Wall clock time and date at job start Tue Mar 31 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99730 * 2 1 4 4 H 1.48493 * 109.47398 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47236 * 300.00491 * 3 2 1 6 6 H 1.48507 * 109.47103 * 60.00086 * 3 2 1 7 7 C 1.37873 * 120.00473 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00048 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99896 * 270.00022 * 10 9 7 12 12 C 1.50703 * 109.47045 * 269.99656 * 11 10 9 13 13 C 1.34507 * 125.78535 * 89.71833 * 12 11 10 14 14 C 1.41390 * 106.83847 * 179.88997 * 13 12 11 15 15 C 1.34511 * 106.83678 * 0.37069 * 14 13 12 16 16 O 1.34297 * 125.79035 * 270.02347 * 12 11 10 17 17 C 1.34777 * 120.00271 * 89.99557 * 10 9 7 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 10 9 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 10 9 20 20 C 1.50701 * 109.47064 * 180.02562 * 19 17 10 21 21 C 1.38233 * 120.00099 * 269.72899 * 20 19 17 22 22 C 1.38236 * 119.99664 * 179.74641 * 21 20 19 23 23 C 1.38232 * 120.00296 * 0.54723 * 22 21 20 24 24 C 1.50697 * 120.00042 * 179.72841 * 23 22 21 25 25 F 1.39905 * 109.46743 * 269.97636 * 24 23 22 26 26 F 1.39897 * 109.47594 * 29.97601 * 24 23 22 27 27 F 1.39905 * 109.47225 * 149.98247 * 24 23 22 28 28 C 1.38238 * 119.99892 * 359.70748 * 23 22 21 29 29 C 1.38238 * 120.00072 * 0.02562 * 28 23 22 30 30 H 0.96999 * 120.00725 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47002 * 60.00000 * 9 7 2 32 32 H 1.09004 * 109.46952 * 299.99661 * 9 7 2 33 33 H 1.08997 * 109.47024 * 30.00155 * 11 10 9 34 34 H 1.09000 * 109.46875 * 149.99915 * 11 10 9 35 35 H 1.07998 * 126.58339 * 0.02562 * 13 12 11 36 36 H 1.08001 * 126.57884 * 180.16407 * 14 13 12 37 37 H 1.08004 * 125.78647 * 179.75128 * 15 14 13 38 38 H 1.09002 * 109.47152 * 60.00245 * 19 17 10 39 39 H 1.09001 * 109.46980 * 300.00345 * 19 17 10 40 40 H 1.08003 * 119.99927 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.99448 * 180.27540 * 22 21 20 42 42 H 1.08002 * 119.99952 * 180.02562 * 28 23 22 43 43 H 1.07991 * 120.00062 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 2.6802 -4.1687 -1.2701 12 6 1.7639 -5.2828 -1.7063 13 6 0.6690 -5.1451 -2.4753 14 6 0.1168 -6.4367 -2.6368 15 6 0.9028 -7.2851 -1.9499 16 8 1.8988 -6.5806 -1.3885 17 6 2.6403 -4.1253 1.1658 18 8 2.2452 -3.6651 2.2160 19 6 3.6201 -5.2703 1.1660 20 6 3.9450 -5.6532 2.5869 21 6 5.0070 -5.0545 3.2385 22 6 5.3017 -5.4020 4.5436 23 6 4.5414 -6.3562 5.1934 24 6 4.8665 -6.7394 6.6141 25 9 5.7760 -7.8025 6.6138 26 9 5.4308 -5.6432 7.2754 27 9 3.6947 -7.1283 7.2720 28 6 3.4826 -6.9587 4.5400 29 6 3.1845 -6.6073 3.2367 30 1 -0.4851 0.8400 0.0004 31 1 0.6249 -2.5563 -0.8920 32 1 0.6242 -2.5575 0.8881 33 1 2.6885 -3.3867 -2.0294 34 1 3.6896 -4.5587 -1.1392 35 1 0.2863 -4.2250 -2.8916 36 1 -0.7683 -6.6924 -3.2003 37 1 0.7573 -8.3518 -1.8642 38 1 4.5331 -4.9674 0.6532 39 1 3.1806 -6.1247 0.6513 40 1 5.6043 -4.3127 2.7291 41 1 6.1288 -4.9310 5.0542 42 1 2.8883 -7.7040 5.0478 43 1 2.3576 -7.0783 2.7262 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069485600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:23 Heat of formation + Delta-G solvation = -143.512292 kcal Electronic energy + Delta-G solvation = -32609.263273 eV Core-core repulsion = 27592.381423 eV Total energy + Delta-G solvation = -5016.881850 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.24916 -47.75857 -47.72113 -42.40398 -39.92200 -38.65983 -35.32782 -33.46207 -32.87278 -32.65545 -31.16249 -30.22251 -29.24801 -27.25116 -25.57900 -24.95739 -23.00953 -22.87694 -21.56258 -21.32274 -20.55929 -18.73592 -18.57924 -18.49494 -18.45033 -17.37936 -16.67862 -16.32892 -16.14402 -15.60643 -15.51635 -15.09447 -14.74301 -14.71773 -14.57405 -14.45179 -14.20466 -14.17497 -13.98637 -13.87603 -13.84043 -13.46938 -13.14630 -12.88211 -12.69328 -12.59695 -12.55108 -12.37519 -12.28181 -11.79500 -11.63867 -11.42734 -11.21605 -11.19073 -10.93137 -10.66589 -10.24542 -9.79028 -9.71780 -9.33226 -9.09080 -8.85068 -8.50556 -8.38281 -7.89413 -6.10894 -4.16258 0.86552 1.24889 1.82387 2.57930 2.75592 3.03897 3.25762 3.30157 3.34640 3.37982 3.38513 3.64038 3.94390 3.94563 4.34419 4.39469 4.65735 4.70235 4.77558 4.83787 5.00486 5.16946 5.18409 5.21572 5.25117 5.25210 5.40928 5.49947 5.51634 5.70374 5.80371 5.87093 5.94371 6.09543 6.10768 6.12377 6.22936 6.46084 6.64614 6.70531 6.92581 7.23755 7.36548 7.41196 7.84675 8.14122 8.20925 8.79911 8.94428 9.49359 10.97308 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.007863 B = 0.002959 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.335401 B = 9460.254770 C =12238.222908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.247 3.753 10 N -0.593 5.593 11 C 0.190 3.810 12 C -0.028 4.028 13 C -0.192 4.192 14 C -0.213 4.213 15 C -0.050 4.050 16 O -0.179 6.179 17 C 0.512 3.488 18 O -0.524 6.524 19 C -0.116 4.116 20 C -0.019 4.019 21 C -0.106 4.106 22 C -0.069 4.069 23 C -0.192 4.192 24 C 0.510 3.490 25 F -0.180 7.180 26 F -0.178 7.178 27 F -0.178 7.178 28 C -0.069 4.069 29 C -0.107 4.107 30 H 0.263 0.737 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.198 0.802 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.513 -17.533 0.979 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.129 3.871 10 N -0.325 5.325 11 C 0.065 3.935 12 C -0.080 4.080 13 C -0.212 4.212 14 C -0.232 4.232 15 C -0.118 4.118 16 O -0.075 6.075 17 C 0.298 3.702 18 O -0.400 6.400 19 C -0.156 4.156 20 C -0.019 4.019 21 C -0.124 4.124 22 C -0.087 4.087 23 C -0.194 4.194 24 C 0.456 3.544 25 F -0.162 7.162 26 F -0.159 7.159 27 F -0.160 7.160 28 C -0.088 4.088 29 C -0.125 4.125 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.215 0.785 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.370 -17.245 1.780 19.252 hybrid contribution 0.032 0.892 -0.014 0.893 sum 8.402 -16.353 1.766 18.470 Atomic orbital electron populations 1.69936 1.06015 1.27013 1.50146 1.24926 0.94858 0.99236 0.94951 0.86452 0.79994 0.83389 0.77641 1.19752 1.20946 1.20873 1.21442 0.93402 0.90508 1.51432 0.92258 1.19334 0.87338 0.81800 0.98674 1.48322 1.46230 1.34721 1.03227 1.19908 0.93981 0.90655 0.88915 1.23291 1.00809 0.82740 1.01127 1.21718 0.96890 0.98899 1.03679 1.21842 1.02816 0.93225 1.05326 1.23935 0.89985 0.97793 1.00048 1.83976 1.44868 1.18747 1.59887 1.20110 0.82297 0.83464 0.84302 1.90722 1.57668 1.60990 1.30628 1.20942 1.00880 0.99441 0.94329 1.19635 0.93571 0.93637 0.95099 1.21018 0.97800 0.99396 0.94196 1.20847 0.98362 0.94749 0.94709 1.19874 1.02374 1.04404 0.92703 1.18338 0.74229 0.74529 0.87330 1.93210 1.68117 1.57836 1.96993 1.93186 1.85481 1.54223 1.83045 1.93185 1.48362 1.91230 1.83205 1.20833 0.94868 0.98369 0.94692 1.20981 0.99345 0.97942 0.94211 0.92696 0.94805 0.93782 0.86505 0.89738 0.83217 0.83758 0.78516 0.87943 0.87686 0.84810 0.84844 0.84907 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.53 -14.23 9.39 -34.44 -0.32 -14.55 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.25 6.12 5.16 -5.20 -0.03 6.09 16 10 N -0.59 -11.60 2.44 -176.43 -0.43 -12.03 16 11 C 0.19 2.81 5.74 -5.19 -0.03 2.78 16 12 C -0.03 -0.41 6.85 -35.63 -0.24 -0.65 16 13 C -0.19 -2.79 10.81 -39.70 -0.43 -3.22 16 14 C -0.21 -2.63 10.91 -39.70 -0.43 -3.06 16 15 C -0.05 -0.56 12.09 29.41 0.36 -0.20 16 16 O -0.18 -2.35 9.55 5.74 0.05 -2.30 16 17 C 0.51 9.90 7.66 -10.98 -0.08 9.81 16 18 O -0.52 -12.61 15.61 5.56 0.09 -12.52 16 19 C -0.12 -1.58 4.38 -29.03 -0.13 -1.71 16 20 C -0.02 -0.26 4.37 -104.62 -0.46 -0.72 16 21 C -0.11 -1.37 9.70 -39.58 -0.38 -1.76 16 22 C -0.07 -0.84 9.40 -39.58 -0.37 -1.21 16 23 C -0.19 -2.40 5.45 -104.63 -0.57 -2.97 16 24 C 0.51 6.08 3.36 36.00 0.12 6.20 16 25 F -0.18 -2.09 17.30 2.25 0.04 -2.05 16 26 F -0.18 -2.20 16.46 2.25 0.04 -2.16 16 27 F -0.18 -2.18 16.46 2.25 0.04 -2.15 16 28 C -0.07 -0.84 9.40 -39.58 -0.37 -1.22 16 29 C -0.11 -1.37 9.70 -39.58 -0.38 -1.76 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 33 H 0.12 1.70 8.07 -51.93 -0.42 1.28 16 34 H 0.08 0.98 6.44 -51.93 -0.33 0.65 16 35 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.20 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.10 1.13 7.34 -51.93 -0.38 0.75 16 39 H 0.10 1.28 6.86 -51.93 -0.36 0.92 16 40 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 41 H 0.13 1.37 7.60 -52.48 -0.40 0.97 16 42 H 0.13 1.34 7.60 -52.49 -0.40 0.94 16 43 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 387.64 15.07 5.84 5.84 Total: -1.00 -33.13 387.64 -7.23 -40.36 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.75 Total: 2.40 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -3.86 Total: -6.51 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.31 Total: -37.07 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.14 Total: -14.82 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.11 Total: -6.36 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.13 -7.23 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069485600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.154 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds