Wall clock time and date at job start Tue Mar 31 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47127 * 2 1 4 4 O 1.21296 * 119.99919 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99855 * 179.97438 * 3 2 1 6 6 C 1.39956 * 119.99753 * 185.58480 * 5 3 2 7 7 C 1.38994 * 119.99903 * 213.91079 * 6 5 3 8 8 C 1.38214 * 120.23072 * 179.97438 * 7 6 5 9 9 C 1.38019 * 120.21939 * 359.74868 * 8 7 6 10 10 C 1.39596 * 119.99440 * 0.52534 * 9 8 7 11 11 C 1.47822 * 120.11274 * 179.74977 * 10 9 8 12 12 O 1.21566 * 120.00348 * 208.69323 * 11 10 9 13 13 N 1.34780 * 120.00029 * 28.68339 * 11 10 9 14 14 C 1.46499 * 119.99907 * 4.13738 * 13 11 10 15 15 C 1.50703 * 109.46653 * 250.75324 * 14 13 11 16 16 H 1.07994 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99737 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00314 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00201 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47240 * 90.00211 * 19 17 15 21 21 H 1.48498 * 109.47313 * 209.99981 * 19 17 15 22 22 H 1.48498 * 109.46998 * 330.00476 * 19 17 15 23 23 C 1.39851 * 119.99820 * 184.13139 * 13 11 10 24 24 C 1.38916 * 120.06797 * 172.98984 * 23 13 11 25 25 C 1.38091 * 119.92454 * 180.02562 * 24 23 13 26 26 C 1.38315 * 120.07165 * 0.02562 * 25 24 23 27 27 C 1.38264 * 120.14522 * 359.95417 * 26 25 24 28 28 C 1.50695 * 119.96021 * 180.02562 * 27 26 25 29 29 C 1.38131 * 120.07152 * 0.04374 * 27 26 25 30 30 C 1.38594 * 120.00208 * 33.93214 * 6 5 3 31 31 H 1.09001 * 109.47548 * 300.00139 * 1 2 3 32 32 H 1.09005 * 109.46882 * 60.00025 * 1 2 3 33 33 H 1.09006 * 109.46998 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.46994 * 239.99560 * 2 1 3 35 35 H 1.09005 * 109.46882 * 119.99975 * 2 1 3 36 36 H 0.96990 * 120.00299 * 5.59344 * 5 3 2 37 37 H 1.08007 * 119.88735 * 359.97438 * 7 6 5 38 38 H 1.07990 * 119.89073 * 180.02562 * 8 7 6 39 39 H 1.08002 * 120.00567 * 180.25444 * 9 8 7 40 40 H 1.08996 * 109.47148 * 10.75305 * 14 13 11 41 41 H 1.08996 * 109.47146 * 130.75641 * 14 13 11 42 42 H 0.96998 * 120.00415 * 180.02562 * 18 17 15 43 43 H 1.07994 * 120.03991 * 0.02562 * 24 23 13 44 44 H 1.07998 * 119.96066 * 179.97438 * 25 24 23 45 45 H 1.07996 * 119.92289 * 179.97438 * 26 25 24 46 46 H 1.09000 * 109.47112 * 270.02218 * 28 27 26 47 47 H 1.08994 * 109.47294 * 30.02387 * 28 27 26 48 48 H 1.09004 * 109.46822 * 150.02086 * 28 27 26 49 49 H 1.08004 * 120.03309 * 179.69798 * 29 27 26 50 50 H 1.07997 * 120.10772 * 0.02562 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8249 2.9809 0.1185 7 6 4.9869 3.3668 -0.5395 8 6 5.4526 4.6633 -0.4268 9 6 4.7641 5.5849 0.3358 10 6 3.5992 5.2058 1.0053 11 6 2.8628 6.1893 1.8272 12 8 2.2106 5.8160 2.7828 13 7 2.9146 7.5000 1.5173 14 6 3.6254 7.9407 0.3146 15 6 4.8882 8.6604 0.7128 16 1 5.1362 8.7780 1.7573 17 6 5.7264 9.1695 -0.2563 18 7 6.8287 9.7971 0.0912 19 14 5.2971 8.9667 -2.0630 20 1 4.4826 10.1247 -2.5113 21 1 6.5457 8.9001 -2.8640 22 1 4.5216 7.7141 -2.2499 23 6 2.2896 8.4391 2.3439 24 6 2.4629 9.7973 2.1094 25 6 1.8449 10.7221 2.9277 26 6 1.0545 10.2973 3.9803 27 6 0.8797 8.9462 4.2162 28 6 0.0171 8.4880 5.3638 29 6 1.4950 8.0160 3.4013 30 6 3.1296 3.8971 0.8917 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 3.9870 0.9338 -0.0810 37 1 5.5278 2.6512 -1.1410 38 1 6.3557 4.9573 -0.9407 39 1 5.1289 6.5981 0.4182 40 1 3.8783 7.0741 -0.2961 41 1 2.9881 8.6149 -0.2576 42 1 7.4182 10.1556 -0.5906 43 1 3.0802 10.1296 1.2879 44 1 1.9795 11.7781 2.7462 45 1 0.5726 11.0226 4.6191 46 1 0.6303 8.3795 6.2584 47 1 -0.7654 9.2243 5.5468 48 1 -0.4374 7.5287 5.1163 49 1 1.3620 6.9608 3.5891 50 1 2.2270 3.5990 1.4043 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069519664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:29 Heat of formation + Delta-G solvation = -3.416582 kcal Electronic energy + Delta-G solvation = -33112.742537 eV Core-core repulsion = 28877.344190 eV Total energy + Delta-G solvation = -4235.398347 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.28598 -41.41566 -39.87325 -38.97184 -37.44822 -35.87382 -34.74418 -33.81315 -33.30958 -32.57319 -31.53073 -30.30182 -29.81776 -27.67001 -25.89230 -25.51128 -24.60060 -23.65074 -23.28056 -21.99830 -21.24839 -20.72737 -19.22628 -18.79694 -18.39853 -18.02899 -17.61328 -17.41074 -16.83474 -16.69324 -16.55457 -16.01299 -15.77292 -15.57567 -15.18893 -15.07365 -14.89272 -14.68790 -14.50234 -14.39837 -14.29846 -14.22728 -13.90057 -13.60297 -13.46466 -13.18101 -13.12145 -12.95865 -12.74098 -12.72278 -12.61289 -12.45402 -12.27008 -12.04390 -11.99363 -11.90934 -11.76195 -11.36565 -11.00883 -10.90793 -10.83778 -10.38265 -10.03335 -9.58423 -9.16832 -8.77981 -8.37487 -6.46236 -0.27786 0.23812 0.48573 0.54635 1.34239 1.37965 1.46685 1.50180 1.75180 1.85755 2.08664 2.26963 2.74273 2.92745 2.97743 3.31215 3.69645 3.88737 4.00706 4.07532 4.12054 4.17889 4.26351 4.28853 4.32900 4.40377 4.45990 4.48587 4.54032 4.61161 4.62612 4.69214 4.73343 4.83367 4.85609 4.94553 4.97572 5.03399 5.04623 5.12011 5.23551 5.25878 5.30340 5.37269 5.38974 5.45180 5.52437 5.59424 5.72603 5.74990 5.92933 6.03667 6.29074 6.41818 6.43651 6.59316 6.95905 7.15453 7.16959 8.77248 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.007396 B = 0.003838 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3784.870337 B = 7293.222808 C =10391.373634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.497 3.503 4 O -0.572 6.572 5 N -0.657 5.657 6 C 0.126 3.874 7 C -0.096 4.096 8 C -0.113 4.113 9 C -0.126 4.126 10 C -0.140 4.140 11 C 0.548 3.452 12 O -0.554 6.554 13 N -0.529 5.529 14 C 0.187 3.813 15 C -0.534 4.534 16 H 0.037 0.963 17 C 0.043 3.957 18 N -0.921 5.921 19 Si 0.921 3.079 20 H -0.268 1.268 21 H -0.269 1.269 22 H -0.241 1.241 23 C 0.138 3.862 24 C -0.163 4.163 25 C -0.103 4.103 26 C -0.148 4.148 27 C -0.082 4.082 28 C -0.103 4.103 29 C -0.199 4.199 30 C -0.079 4.079 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.434 0.566 37 H 0.178 0.822 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.081 0.919 41 H 0.030 0.970 42 H 0.274 0.726 43 H 0.125 0.875 44 H 0.145 0.855 45 H 0.152 0.848 46 H 0.076 0.924 47 H 0.089 0.911 48 H 0.060 0.940 49 H 0.163 0.837 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 -17.665 -2.161 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.288 3.712 4 O -0.450 6.450 5 N -0.305 5.305 6 C 0.032 3.968 7 C -0.116 4.116 8 C -0.131 4.131 9 C -0.145 4.145 10 C -0.144 4.144 11 C 0.341 3.659 12 O -0.437 6.437 13 N -0.247 5.247 14 C 0.067 3.933 15 C -0.572 4.572 16 H 0.055 0.945 17 C -0.159 4.159 18 N -0.559 5.559 19 Si 0.743 3.257 20 H -0.193 1.193 21 H -0.193 1.193 22 H -0.164 1.164 23 C 0.044 3.956 24 C -0.183 4.183 25 C -0.121 4.121 26 C -0.166 4.166 27 C -0.083 4.083 28 C -0.159 4.159 29 C -0.219 4.219 30 C -0.100 4.100 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.274 0.726 37 H 0.196 0.804 38 H 0.174 0.826 39 H 0.177 0.823 40 H 0.098 0.902 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.143 0.857 44 H 0.163 0.837 45 H 0.170 0.830 46 H 0.095 0.905 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.179 0.821 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.252 -17.237 -1.794 18.786 hybrid contribution 0.576 0.554 -0.643 1.026 sum -6.677 -16.683 -2.437 18.133 Atomic orbital electron populations 1.21580 0.93873 1.02864 1.01634 1.21716 0.97807 0.89801 1.07525 1.22041 0.81408 0.93849 0.73948 1.90778 1.56377 1.48476 1.49321 1.43455 1.08205 1.06281 1.72572 1.17572 0.95806 0.86053 0.97386 1.21489 0.95403 0.96933 0.97820 1.21316 1.00506 0.92553 0.98750 1.22752 0.93632 1.03318 0.94760 1.19593 0.98337 0.94072 1.02357 1.18958 0.80338 0.82340 0.84243 1.90313 1.43497 1.79635 1.30225 1.45517 1.49022 1.05158 1.24991 1.20630 0.91779 0.97710 0.83215 1.21007 1.05027 1.37045 0.94104 0.94510 1.25532 0.93974 0.93300 1.03115 1.70000 1.13096 1.36791 1.35994 0.86108 0.79160 0.80743 0.79724 1.19313 1.19337 1.16430 1.18305 0.95051 0.89548 0.92724 1.21259 1.02537 0.91277 1.03233 1.21227 0.96362 0.99722 0.94785 1.21294 1.01071 0.95317 0.98940 1.20248 0.97622 0.93300 0.97112 1.20754 0.98419 1.01963 0.94790 1.22611 0.99502 1.03804 0.95960 1.20954 1.00025 0.91697 0.97330 0.94183 0.93684 0.89016 0.85093 0.85717 0.72557 0.80429 0.82579 0.82346 0.90182 0.95174 0.91633 0.85735 0.83729 0.83004 0.90545 0.89187 0.92064 0.82065 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.20 71.98 0.66 -1.42 16 2 C -0.13 -1.39 6.42 29.85 0.19 -1.20 16 3 C 0.50 10.94 7.56 87.66 0.66 11.60 16 4 O -0.57 -19.54 13.72 -3.08 -0.04 -19.58 16 5 N -0.66 -12.09 5.34 -303.59 -1.62 -13.71 16 6 C 0.13 3.44 6.26 38.11 0.24 3.68 16 7 C -0.10 -2.21 9.95 22.45 0.22 -1.98 16 8 C -0.11 -3.30 10.02 22.21 0.22 -3.08 16 9 C -0.13 -4.94 7.40 22.55 0.17 -4.77 16 10 C -0.14 -5.88 5.47 -20.11 -0.11 -5.99 16 11 C 0.55 26.29 7.40 86.78 0.64 26.93 16 12 O -0.55 -27.69 13.08 -3.92 -0.05 -27.74 16 13 N -0.53 -25.70 2.77 -638.54 -1.77 -27.47 16 14 C 0.19 8.91 3.11 85.63 0.27 9.17 16 15 C -0.53 -28.49 6.06 25.60 0.16 -28.34 16 16 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16 17 C 0.04 2.25 5.47 84.65 0.46 2.71 16 18 N -0.92 -52.24 13.96 21.45 0.30 -51.94 16 19 Si 0.92 38.92 27.47 68.60 1.88 40.80 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 23 C 0.14 6.54 6.38 38.17 0.24 6.79 16 24 C -0.16 -7.26 8.82 22.40 0.20 -7.06 16 25 C -0.10 -3.73 10.04 22.25 0.22 -3.51 16 26 C -0.15 -4.79 9.70 22.29 0.22 -4.58 16 27 C -0.08 -2.93 5.88 -19.89 -0.12 -3.04 16 28 C -0.10 -2.74 10.01 71.23 0.71 -2.02 16 29 C -0.20 -8.76 8.70 22.40 0.19 -8.57 16 30 C -0.08 -2.94 8.20 22.66 0.19 -2.75 16 31 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 32 H 0.04 0.81 8.10 -2.38 -0.02 0.80 16 33 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.43 3.52 8.82 -92.72 -0.82 2.70 16 37 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 38 H 0.16 3.78 8.06 -2.92 -0.02 3.76 16 39 H 0.16 7.18 3.73 -2.91 -0.01 7.16 16 40 H 0.08 3.66 3.16 -2.39 -0.01 3.65 16 41 H 0.03 1.42 7.10 -2.39 -0.02 1.41 16 42 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 43 H 0.12 5.99 5.76 -2.91 -0.02 5.98 16 44 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 45 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 46 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.09 1.86 8.08 -2.39 -0.02 1.84 16 48 H 0.06 1.66 8.08 -2.38 -0.02 1.64 16 49 H 0.16 7.61 4.53 -62.41 -0.28 7.32 16 50 H 0.12 4.85 6.32 -2.91 -0.02 4.83 16 Total: -1.00 -79.01 402.09 4.20 -74.82 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.15 Total: 42.26 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 5.64 Total: -17.44 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -3.09 Total: -93.11 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -0.09 Total: -47.32 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.88 Total: 40.80 kcal Total: -79.01 4.20 -74.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069519664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.399 kcal (2) G-P(sol) polarization free energy of solvation -79.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds