Wall clock time and date at job start Tue Mar 31 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46890 * 111.00239 * 2 1 4 4 C 1.53001 * 109.47161 * 66.04555 * 3 2 1 5 5 C 1.50702 * 109.47259 * 179.97438 * 4 3 2 6 6 O 1.21296 * 119.99702 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00234 * 179.97438 * 5 4 3 8 8 C 1.37096 * 120.00134 * 180.02562 * 7 5 4 9 9 H 1.07996 * 120.00004 * 17.72673 * 8 7 5 10 10 C 1.38949 * 120.00141 * 197.72051 * 8 7 5 11 11 N 1.31414 * 119.99666 * 21.40311 * 10 8 7 12 12 Si 1.86799 * 120.00410 * 201.39815 * 10 8 7 13 13 H 1.48506 * 109.46849 * 90.00076 * 12 10 8 14 14 H 1.48496 * 109.47395 * 210.00217 * 12 10 8 15 15 H 1.48501 * 109.47114 * 330.00575 * 12 10 8 16 16 C 1.46503 * 120.00059 * 0.02562 * 7 5 4 17 17 C 1.47191 * 109.47230 * 84.22887 * 16 7 5 18 18 N 5.83314 * 103.62878 * 64.40782 * 2 1 3 19 19 C 1.46906 * 110.99682 * 236.04291 * 2 1 3 20 20 C 1.50698 * 109.47210 * 293.95287 * 19 2 1 21 21 C 1.38276 * 119.97724 * 269.97930 * 20 19 2 22 22 C 1.38244 * 120.11393 * 180.02562 * 21 20 19 23 23 C 1.38171 * 120.05446 * 359.68129 * 22 21 20 24 24 C 1.38702 * 119.94053 * 0.61590 * 23 22 21 25 25 O 1.35901 * 120.05756 * 179.67846 * 24 23 22 26 26 C 1.42902 * 116.99529 * 359.73164 * 25 24 23 27 27 F 1.39895 * 109.47485 * 59.99724 * 26 25 24 28 28 F 1.39902 * 109.46996 * 299.99233 * 26 25 24 29 29 C 1.38125 * 119.96601 * 90.00103 * 20 19 2 30 30 H 1.08995 * 109.47137 * 183.95337 * 1 2 3 31 31 H 1.09006 * 109.46635 * 303.95453 * 1 2 3 32 32 H 1.08996 * 109.46767 * 63.94977 * 1 2 3 33 33 H 1.09000 * 109.47236 * 186.04496 * 3 2 1 34 34 H 1.09004 * 109.47226 * 306.04643 * 3 2 1 35 35 H 1.08994 * 109.47279 * 299.99735 * 4 3 2 36 36 H 1.09003 * 109.47170 * 60.00455 * 4 3 2 37 37 H 0.97009 * 119.99891 * 180.02562 * 11 10 8 38 38 H 1.08995 * 109.47288 * 204.23164 * 16 7 5 39 39 H 1.09000 * 109.46842 * 324.22819 * 16 7 5 40 40 H 1.08999 * 109.46502 * 173.95614 * 19 2 1 41 41 H 1.08994 * 109.47055 * 53.95788 * 19 2 1 42 42 H 1.08006 * 119.94723 * 0.02562 * 21 20 19 43 43 H 1.08007 * 119.97124 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.02685 * 180.29733 * 23 22 21 45 45 H 1.08997 * 109.47201 * 180.02562 * 26 25 24 46 46 H 1.08004 * 120.03494 * 0.02562 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1722 3.4641 1.3185 6 8 2.7877 3.8774 0.3585 7 7 1.9710 4.2632 2.3850 8 6 2.4624 5.5430 2.3850 9 1 2.7510 6.0106 1.4553 10 6 2.5890 6.2386 3.5812 11 7 2.6515 5.5835 4.7187 12 14 2.6706 8.1048 3.5724 13 1 1.2979 8.6607 3.6820 14 1 3.4864 8.5701 4.7227 15 1 3.2922 8.5672 2.3055 16 6 1.2271 3.7641 3.5443 17 6 2.1389 3.0218 4.4298 18 7 2.8435 2.4488 5.1127 19 6 1.9954 -0.7661 -1.1376 20 6 1.6369 -2.2205 -0.9728 21 6 2.4947 -3.0716 -0.3006 22 6 2.1689 -4.4065 -0.1483 23 6 0.9816 -4.8920 -0.6618 24 6 0.1224 -4.0416 -1.3418 25 8 -1.0430 -4.5180 -1.8536 26 6 -1.3169 -5.9070 -1.6592 27 9 -1.3664 -6.1854 -0.2892 28 9 -0.3058 -6.6694 -2.2539 29 6 0.4519 -2.7023 -1.4937 30 1 -0.3633 -1.0252 0.0708 31 1 -0.3633 0.5740 0.8525 32 1 -0.3633 0.4513 -0.9232 33 1 3.0798 1.3443 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 0.5473 2.0845 1.4265 36 1 2.0659 1.5015 2.1492 37 1 2.7395 6.0692 5.5539 38 1 0.7960 4.6044 4.0885 39 1 0.4296 3.1023 3.2067 40 1 3.0797 -0.6612 -1.1756 41 1 1.5611 -0.3874 -2.0628 42 1 3.4209 -2.6930 0.1060 43 1 2.8408 -5.0694 0.3768 44 1 0.7253 -5.9338 -0.5383 45 1 -2.2749 -6.1557 -2.1157 46 1 -0.2175 -2.0373 -2.0193 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069442157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:15 Heat of formation + Delta-G solvation = -104.852677 kcal Electronic energy + Delta-G solvation = -32267.347475 eV Core-core repulsion = 27407.895088 eV Total energy + Delta-G solvation = -4859.452387 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.149 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.77691 -47.76663 -40.38750 -39.05969 -38.31134 -36.85502 -35.73013 -34.32025 -32.42015 -31.81255 -30.75909 -29.95361 -27.44669 -27.35536 -26.54985 -25.61008 -24.13167 -22.85763 -21.90964 -20.96774 -19.05042 -18.88353 -18.45657 -18.33632 -17.89391 -16.69782 -16.49749 -16.36067 -16.29141 -15.58260 -15.38698 -14.97231 -14.91668 -14.59421 -14.43392 -14.27201 -14.17132 -14.07400 -14.02850 -13.84205 -13.36368 -13.13377 -12.96716 -12.78645 -12.62054 -12.49928 -12.06743 -11.96760 -11.86671 -11.69357 -11.62030 -11.46601 -11.41462 -11.20250 -11.14386 -10.95341 -10.69656 -10.49547 -10.39875 -10.23877 -9.26305 -9.14839 -8.65357 -8.59366 -8.27321 -8.04333 -6.50344 -3.99769 1.01799 1.12556 2.15498 3.03626 3.09912 3.21999 3.26005 3.37806 3.56698 3.80651 3.85425 4.00928 4.04529 4.16586 4.20963 4.49780 4.53248 4.76544 4.86197 4.91205 4.94441 5.08878 5.17554 5.20696 5.24269 5.36637 5.43739 5.47302 5.61907 5.64734 5.70063 5.78598 5.86328 5.90903 6.01127 6.16933 6.19174 6.24373 6.30161 6.35586 6.41093 6.51959 6.81123 7.06606 7.11266 7.47272 7.90614 8.28212 8.77075 9.00432 9.20165 9.74263 10.55793 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.001692 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.042802 B =16542.721446 C =16895.160656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.538 5.538 3 C 0.077 3.923 4 C -0.131 4.131 5 C 0.457 3.543 6 O -0.577 6.577 7 N -0.444 5.444 8 C -0.314 4.314 9 H 0.108 0.892 10 C 0.031 3.969 11 N -0.877 5.877 12 Si 0.927 3.073 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.269 1.269 16 C 0.222 3.778 17 C 0.246 3.754 18 N -0.472 5.472 19 C 0.093 3.907 20 C -0.038 4.038 21 C -0.119 4.119 22 C -0.084 4.084 23 C -0.192 4.192 24 C 0.099 3.901 25 O -0.322 6.322 26 C 0.412 3.588 27 F -0.198 7.198 28 F -0.200 7.200 29 C -0.128 4.128 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.273 0.727 38 H 0.126 0.874 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.181 0.819 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.046 -20.922 -11.742 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.262 5.262 3 C -0.051 4.051 4 C -0.172 4.172 5 C 0.246 3.754 6 O -0.460 6.460 7 N -0.164 5.164 8 C -0.441 4.441 9 H 0.126 0.874 10 C -0.173 4.173 11 N -0.516 5.516 12 Si 0.754 3.246 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.194 1.194 16 C 0.095 3.905 17 C -0.073 4.073 18 N -0.152 5.152 19 C -0.035 4.035 20 C -0.039 4.039 21 C -0.138 4.138 22 C -0.102 4.102 23 C -0.211 4.211 24 C 0.057 3.943 25 O -0.240 6.240 26 C 0.322 3.678 27 F -0.180 7.180 28 F -0.182 7.182 29 C -0.147 4.147 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.144 0.856 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.197 0.803 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.627 -21.619 -10.668 25.959 hybrid contribution -0.329 1.220 -0.389 1.322 sum -9.955 -20.399 -11.057 25.249 Atomic orbital electron populations 1.22540 0.87606 1.02204 1.00857 1.61974 1.08022 1.14488 1.41753 1.21787 1.00821 0.85822 0.96621 1.21576 1.01682 0.94725 0.99211 1.20110 0.83976 0.86403 0.84951 1.90539 1.44558 1.75608 1.35305 1.43649 1.47904 1.12373 1.12499 1.19718 1.42093 0.87160 0.95088 0.87410 1.25282 0.96428 1.00817 0.94755 1.69871 1.47145 1.36075 0.98489 0.85900 0.78292 0.82334 0.78084 1.20170 1.21140 1.19373 1.18716 0.89189 0.97091 0.85533 1.29296 0.94111 0.90460 0.93395 1.80910 1.08934 1.14691 1.10660 1.21056 1.01108 0.88853 0.92466 1.19596 0.93032 0.95497 0.95774 1.21090 1.00521 0.92975 0.99165 1.20966 0.95623 0.95672 0.97913 1.21486 0.96667 1.00020 1.02933 1.18773 0.85248 0.93759 0.96551 1.86607 1.38506 1.24349 1.74510 1.23343 0.91363 0.76803 0.76336 1.93105 1.96866 1.93262 1.34792 1.93099 1.65026 1.76471 1.83579 1.20316 0.98044 0.92169 1.04136 0.91348 0.90826 0.95569 0.90051 0.93836 0.90112 0.89489 0.91639 0.85600 0.89881 0.89300 0.93542 0.85198 0.85385 0.85227 0.80295 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.94 60.07 0.54 0.72 16 2 N -0.54 -6.93 4.75 -244.37 -1.16 -8.10 16 3 C 0.08 1.18 4.25 -3.83 -0.02 1.16 16 4 C -0.13 -2.20 4.24 -27.88 -0.12 -2.32 16 5 C 0.46 10.07 7.57 -10.99 -0.08 9.99 16 6 O -0.58 -14.67 15.63 5.54 0.09 -14.58 16 7 N -0.44 -10.19 2.60 -117.94 -0.31 -10.50 16 8 C -0.31 -7.99 9.32 -14.93 -0.14 -8.13 16 9 H 0.11 2.91 7.39 -52.49 -0.39 2.52 16 10 C 0.03 0.76 4.87 -17.47 -0.08 0.67 16 11 N -0.88 -22.06 9.48 55.50 0.53 -21.53 16 12 Si 0.93 19.54 29.60 -169.99 -5.03 14.51 16 13 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 14 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 C 0.22 4.34 4.91 -6.83 -0.03 4.31 16 17 C 0.25 5.41 12.95 -20.75 -0.27 5.14 16 18 N -0.47 -11.26 18.54 42.17 0.78 -10.47 16 19 C 0.09 1.03 5.12 -4.97 -0.03 1.00 16 20 C -0.04 -0.41 4.88 -104.65 -0.51 -0.93 16 21 C -0.12 -1.25 9.70 -39.56 -0.38 -1.63 16 22 C -0.08 -0.83 10.04 -39.60 -0.40 -1.22 16 23 C -0.19 -1.97 8.26 -39.43 -0.33 -2.30 16 24 C 0.10 1.04 6.48 -39.22 -0.25 0.79 16 25 O -0.32 -2.87 10.43 -19.43 -0.20 -3.07 16 26 C 0.41 2.50 5.98 101.05 0.60 3.10 16 27 F -0.20 -1.58 15.56 2.25 0.04 -1.54 16 28 F -0.20 -1.53 15.60 2.25 0.04 -1.49 16 29 C -0.13 -1.33 7.90 -39.43 -0.31 -1.64 16 30 H 0.07 0.74 6.16 -51.93 -0.32 0.42 16 31 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 1.34 7.89 -51.93 -0.41 0.93 16 34 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.08 1.14 5.74 -51.93 -0.30 0.84 16 36 H 0.09 1.52 7.51 -51.93 -0.39 1.13 16 37 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.13 2.52 6.46 -51.93 -0.34 2.19 16 39 H 0.08 1.23 6.68 -51.93 -0.35 0.89 16 40 H 0.09 0.95 7.87 -51.93 -0.41 0.55 16 41 H 0.05 0.48 8.06 -51.93 -0.42 0.06 16 42 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 43 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 44 H 0.13 1.23 5.10 -52.49 -0.27 0.97 16 45 H 0.18 0.19 8.14 -51.93 -0.42 -0.24 16 46 H 0.13 1.23 8.03 -52.48 -0.42 0.81 16 LS Contribution 390.91 15.07 5.89 5.89 Total: -1.00 -32.32 390.91 -6.74 -39.06 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.58 Total: 3.12 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -1.81 Total: 8.71 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.16 Total: -50.60 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.12 Total: -17.65 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.07 Total: -3.04 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.32 -6.74 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069442157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.795 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds