3.1726 -6.6383 -5.0484 45 1 2.9021 -5.8630 -2.7281 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069438789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:13 Heat of formation + Delta-G solvation = 142.964830 kcal Electronic energy + Delta-G solvation = -31843.735502 eV Core-core repulsion = 27445.718475 eV Total energy + Delta-G solvation = -4398.017027 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.43577 -42.53710 -40.15194 -38.95982 -35.78429 -35.29060 -32.97650 -32.84668 -32.62842 -31.99205 -31.32788 -30.45733 -28.81010 -27.29294 -25.64185 -24.68945 -24.22544 -22.66936 -22.00232 -21.68576 -21.45299 -20.70064 -18.94412 -18.77916 -17.51324 -16.99118 -16.84815 -16.67516 -16.52833 -16.23505 -15.83988 -15.65938 -15.13059 -14.88264 -14.44226 -14.23206 -14.01020 -13.77837 -13.62850 -13.48412 -13.09291 -12.92617 -12.82923 -12.75916 -12.70703 -12.44593 -12.03527 -11.90948 -11.84112 -11.60716 -11.52615 -11.34591 -11.25933 -11.03898 -10.76983 -10.63361 -10.28557 -9.91096 -9.67803 -9.34512 -9.31861 -8.68454 -8.68087 -8.52192 -8.01982 -6.18206 -4.18076 0.08824 1.03974 1.38848 1.50922 1.68777 1.99958 2.61424 2.90289 3.17939 3.21892 3.27698 3.30004 3.33602 3.75012 3.78443 3.96350 4.30932 4.44881 4.49165 4.58897 4.61915 4.70399 4.87667 5.02382 5.03809 5.04982 5.07864 5.10598 5.16573 5.25970 5.29061 5.40524 5.49770 5.68319 5.71324 5.80707 5.84195 5.92735 5.97348 6.09724 6.14530 6.31447 6.49436 6.52881 6.59373 6.80973 7.05199 7.17517 7.48976 7.96906 8.12355 8.34584 8.71863 8.84639 9.41477 10.94818 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.002637 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.918694 B =10613.601511 C =12867.023340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.217 3.783 10 N -0.588 5.588 11 C 0.190 3.810 12 C -0.028 4.028 13 C -0.195 4.195 14 C -0.214 4.214 15 C -0.048 4.048 16 O -0.177 6.177 17 C 0.514 3.486 18 O -0.524 6.524 19 C -0.113 4.113 20 C -0.039 4.039 21 C -0.082 4.082 22 C -0.116 4.116 23 C 0.114 3.886 24 N -0.317 5.317 25 C 0.222 3.778 26 N -0.333 5.333 27 N -0.040 5.040 28 N -0.077 5.077 29 C -0.095 4.095 30 C -0.081 4.081 31 H 0.266 0.734 32 H 0.031 0.969 33 H 0.037 0.963 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.199 0.801 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.238 0.762 44 H 0.141 0.859 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.842 -12.064 1.580 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.094 0.906 9 C 0.097 3.903 10 N -0.320 5.320 11 C 0.065 3.935 12 C -0.079 4.079 13 C -0.215 4.215 14 C -0.233 4.233 15 C -0.116 4.116 16 O -0.073 6.073 17 C 0.301 3.699 18 O -0.400 6.400 19 C -0.153 4.153 20 C -0.040 4.040 21 C -0.101 4.101 22 C -0.137 4.137 23 C 0.023 3.977 24 N -0.107 5.107 25 C -0.074 4.074 26 N -0.183 5.183 27 N -0.035 5.035 28 N -0.062 5.062 29 C -0.115 4.115 30 C -0.100 4.100 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.138 0.862 35 H 0.107 0.893 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.216 0.784 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.254 0.746 44 H 0.159 0.841 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 16.681 -12.547 -0.195 20.874 hybrid contribution 0.983 1.786 1.055 2.295 sum 17.664 -10.761 0.859 20.702 Atomic orbital electron populations 1.69887 1.06180 1.27113 1.50034 1.24833 0.94732 0.98900 0.94321 0.86898 0.80205 0.83934 0.78963 1.19905 1.20985 1.19011 1.21278 0.88940 0.94901 1.51931 0.90566 1.19712 0.95731 0.77219 0.97622 1.47986 1.64131 1.16208 1.03639 1.19939 0.86131 0.98759 0.88655 1.23295 0.89987 0.93473 1.01179 1.21720 0.95249 1.00723 1.03773 1.21845 0.96084 1.00011 1.05337 1.23957 0.90387 0.97254 0.99961 1.83984 1.15540 1.47968 1.59858 1.20156 0.78231 0.87465 0.84082 1.90721 1.51085 1.67581 1.30607 1.20893 1.04322 0.95741 0.94317 1.19590 0.93463 0.95494 0.95456 1.20846 0.97789 0.98152 0.93312 1.20733 0.97440 0.99995 0.95580 1.17552 0.97274 1.03113 0.79795 1.49087 1.10078 1.39683 1.11888 1.27396 0.94813 0.97981 0.87251 1.74465 1.08591 1.16140 1.19097 1.78072 1.00587 1.12651 1.12201 1.82679 1.12125 1.13671 0.97705 1.20907 0.95541 1.00146 0.94913 1.21022 0.98901 0.96523 0.93546 0.92444 0.95070 0.94486 0.86227 0.89324 0.83302 0.83722 0.78426 0.87692 0.87588 0.84564 0.84893 0.74576 0.84127 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 20.70 27.47 -169.99 -4.67 16.03 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.53 -14.24 9.94 -34.43 -0.34 -14.58 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 C 0.22 4.89 4.23 -5.19 -0.02 4.87 16 10 N -0.59 -10.66 2.44 -176.43 -0.43 -11.09 16 11 C 0.19 2.57 5.74 -5.19 -0.03 2.54 16 12 C -0.03 -0.36 6.85 -35.63 -0.24 -0.61 16 13 C -0.19 -2.53 10.81 -39.70 -0.43 -2.96 16 14 C -0.21 -2.33 10.91 -39.70 -0.43 -2.77 16 15 C -0.05 -0.46 12.09 29.42 0.36 -0.11 16 16 O -0.18 -2.06 9.54 5.69 0.05 -2.01 16 17 C 0.51 9.13 7.66 -10.99 -0.08 9.05 16 18 O -0.52 -11.69 15.61 5.56 0.09 -11.61 16 19 C -0.11 -1.35 4.38 -29.03 -0.13 -1.48 16 20 C -0.04 -0.46 4.37 -104.59 -0.46 -0.92 16 21 C -0.08 -0.84 9.69 -39.61 -0.38 -1.22 16 22 C -0.12 -1.05 9.49 -39.41 -0.37 -1.42 16 23 C 0.11 1.25 6.70 -83.56 -0.56 0.69 16 24 N -0.32 -3.60 3.85 -11.74 -0.05 -3.64 16 25 C 0.22 2.03 12.16 -90.16 -1.10 0.94 16 26 N -0.33 -4.11 12.15 29.64 0.36 -3.75 16 27 N -0.04 -0.57 13.39 60.35 0.81 0.24 16 28 N -0.08 -1.05 13.34 60.35 0.80 -0.25 16 29 C -0.09 -1.10 9.70 -39.40 -0.38 -1.48 16 30 C -0.08 -0.95 9.69 -39.61 -0.38 -1.33 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 33 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 34 H 0.12 1.62 8.07 -51.93 -0.42 1.20 16 35 H 0.09 0.94 6.44 -51.92 -0.33 0.60 16 36 H 0.15 1.91 8.06 -52.48 -0.42 1.49 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.20 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.10 1.03 7.34 -51.93 -0.38 0.65 16 40 H 0.11 1.09 6.86 -51.93 -0.36 0.73 16 41 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.13 0.71 6.88 -52.49 -0.36 0.35 16 43 H 0.24 0.84 7.19 -52.49 -0.38 0.46 16 44 H 0.14 1.56 7.77 -52.49 -0.41 1.15 16 45 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -36.49 393.59 -6.48 -42.97 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.07 Total: 1.71 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -5.09 Total: -8.80 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 2.27 Total: -44.23 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.14 Total: -13.61 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.49 -6.48 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069438789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.939 kcal (2) G-P(sol) polarization free energy of solvation -36.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds