Wall clock time and date at job start Tue Mar 31 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99730 * 2 1 4 4 H 1.48493 * 109.47398 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47236 * 300.00491 * 3 2 1 6 6 H 1.48507 * 109.47103 * 60.00086 * 3 2 1 7 7 C 1.37873 * 120.00473 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00048 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99896 * 270.00022 * 10 9 7 12 12 C 1.50703 * 109.47045 * 269.99656 * 11 10 9 13 13 C 1.34507 * 125.78535 * 89.71833 * 12 11 10 14 14 C 1.41390 * 106.83847 * 179.88997 * 13 12 11 15 15 C 1.34511 * 106.83678 * 0.37069 * 14 13 12 16 16 O 1.34297 * 125.79035 * 270.02347 * 12 11 10 17 17 C 1.34777 * 120.00271 * 89.99557 * 10 9 7 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 10 9 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 10 9 20 20 C 1.50701 * 109.47064 * 180.02562 * 19 17 10 21 21 C 1.38233 * 120.00099 * 269.72899 * 20 19 17 22 22 C 1.38236 * 119.99664 * 179.74641 * 21 20 19 23 23 C 1.38232 * 120.00296 * 0.54723 * 22 21 20 24 24 C 1.50697 * 120.00042 * 179.72841 * 23 22 21 25 25 F 1.39905 * 109.46743 * 269.97636 * 24 23 22 26 26 F 1.39897 * 109.47594 * 29.97601 * 24 23 22 27 27 F 1.39905 * 109.47225 * 149.98247 * 24 23 22 28 28 C 1.38238 * 119.99892 * 359.70748 * 23 22 21 29 29 C 1.38238 * 120.00072 * 0.02562 * 28 23 22 30 30 H 0.96999 * 120.00725 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47002 * 60.00000 * 9 7 2 32 32 H 1.09004 * 109.46952 * 299.99661 * 9 7 2 33 33 H 1.08997 * 109.47024 * 30.00155 * 11 10 9 34 34 H 1.09000 * 109.46875 * 149.99915 * 11 10 9 35 35 H 1.07998 * 126.58339 * 0.02562 * 13 12 11 36 36 H 1.08001 * 126.57884 * 180.16407 * 14 13 12 37 37 H 1.08004 * 125.78647 * 179.75128 * 15 14 13 38 38 H 1.09002 * 109.47152 * 60.00245 * 19 17 10 39 39 H 1.09001 * 109.46980 * 300.00345 * 19 17 10 40 40 H 1.08003 * 119.99927 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.99448 * 180.27540 * 22 21 20 42 42 H 1.08002 * 119.99952 * 180.02562 * 28 23 22 43 43 H 1.07991 * 120.00062 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 2.6802 -4.1687 -1.2701 12 6 1.7639 -5.2828 -1.7063 13 6 0.6690 -5.1451 -2.4753 14 6 0.1168 -6.4367 -2.6368 15 6 0.9028 -7.2851 -1.9499 16 8 1.8988 -6.5806 -1.3885 17 6 2.6403 -4.1253 1.1658 18 8 2.2452 -3.6651 2.2160 19 6 3.6201 -5.2703 1.1660 20 6 3.9450 -5.6532 2.5869 21 6 5.0070 -5.0545 3.2385 22 6 5.3017 -5.4020 4.5436 23 6 4.5414 -6.3562 5.1934 24 6 4.8665 -6.7394 6.6141 25 9 5.7760 -7.8025 6.6138 26 9 5.4308 -5.6432 7.2754 27 9 3.6947 -7.1283 7.2720 28 6 3.4826 -6.9587 4.5400 29 6 3.1845 -6.6073 3.2367 30 1 -0.4851 0.8400 0.0004 31 1 0.6249 -2.5563 -0.8920 32 1 0.6242 -2.5575 0.8881 33 1 2.6885 -3.3867 -2.0294 34 1 3.6896 -4.5587 -1.1392 35 1 0.2863 -4.2250 -2.8916 36 1 -0.7683 -6.6924 -3.2003 37 1 0.7573 -8.3518 -1.8642 38 1 4.5331 -4.9674 0.6532 39 1 3.1806 -6.1247 0.6513 40 1 5.6043 -4.3127 2.7291 41 1 6.1288 -4.9310 5.0542 42 1 2.8883 -7.7040 5.0478 43 1 2.3576 -7.0783 2.7262 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069485600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:22 Heat of formation + Delta-G solvation = -160.834709 kcal Electronic energy + Delta-G solvation = -32610.014429 eV Core-core repulsion = 27592.381423 eV Total energy + Delta-G solvation = -5017.633006 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.19907 -48.72088 -48.65892 -43.41425 -41.13564 -39.93084 -36.89913 -34.95219 -34.35125 -33.81051 -32.09833 -31.54030 -30.50045 -28.84889 -26.77737 -26.21993 -24.58247 -23.95303 -22.60525 -22.40960 -21.63082 -20.09179 -19.53691 -19.45972 -19.40473 -18.81509 -18.23640 -17.82482 -17.47262 -16.72642 -16.57839 -16.54635 -15.99871 -15.88317 -15.60732 -15.49336 -15.42372 -15.13282 -15.08956 -14.91018 -14.82679 -14.52765 -14.46468 -14.30902 -13.98967 -13.72393 -13.68884 -13.53229 -13.47068 -13.24706 -13.07495 -12.89749 -12.67998 -12.55719 -12.26787 -12.19888 -12.12460 -11.69610 -10.82682 -10.76178 -10.63657 -10.03176 -9.99135 -9.66144 -9.35113 -8.21315 -6.35314 -0.11983 0.30508 0.78741 1.38499 1.40969 1.52151 1.62892 1.69513 1.76991 2.14907 2.27793 2.40194 2.66032 2.69407 2.99924 3.09883 3.40233 3.60062 3.75200 3.78567 3.88818 3.90577 4.12470 4.18945 4.26348 4.30786 4.40264 4.52990 4.55157 4.64461 4.73120 4.94508 4.95451 5.00907 5.08266 5.15018 5.16060 5.24203 5.26205 5.48271 5.52756 5.64748 5.76956 5.80644 6.06378 6.25033 6.64684 6.75883 7.28474 7.43404 8.86478 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.007863 B = 0.002959 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.335401 B = 9460.254770 C =12238.222908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.286 1.286 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.266 3.734 10 N -0.597 5.597 11 C 0.189 3.811 12 C -0.044 4.044 13 C -0.212 4.212 14 C -0.233 4.233 15 C -0.032 4.032 16 O -0.179 6.179 17 C 0.505 3.495 18 O -0.582 6.582 19 C -0.098 4.098 20 C -0.038 4.038 21 C -0.115 4.115 22 C -0.074 4.074 23 C -0.200 4.200 24 C 0.515 3.485 25 F -0.177 7.177 26 F -0.181 7.181 27 F -0.181 7.181 28 C -0.074 4.074 29 C -0.116 4.116 30 H 0.266 0.734 31 H 0.022 0.978 32 H -0.007 1.007 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.164 0.836 37 H 0.243 0.757 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.330 -19.102 0.374 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.213 1.213 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.328 5.328 11 C 0.066 3.934 12 C -0.095 4.095 13 C -0.233 4.233 14 C -0.251 4.251 15 C -0.099 4.099 16 O -0.075 6.075 17 C 0.294 3.706 18 O -0.462 6.462 19 C -0.137 4.137 20 C -0.039 4.039 21 C -0.133 4.133 22 C -0.092 4.092 23 C -0.201 4.201 24 C 0.461 3.539 25 F -0.158 7.158 26 F -0.162 7.162 27 F -0.162 7.162 28 C -0.092 4.092 29 C -0.134 4.134 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.011 0.989 33 H 0.132 0.868 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.181 0.819 37 H 0.259 0.741 38 H 0.152 0.848 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.219 -18.850 1.133 21.472 hybrid contribution -0.602 1.281 0.175 1.426 sum 9.617 -17.569 1.307 20.071 Atomic orbital electron populations 1.70063 1.07656 1.27988 1.51216 1.25830 0.95684 1.02995 0.94547 0.85401 0.79100 0.78845 0.77676 1.18585 1.19698 1.21268 1.21751 0.93566 0.91548 1.50840 0.92072 1.18702 0.87738 0.83478 0.95556 1.48257 1.45306 1.33687 1.05554 1.20101 0.95871 0.90886 0.86564 1.23020 1.01029 0.83410 1.02012 1.21901 0.97500 0.99714 1.04155 1.22132 1.04080 0.92385 1.06546 1.24812 0.88131 0.99319 0.97628 1.83966 1.45525 1.18057 1.59973 1.21117 0.82279 0.84112 0.83071 1.90688 1.59806 1.63097 1.32592 1.20871 1.00321 0.97275 0.95236 1.19779 0.94316 0.94420 0.95354 1.21254 0.97934 0.99541 0.94591 1.21091 0.98812 0.94647 0.94677 1.20042 1.02597 1.04570 0.92940 1.18243 0.74152 0.74475 0.87060 1.93215 1.67995 1.57671 1.96968 1.93181 1.85516 1.54417 1.83092 1.93181 1.48529 1.91242 1.83240 1.21075 0.94894 0.98619 0.94604 1.21204 0.99524 0.98014 0.94623 0.92557 0.95976 0.98856 0.86805 0.85798 0.84533 0.81878 0.74068 0.84777 0.85775 0.83570 0.83198 0.83164 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.54 -29.67 9.39 25.60 0.24 -29.43 16 8 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 9 C 0.27 13.82 5.16 85.63 0.44 14.27 16 10 N -0.60 -23.65 2.44 -830.50 -2.03 -25.68 16 11 C 0.19 5.40 5.74 85.63 0.49 5.89 16 12 C -0.04 -1.22 6.85 24.83 0.17 -1.05 16 13 C -0.21 -6.18 10.81 22.19 0.24 -5.94 16 14 C -0.23 -5.37 10.91 22.19 0.24 -5.12 16 15 C -0.03 -0.61 12.09 66.97 0.81 0.20 16 16 O -0.18 -4.25 9.55 -2.39 -0.02 -4.27 16 17 C 0.50 19.54 7.66 87.66 0.67 20.21 16 18 O -0.58 -28.89 15.61 -3.02 -0.05 -28.93 16 19 C -0.10 -2.46 4.38 29.10 0.13 -2.34 16 20 C -0.04 -0.99 4.37 -19.86 -0.09 -1.08 16 21 C -0.12 -2.82 9.70 22.27 0.22 -2.60 16 22 C -0.07 -1.72 9.40 22.27 0.21 -1.51 16 23 C -0.20 -4.74 5.45 -19.87 -0.11 -4.85 16 24 C 0.51 11.62 3.36 71.23 0.24 11.86 16 25 F -0.18 -3.84 17.30 44.97 0.78 -3.07 16 26 F -0.18 -4.25 16.46 44.97 0.74 -3.51 16 27 F -0.18 -4.21 16.46 44.97 0.74 -3.47 16 28 C -0.07 -1.70 9.40 22.27 0.21 -1.49 16 29 C -0.12 -2.83 9.70 22.27 0.22 -2.61 16 30 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 32 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 33 H 0.11 3.29 8.07 -2.39 -0.02 3.27 16 34 H 0.12 2.52 6.44 -2.39 -0.02 2.51 16 35 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 36 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.24 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.13 2.50 7.34 -2.39 -0.02 2.49 16 39 H 0.12 2.66 6.86 -2.39 -0.02 2.65 16 40 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 41 H 0.15 2.85 7.60 -2.91 -0.02 2.82 16 42 H 0.15 2.79 7.60 -2.91 -0.02 2.77 16 43 H 0.14 3.04 8.06 -2.92 -0.02 3.01 16 Total: -1.00 -75.22 387.64 8.33 -66.89 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 1.06 Total: 16.01 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 4.79 Total: -4.66 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -1.74 Total: -80.80 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.07 Total: -33.21 kcal Atomic # 9 Polarization: -12.30 SS G_CDS: 2.26 Total: -10.04 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -75.22 8.33 -66.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069485600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.940 kcal (2) G-P(sol) polarization free energy of solvation -75.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds