Wall clock time and date at job start Tue Mar 31 2020 05:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 120.00289 * 2 1 4 4 N 1.34780 * 119.99668 * 179.97438 * 2 1 3 5 5 C 1.46495 * 119.99738 * 179.97438 * 4 2 1 6 6 C 1.50706 * 109.47045 * 179.97438 * 5 4 2 7 7 C 1.38358 * 119.84635 * 89.99986 * 6 5 4 8 8 C 1.37956 * 120.14271 * 179.97438 * 7 6 5 9 9 C 1.39596 * 119.85150 * 0.02854 * 8 7 6 10 10 C 1.47812 * 120.14168 * 180.02562 * 9 8 7 11 11 O 1.21564 * 120.00100 * 330.11419 * 10 9 8 12 12 N 1.34779 * 119.99859 * 150.39616 * 10 9 8 13 13 C 1.46502 * 119.99729 * 6.03054 * 12 10 9 14 14 C 1.50702 * 109.47303 * 98.32717 * 13 12 10 15 15 H 1.08002 * 119.99847 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00091 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00081 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99967 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47086 * 60.00541 * 18 16 14 20 20 H 1.48503 * 109.47030 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47112 * 300.00283 * 18 16 14 22 22 C 1.39840 * 120.00308 * 186.02806 * 12 10 9 23 23 C 1.38886 * 120.07731 * 173.01267 * 22 12 10 24 24 C 1.38106 * 119.93152 * 179.74387 * 23 22 12 25 25 C 1.38286 * 120.07100 * 0.53203 * 24 23 22 26 26 C 1.50700 * 119.92902 * 179.74116 * 25 24 23 27 27 C 1.38287 * 120.14290 * 359.72411 * 25 24 23 28 28 C 1.38110 * 120.07226 * 0.02562 * 27 25 24 29 29 C 1.39583 * 119.70661 * 0.26796 * 9 8 7 30 30 C 1.37956 * 119.85325 * 359.43185 * 29 9 8 31 31 H 1.09005 * 109.47313 * 270.00684 * 1 2 3 32 32 H 1.09005 * 109.46972 * 29.99825 * 1 2 3 33 33 H 1.08988 * 109.47421 * 149.99828 * 1 2 3 34 34 H 0.96999 * 120.00160 * 359.97438 * 4 2 1 35 35 H 1.09009 * 109.47306 * 60.00265 * 5 4 2 36 36 H 1.08998 * 109.47397 * 300.00384 * 5 4 2 37 37 H 1.07997 * 119.93298 * 0.02689 * 7 6 5 38 38 H 1.08003 * 120.07390 * 179.97438 * 8 7 6 39 39 H 1.09006 * 109.47099 * 218.32571 * 13 12 10 40 40 H 1.09000 * 109.47479 * 338.32800 * 13 12 10 41 41 H 0.96994 * 119.99919 * 180.02562 * 17 16 14 42 42 H 1.08011 * 120.03322 * 359.97438 * 23 22 12 43 43 H 1.07997 * 119.96358 * 180.22783 * 24 23 22 44 44 H 1.08999 * 109.46919 * 269.98071 * 26 25 24 45 45 H 1.09002 * 109.46855 * 29.97751 * 26 25 24 46 46 H 1.08997 * 109.46977 * 149.98182 * 26 25 24 47 47 H 1.07997 * 119.96459 * 180.02562 * 27 25 24 48 48 H 1.08003 * 120.03385 * 179.97438 * 28 27 25 49 49 H 1.08005 * 120.07496 * 179.73050 * 29 9 8 50 50 H 1.08001 * 119.92819 * 180.27388 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1481 -2.5882 0.0013 7 6 4.3772 -3.2387 -1.1981 8 6 4.8375 -4.5392 -1.2039 9 6 5.0716 -5.1989 0.0038 10 6 5.5653 -6.5921 0.0050 11 8 5.2740 -7.3410 -0.9071 12 7 6.3339 -7.0338 1.0203 13 6 6.5710 -6.1779 2.1855 14 6 5.6311 -6.5700 3.2964 15 1 4.9278 -7.3763 3.1493 16 6 5.6698 -5.9000 4.5008 17 7 6.5266 -4.9184 4.6800 18 14 4.5053 -6.3864 5.8780 19 1 4.7423 -7.8047 6.2488 20 1 4.7456 -5.5188 7.0590 21 1 3.1020 -6.2220 5.4209 22 6 6.9049 -8.3089 0.9616 23 6 7.8116 -8.7110 1.9338 24 6 8.3697 -9.9729 1.8758 25 6 8.0350 -10.8319 0.8451 26 6 8.6503 -12.2061 0.7818 27 6 7.1365 -10.4328 -0.1274 28 6 6.5709 -9.1741 -0.0724 29 6 4.8325 -4.5387 1.2102 30 6 4.3781 -3.2362 1.2020 31 1 -0.3634 0.0001 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8899 -0.5138 34 1 1.6958 -2.0073 0.0013 35 1 4.0095 -0.6529 0.8895 36 1 4.0088 -0.6540 -0.8904 37 1 4.1960 -2.7271 -2.1318 38 1 5.0155 -5.0461 -2.1409 39 1 7.6009 -6.2987 2.5214 40 1 6.3973 -5.1369 1.9131 41 1 6.5541 -4.4473 5.5274 42 1 8.0772 -8.0387 2.7364 43 1 9.0720 -10.2874 2.6336 44 1 9.5735 -12.1645 0.2037 45 1 8.8693 -12.5530 1.7917 46 1 7.9533 -12.8947 0.3042 47 1 6.8769 -11.1062 -0.9309 48 1 5.8696 -8.8628 -0.8325 49 1 5.0074 -5.0449 2.1481 50 1 4.1969 -2.7228 2.1347 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069457800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:27 Heat of formation + Delta-G solvation = 10.228187 kcal Electronic energy + Delta-G solvation = -32299.019993 eV Core-core repulsion = 28064.213328 eV Total energy + Delta-G solvation = -4234.806665 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.65034 -39.76128 -38.81514 -37.74192 -35.76049 -34.92232 -33.13727 -32.13375 -31.22110 -30.61033 -30.36069 -29.72308 -27.83916 -26.73528 -25.41281 -23.61548 -22.67204 -22.29322 -21.56961 -20.74422 -20.68243 -19.45722 -17.21081 -17.03135 -16.92426 -16.54593 -16.37469 -15.70747 -15.42802 -15.08716 -14.93009 -14.73384 -14.47469 -14.42869 -13.79867 -13.63808 -13.50579 -13.40921 -13.27619 -12.98207 -12.93397 -12.87694 -12.74636 -12.57442 -12.34119 -12.10471 -11.94945 -11.75487 -11.64852 -11.50353 -11.16727 -11.12911 -10.94267 -10.61488 -10.34732 -10.22356 -10.14673 -9.89821 -9.23170 -9.20711 -8.90505 -8.82836 -8.64667 -8.39014 -8.34012 -7.16672 -6.44453 -4.56169 1.01691 1.68597 1.87502 1.99385 2.51397 3.03052 3.11033 3.17076 3.20366 3.37850 3.53556 4.09575 4.15056 4.43898 4.60182 4.74023 4.85052 4.94901 5.00269 5.04755 5.17904 5.23960 5.29426 5.34595 5.39975 5.54600 5.57311 5.64423 5.66777 5.74052 5.79108 5.92608 5.95932 6.07760 6.14691 6.15984 6.22287 6.26081 6.36295 6.47724 6.54744 6.69842 6.75451 6.83255 6.87422 6.96701 7.01494 7.14263 7.21499 7.27056 7.38008 7.49556 7.68791 7.78362 8.00833 8.08299 8.51372 8.66622 9.12376 10.59022 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.002708 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.949761 B =10338.515053 C =12414.191984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.552 6.552 4 N -0.724 5.724 5 C 0.160 3.840 6 C -0.096 4.096 7 C -0.126 4.126 8 C -0.068 4.068 9 C -0.127 4.127 10 C 0.558 3.442 11 O -0.540 6.540 12 N -0.526 5.526 13 C 0.199 3.801 14 C -0.547 4.547 15 H 0.067 0.933 16 C 0.073 3.927 17 N -0.878 5.878 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.167 3.833 23 C -0.138 4.138 24 C -0.103 4.103 25 C -0.131 4.131 26 C -0.104 4.104 27 C -0.107 4.107 28 C -0.177 4.177 29 C -0.093 4.093 30 C -0.112 4.112 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.404 0.596 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.272 0.728 42 H 0.136 0.864 43 H 0.117 0.883 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.114 0.886 48 H 0.180 0.820 49 H 0.205 0.795 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.525 0.367 -7.649 8.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.296 3.704 3 O -0.430 6.430 4 N -0.377 5.377 5 C 0.037 3.963 6 C -0.096 4.096 7 C -0.145 4.145 8 C -0.087 4.087 9 C -0.131 4.131 10 C 0.350 3.650 11 O -0.421 6.421 12 N -0.244 5.244 13 C 0.081 3.919 14 C -0.585 4.585 15 H 0.085 0.915 16 C -0.133 4.133 17 N -0.514 5.514 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.197 1.197 22 C 0.071 3.929 23 C -0.158 4.158 24 C -0.122 4.122 25 C -0.132 4.132 26 C -0.161 4.161 27 C -0.126 4.126 28 C -0.196 4.196 29 C -0.110 4.110 30 C -0.131 4.131 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.238 0.762 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.154 0.846 43 H 0.135 0.865 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.132 0.868 48 H 0.196 0.804 49 H 0.221 0.779 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.177 0.998 -7.944 9.031 hybrid contribution -0.649 -0.645 1.065 1.404 sum -4.826 0.353 -6.879 8.411 Atomic orbital electron populations 1.21880 0.91712 1.04779 1.04843 1.20833 0.90617 0.83426 0.75569 1.90725 1.70856 1.31454 1.49927 1.46207 1.07211 1.08938 1.75294 1.20228 0.79696 0.93268 1.03112 1.20015 1.00604 0.95033 0.93982 1.20824 1.01738 0.94703 0.97234 1.21123 0.96333 0.94035 0.97222 1.19895 1.04489 0.93976 0.94692 1.18476 0.78046 0.87375 0.81081 1.90319 1.58185 1.55666 1.37970 1.45802 1.44526 1.14177 1.19849 1.20590 0.98718 0.91354 0.81268 1.21305 1.20441 1.19304 0.97453 0.91481 1.24959 0.95595 0.94462 0.98256 1.69911 1.34576 1.20930 1.25976 0.86519 0.81112 0.79010 0.80877 1.19743 1.20833 1.19748 1.17999 0.94218 0.85080 0.95594 1.21045 0.97959 0.97269 0.99523 1.20713 1.00149 0.93380 0.97961 1.19794 1.00082 0.96547 0.96738 1.20663 1.00051 0.93568 1.01798 1.20895 0.97299 0.96167 0.98218 1.22774 1.03090 0.93157 1.00570 1.23541 0.91075 0.94771 1.01621 1.21141 0.99528 0.95247 0.97171 0.88810 0.88980 0.90156 0.76157 0.90428 0.90681 0.85918 0.85385 0.93836 0.90754 0.91838 0.84630 0.86531 0.92074 0.92195 0.92266 0.86801 0.80420 0.77884 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.30 36.01 0.37 -0.84 16 2 C 0.51 5.76 7.94 -10.98 -0.09 5.68 16 3 O -0.55 -8.70 17.10 5.55 0.09 -8.61 16 4 N -0.72 -7.54 5.55 -61.47 -0.34 -7.88 16 5 C 0.16 1.90 5.79 -5.19 -0.03 1.87 16 6 C -0.10 -1.26 5.25 -104.53 -0.55 -1.81 16 7 C -0.13 -1.64 9.68 -39.64 -0.38 -2.02 16 8 C -0.07 -1.04 9.60 -39.18 -0.38 -1.42 16 9 C -0.13 -2.32 5.58 -104.97 -0.59 -2.90 16 10 C 0.56 11.43 7.41 -12.34 -0.09 11.33 16 11 O -0.54 -11.40 13.11 5.31 0.07 -11.33 16 12 N -0.53 -11.12 2.70 -115.80 -0.31 -11.44 16 13 C 0.20 4.40 4.07 -5.19 -0.02 4.38 16 14 C -0.55 -12.98 7.40 -34.44 -0.25 -13.24 16 15 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.07 1.74 5.33 -17.82 -0.10 1.65 16 17 N -0.88 -21.60 13.29 55.43 0.74 -20.86 16 18 Si 0.90 19.03 29.54 -169.99 -5.02 14.01 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 C 0.17 3.44 6.43 -83.72 -0.54 2.90 16 23 C -0.14 -2.67 9.22 -39.39 -0.36 -3.03 16 24 C -0.10 -1.73 9.69 -39.61 -0.38 -2.11 16 25 C -0.13 -2.05 5.88 -104.59 -0.62 -2.67 16 26 C -0.10 -1.23 10.01 36.01 0.36 -0.87 16 27 C -0.11 -1.78 9.69 -39.61 -0.38 -2.17 16 28 C -0.18 -3.42 9.06 -39.39 -0.36 -3.78 16 29 C -0.09 -1.71 7.48 -39.18 -0.29 -2.00 16 30 C -0.11 -1.75 9.68 -39.64 -0.38 -2.13 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.40 8.14 -51.94 -0.42 -0.03 16 34 H 0.40 3.46 8.46 -40.82 -0.35 3.11 16 35 H 0.08 0.99 8.08 -51.92 -0.42 0.57 16 36 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.13 1.84 7.92 -52.48 -0.42 1.42 16 39 H 0.04 1.02 6.41 -51.93 -0.33 0.69 16 40 H 0.08 1.65 4.08 -51.95 -0.21 1.44 16 41 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 42 H 0.14 2.74 6.20 -52.48 -0.33 2.42 16 43 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 46 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 47 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 48 H 0.18 3.61 4.52 -56.27 -0.25 3.36 16 49 H 0.21 4.29 3.04 -52.48 -0.16 4.14 16 50 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 411.97 15.07 6.21 6.21 Total: -1.00 -28.45 411.97 -10.28 -38.73 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -6.65 Total: 14.36 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -5.06 Total: -13.19 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.08 Total: -40.18 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: 0.16 Total: -19.93 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -28.45 -10.28 -38.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069457800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.958 kcal (2) G-P(sol) polarization free energy of solvation -28.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds