Wall clock time and date at job start Tue Mar 31 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47127 * 2 1 4 4 O 1.21296 * 119.99919 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99855 * 179.97438 * 3 2 1 6 6 C 1.39956 * 119.99753 * 185.58480 * 5 3 2 7 7 C 1.38994 * 119.99903 * 213.91079 * 6 5 3 8 8 C 1.38214 * 120.23072 * 179.97438 * 7 6 5 9 9 C 1.38019 * 120.21939 * 359.74868 * 8 7 6 10 10 C 1.39596 * 119.99440 * 0.52534 * 9 8 7 11 11 C 1.47822 * 120.11274 * 179.74977 * 10 9 8 12 12 O 1.21566 * 120.00348 * 208.69323 * 11 10 9 13 13 N 1.34780 * 120.00029 * 28.68339 * 11 10 9 14 14 C 1.46499 * 119.99907 * 4.13738 * 13 11 10 15 15 C 1.50703 * 109.46653 * 250.75324 * 14 13 11 16 16 H 1.07994 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99737 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00314 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00201 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47240 * 90.00211 * 19 17 15 21 21 H 1.48498 * 109.47313 * 209.99981 * 19 17 15 22 22 H 1.48498 * 109.46998 * 330.00476 * 19 17 15 23 23 C 1.39851 * 119.99820 * 184.13139 * 13 11 10 24 24 C 1.38916 * 120.06797 * 172.98984 * 23 13 11 25 25 C 1.38091 * 119.92454 * 180.02562 * 24 23 13 26 26 C 1.38315 * 120.07165 * 0.02562 * 25 24 23 27 27 C 1.38264 * 120.14522 * 359.95417 * 26 25 24 28 28 C 1.50695 * 119.96021 * 180.02562 * 27 26 25 29 29 C 1.38131 * 120.07152 * 0.04374 * 27 26 25 30 30 C 1.38594 * 120.00208 * 33.93214 * 6 5 3 31 31 H 1.09001 * 109.47548 * 300.00139 * 1 2 3 32 32 H 1.09005 * 109.46882 * 60.00025 * 1 2 3 33 33 H 1.09006 * 109.46998 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.46994 * 239.99560 * 2 1 3 35 35 H 1.09005 * 109.46882 * 119.99975 * 2 1 3 36 36 H 0.96990 * 120.00299 * 5.59344 * 5 3 2 37 37 H 1.08007 * 119.88735 * 359.97438 * 7 6 5 38 38 H 1.07990 * 119.89073 * 180.02562 * 8 7 6 39 39 H 1.08002 * 120.00567 * 180.25444 * 9 8 7 40 40 H 1.08996 * 109.47148 * 10.75305 * 14 13 11 41 41 H 1.08996 * 109.47146 * 130.75641 * 14 13 11 42 42 H 0.96998 * 120.00415 * 180.02562 * 18 17 15 43 43 H 1.07994 * 120.03991 * 0.02562 * 24 23 13 44 44 H 1.07998 * 119.96066 * 179.97438 * 25 24 23 45 45 H 1.07996 * 119.92289 * 179.97438 * 26 25 24 46 46 H 1.09000 * 109.47112 * 270.02218 * 28 27 26 47 47 H 1.08994 * 109.47294 * 30.02387 * 28 27 26 48 48 H 1.09004 * 109.46822 * 150.02086 * 28 27 26 49 49 H 1.08004 * 120.03309 * 179.69798 * 29 27 26 50 50 H 1.07997 * 120.10772 * 0.02562 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8249 2.9809 0.1185 7 6 4.9869 3.3668 -0.5395 8 6 5.4526 4.6633 -0.4268 9 6 4.7641 5.5849 0.3358 10 6 3.5992 5.2058 1.0053 11 6 2.8628 6.1893 1.8272 12 8 2.2106 5.8160 2.7828 13 7 2.9146 7.5000 1.5173 14 6 3.6254 7.9407 0.3146 15 6 4.8882 8.6604 0.7128 16 1 5.1362 8.7780 1.7573 17 6 5.7264 9.1695 -0.2563 18 7 6.8287 9.7971 0.0912 19 14 5.2971 8.9667 -2.0630 20 1 4.4826 10.1247 -2.5113 21 1 6.5457 8.9001 -2.8640 22 1 4.5216 7.7141 -2.2499 23 6 2.2896 8.4391 2.3439 24 6 2.4629 9.7973 2.1094 25 6 1.8449 10.7221 2.9277 26 6 1.0545 10.2973 3.9803 27 6 0.8797 8.9462 4.2162 28 6 0.0171 8.4880 5.3638 29 6 1.4950 8.0160 3.4013 30 6 3.1296 3.8971 0.8917 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 3.9870 0.9338 -0.0810 37 1 5.5278 2.6512 -1.1410 38 1 6.3557 4.9573 -0.9407 39 1 5.1289 6.5981 0.4182 40 1 3.8783 7.0741 -0.2961 41 1 2.9881 8.6149 -0.2576 42 1 7.4182 10.1556 -0.5906 43 1 3.0802 10.1296 1.2879 44 1 1.9795 11.7781 2.7462 45 1 0.5726 11.0226 4.6191 46 1 0.6303 8.3795 6.2584 47 1 -0.7654 9.2243 5.5468 48 1 -0.4374 7.5287 5.1163 49 1 1.3620 6.9608 3.5891 50 1 2.2270 3.5990 1.4043 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069519664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:31 Heat of formation + Delta-G solvation = 15.242017 kcal Electronic energy + Delta-G solvation = -33111.933440 eV Core-core repulsion = 28877.344190 eV Total energy + Delta-G solvation = -4234.589250 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.83004 -40.20063 -38.52789 -37.53678 -35.77084 -34.72538 -33.09768 -32.81613 -31.89489 -31.19829 -30.06698 -28.95818 -28.07298 -26.30341 -24.99340 -24.07173 -22.80969 -22.27928 -22.00299 -20.57489 -20.28027 -19.20198 -17.53292 -17.34133 -17.19108 -16.56188 -16.15132 -16.01934 -15.86627 -15.21685 -15.00360 -14.52028 -14.38751 -14.19869 -13.96198 -13.76671 -13.42142 -13.36391 -13.22126 -13.07179 -12.82151 -12.59638 -12.54497 -12.46871 -12.20514 -12.02309 -11.89566 -11.76907 -11.52411 -11.45178 -11.28800 -11.05246 -10.98006 -10.68964 -10.50462 -10.42033 -10.04584 -9.88197 -9.79461 -9.26613 -8.91049 -8.83744 -8.62965 -8.06274 -7.93587 -7.14912 -6.39642 -4.43928 1.10034 1.52981 1.99132 2.09165 2.49486 2.89986 3.07813 3.16197 3.19613 3.26106 3.54648 4.09879 4.11416 4.42594 4.52777 4.74239 4.79108 4.84457 4.88014 5.13913 5.19641 5.22515 5.37943 5.48056 5.50563 5.63551 5.65102 5.67503 5.73096 5.76833 5.78372 5.93017 5.98337 6.06942 6.12191 6.15421 6.19366 6.29263 6.34589 6.45958 6.50246 6.53400 6.70949 6.77281 6.81222 7.04799 7.10214 7.17381 7.19846 7.24105 7.26269 7.31312 7.86256 7.90306 8.00805 8.23510 8.63551 8.71397 9.15775 10.70915 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.007396 B = 0.003838 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3784.870337 B = 7293.222808 C =10391.373634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.141 4.141 3 C 0.505 3.495 4 O -0.515 6.515 5 N -0.674 5.674 6 C 0.116 3.884 7 C -0.121 4.121 8 C -0.117 4.117 9 C -0.102 4.102 10 C -0.118 4.118 11 C 0.561 3.439 12 O -0.533 6.533 13 N -0.521 5.521 14 C 0.175 3.825 15 C -0.547 4.547 16 H 0.087 0.913 17 C 0.086 3.914 18 N -0.874 5.874 19 Si 0.859 3.141 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.258 1.258 23 C 0.169 3.831 24 C -0.138 4.138 25 C -0.105 4.105 26 C -0.156 4.156 27 C -0.083 4.083 28 C -0.105 4.105 29 C -0.177 4.177 30 C -0.063 4.063 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.409 0.591 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.189 0.811 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.271 0.729 43 H 0.147 0.853 44 H 0.117 0.883 45 H 0.110 0.890 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.178 0.822 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.310 -15.141 -0.801 16.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.181 4.181 3 C 0.292 3.708 4 O -0.389 6.389 5 N -0.319 5.319 6 C 0.023 3.977 7 C -0.142 4.142 8 C -0.135 4.135 9 C -0.120 4.120 10 C -0.121 4.121 11 C 0.353 3.647 12 O -0.413 6.413 13 N -0.238 5.238 14 C 0.055 3.945 15 C -0.585 4.585 16 H 0.105 0.895 17 C -0.120 4.120 18 N -0.510 5.510 19 Si 0.684 3.316 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.182 1.182 23 C 0.074 3.926 24 C -0.158 4.158 25 C -0.124 4.124 26 C -0.176 4.176 27 C -0.084 4.084 28 C -0.162 4.162 29 C -0.196 4.196 30 C -0.084 4.084 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.244 0.756 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.205 0.795 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.164 0.836 44 H 0.135 0.865 45 H 0.128 0.872 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.195 0.805 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.048 -14.664 -0.439 16.275 hybrid contribution 0.552 -0.168 -1.206 1.337 sum -6.496 -14.832 -1.645 16.275 Atomic orbital electron populations 1.21552 0.92732 1.01688 1.03702 1.21629 0.98951 0.93052 1.04472 1.21018 0.81723 0.92339 0.75688 1.90781 1.54937 1.46317 1.46857 1.43498 1.07759 1.07158 1.73535 1.17448 0.96156 0.84968 0.99139 1.21044 0.96612 0.97163 0.99348 1.21006 1.00337 0.92183 1.00017 1.23039 0.92899 1.03546 0.92500 1.19679 0.97534 0.93765 1.01154 1.18385 0.80347 0.82005 0.84010 1.90341 1.42409 1.79287 1.29306 1.45437 1.48858 1.04691 1.24853 1.20792 0.93135 0.97728 0.82826 1.21214 1.03902 1.36874 0.96485 0.89474 1.24842 0.94488 0.93949 0.98728 1.69876 1.11669 1.35098 1.34317 0.87092 0.78945 0.80137 0.85422 1.19442 1.20383 1.18234 1.17942 0.93900 0.89049 0.91740 1.21299 1.01159 0.90948 1.02440 1.20861 0.97324 0.98887 0.95331 1.20865 1.02252 0.94983 0.99451 1.19758 0.98448 0.93151 0.97029 1.20685 0.98177 1.01195 0.96160 1.22609 0.98238 1.03689 0.95071 1.21052 0.99982 0.91496 0.95833 0.91718 0.91859 0.91955 0.88797 0.88596 0.75568 0.85794 0.85010 0.79507 0.91443 0.95013 0.91918 0.83553 0.86454 0.87222 0.91766 0.92240 0.91860 0.80548 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.16 0.34 -0.78 16 2 C -0.14 -1.00 6.42 -27.88 -0.18 -1.18 16 3 C 0.50 5.98 7.56 -10.99 -0.08 5.89 16 4 O -0.51 -8.61 13.72 5.54 0.08 -8.53 16 5 N -0.67 -7.22 5.34 -9.89 -0.05 -7.27 16 6 C 0.12 1.69 6.26 -83.74 -0.52 1.16 16 7 C -0.12 -1.61 9.95 -39.31 -0.39 -2.00 16 8 C -0.12 -1.82 10.02 -39.67 -0.40 -2.22 16 9 C -0.10 -1.94 7.40 -39.16 -0.29 -2.23 16 10 C -0.12 -2.33 5.47 -105.00 -0.57 -2.91 16 11 C 0.56 12.35 7.40 -12.34 -0.09 12.26 16 12 O -0.53 -12.16 13.08 5.31 0.07 -12.09 16 13 N -0.52 -11.63 2.77 -115.80 -0.32 -11.95 16 14 C 0.18 3.91 3.11 -5.19 -0.02 3.90 16 15 C -0.55 -13.60 6.06 -34.44 -0.21 -13.81 16 16 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 17 C 0.09 2.17 5.47 -17.82 -0.10 2.07 16 18 N -0.87 -23.73 13.96 55.43 0.77 -22.96 16 19 Si 0.86 18.63 27.47 -169.99 -4.67 13.96 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.26 -5.33 6.54 56.52 0.37 -4.96 16 23 C 0.17 3.71 6.38 -83.72 -0.53 3.17 16 24 C -0.14 -2.90 8.82 -39.38 -0.35 -3.25 16 25 C -0.11 -1.91 10.04 -39.61 -0.40 -2.31 16 26 C -0.16 -2.66 9.70 -39.54 -0.38 -3.04 16 27 C -0.08 -1.49 5.88 -104.65 -0.62 -2.10 16 28 C -0.11 -1.49 10.01 36.00 0.36 -1.13 16 29 C -0.18 -3.66 8.70 -39.39 -0.34 -4.00 16 30 C -0.06 -1.13 8.20 -38.98 -0.32 -1.45 16 31 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 32 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.41 2.65 8.82 -40.82 -0.36 2.29 16 37 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.19 4.00 3.73 -52.49 -0.20 3.80 16 40 H 0.07 1.47 3.16 -51.93 -0.16 1.31 16 41 H 0.03 0.71 7.10 -51.93 -0.37 0.34 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 43 H 0.15 3.24 5.76 -52.49 -0.30 2.94 16 44 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 48 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 49 H 0.18 3.84 4.53 -56.24 -0.25 3.58 16 50 H 0.14 2.69 6.32 -52.49 -0.33 2.36 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -31.54 402.09 -9.78 -41.32 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -6.63 Total: 15.42 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -5.09 Total: -13.95 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.40 Total: -42.18 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.15 Total: -20.63 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -4.67 Total: 13.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.54 -9.78 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069519664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.563 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds