Wall clock time and date at job start Tue Mar 31 2020 05:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34528 * 125.20873 * 2 1 4 4 H 0.96989 * 124.62965 * 0.03955 * 3 2 1 5 5 C 1.38099 * 110.73739 * 180.24603 * 3 2 1 6 6 C 1.39111 * 132.99738 * 179.74365 * 5 3 2 7 7 C 1.37828 * 119.95167 * 179.97438 * 6 5 3 8 8 C 1.38694 * 120.63761 * 0.04045 * 7 6 5 9 9 C 1.37843 * 120.25890 * 359.95650 * 8 7 6 10 10 C 1.39181 * 119.67457 * 0.02562 * 9 8 7 11 11 C 1.38230 * 125.20818 * 179.82597 * 2 1 3 12 12 C 1.46203 * 126.93280 * 0.03516 * 11 2 1 13 13 O 1.21544 * 119.99912 * 355.51061 * 12 11 2 14 14 C 1.49169 * 119.99777 * 175.23506 * 12 11 2 15 15 O 1.21382 * 120.00434 * 85.51060 * 14 12 11 16 16 N 1.34781 * 120.00136 * 265.50505 * 14 12 11 17 17 C 1.46504 * 119.99867 * 4.96682 * 16 14 12 18 18 C 1.50696 * 109.46835 * 93.26533 * 17 16 14 19 19 H 1.08000 * 120.00690 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99922 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00207 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00245 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47233 * 59.99526 * 22 20 18 24 24 H 1.48499 * 109.47050 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46650 * 299.99698 * 22 20 18 26 26 C 1.46496 * 120.00086 * 184.96645 * 16 14 12 27 27 C 1.50699 * 109.46850 * 90.00365 * 26 16 14 28 28 C 1.34513 * 125.79582 * 89.71675 * 27 26 16 29 29 C 1.41373 * 106.84675 * 179.88754 * 28 27 26 30 30 C 1.34516 * 106.84111 * 0.36911 * 29 28 27 31 31 O 1.34301 * 108.42144 * 359.77389 * 30 29 28 32 32 H 1.08998 * 109.47245 * 264.56264 * 1 2 3 33 33 H 1.08997 * 109.46747 * 24.56190 * 1 2 3 34 34 H 1.09002 * 109.47235 * 144.56018 * 1 2 3 35 35 H 1.07995 * 120.02531 * 359.97438 * 6 5 3 36 36 H 1.07994 * 119.68030 * 180.02562 * 7 6 5 37 37 H 1.07991 * 119.87196 * 179.97438 * 8 7 6 38 38 H 1.07996 * 120.16058 * 180.02562 * 9 8 7 39 39 H 1.08994 * 109.47206 * 213.26637 * 17 16 14 40 40 H 1.09001 * 109.46694 * 333.26812 * 17 16 14 41 41 H 0.97000 * 120.00610 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.46962 * 209.99809 * 26 16 14 43 43 H 1.08999 * 109.47250 * 330.00086 * 26 16 14 44 44 H 1.08004 * 126.57185 * 0.02562 * 28 27 26 45 45 H 1.08005 * 126.58170 * 180.16460 * 29 28 27 46 46 H 1.08000 * 125.79157 * 179.75286 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2826 1.0992 0.0000 4 1 1.9483 2.0096 0.0006 5 6 3.6198 0.7541 -0.0055 6 6 4.7926 1.5022 -0.0124 7 6 6.0150 0.8654 -0.0163 8 6 6.0905 -0.5195 -0.0144 9 6 4.9395 -1.2779 -0.0076 10 6 3.6988 -0.6472 -0.0032 11 6 2.3040 -1.1294 0.0034 12 6 1.8556 -2.5210 0.0069 13 8 0.6704 -2.7774 0.0894 14 6 2.8523 -3.6260 -0.0969 15 8 3.4011 -4.0442 0.9017 16 7 3.1435 -4.1600 -1.2996 17 6 2.5645 -3.5846 -2.5162 18 6 3.5178 -2.5713 -3.0953 19 1 4.4607 -2.3757 -2.6065 20 6 3.1861 -1.8937 -4.2494 21 7 2.0381 -2.1322 -4.8452 22 14 4.3680 -0.6381 -4.9679 23 1 5.6545 -1.3018 -5.2986 24 1 3.7805 -0.0538 -6.2002 25 1 4.6080 0.4401 -3.9753 26 6 4.0389 -5.3159 -1.3904 27 6 3.2311 -6.5851 -1.3039 28 6 2.6920 -7.2470 -2.3435 29 6 2.0268 -8.3749 -1.8105 30 6 2.1921 -8.3305 -0.4763 31 8 2.9223 -7.2443 -0.1751 32 1 -0.3634 -0.0974 1.0230 33 1 -0.3633 0.9347 -0.4272 34 1 -0.3634 -0.8373 -0.5959 35 1 4.7454 2.5811 -0.0146 36 1 6.9227 1.4504 -0.0212 37 1 7.0548 -1.0056 -0.0179 38 1 5.0001 -2.3561 -0.0057 39 1 2.3891 -4.3762 -3.2446 40 1 1.6199 -3.0978 -2.2738 41 1 1.8045 -1.6553 -5.6569 42 1 4.5721 -5.2887 -2.3407 43 1 4.7563 -5.2852 -0.5703 44 1 2.7570 -6.9710 -3.3856 45 1 1.4864 -9.1261 -2.3675 46 1 1.8033 -9.0466 0.2325 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069566914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:59 Heat of formation + Delta-G solvation = 9.670786 kcal Electronic energy + Delta-G solvation = -33973.747215 eV Core-core repulsion = 29603.083284 eV Total energy + Delta-G solvation = -4370.663931 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.15970 -41.29012 -39.53089 -37.66423 -36.73309 -35.31063 -32.80410 -32.49216 -31.98963 -30.96127 -30.39515 -29.22583 -27.35150 -27.17225 -26.12520 -24.21761 -22.88813 -22.08879 -21.37943 -21.31595 -20.58241 -19.84211 -18.22323 -17.43053 -17.14911 -16.69840 -16.30966 -16.16991 -15.68368 -15.31228 -15.23227 -14.87870 -14.77992 -14.51346 -14.34527 -13.82398 -13.54794 -13.41579 -13.18540 -12.99976 -12.79311 -12.57914 -12.45721 -12.44203 -12.37346 -12.18725 -12.14017 -11.54000 -11.36681 -11.27518 -11.26400 -11.02449 -10.85950 -10.74417 -10.49644 -10.15817 -9.83615 -9.55218 -9.34121 -8.83562 -8.54535 -8.15424 -7.98255 -7.95799 -7.43131 -6.16357 -4.22484 1.14706 1.76687 1.99802 2.09098 2.90096 2.94013 3.11847 3.24872 3.28648 3.30788 3.34511 3.46275 3.82551 4.26268 4.33236 4.75197 4.77748 4.91862 5.07303 5.18080 5.20971 5.27802 5.36694 5.38795 5.41572 5.52443 5.60071 5.64798 5.74404 5.77282 6.00252 6.01630 6.04373 6.13601 6.19151 6.29487 6.31558 6.43749 6.56331 6.66548 6.82020 6.85467 6.90269 6.95593 7.14025 7.33526 7.34893 7.52791 7.53508 7.76896 7.88019 8.01629 8.08010 8.57599 8.85010 9.44325 10.91120 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.008787 B = 0.004382 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.615421 B = 6388.041876 C = 7276.763656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.177 3.823 3 N -0.571 5.571 4 H 0.416 0.584 5 C 0.079 3.921 6 C -0.126 4.126 7 C -0.107 4.107 8 C -0.137 4.137 9 C -0.059 4.059 10 C -0.042 4.042 11 C -0.245 4.245 12 C 0.445 3.555 13 O -0.455 6.455 14 C 0.503 3.497 15 O -0.542 6.542 16 N -0.576 5.576 17 C 0.235 3.765 18 C -0.530 4.530 19 H 0.066 0.934 20 C 0.070 3.930 21 N -0.890 5.890 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.288 1.288 25 H -0.273 1.273 26 C 0.194 3.806 27 C -0.020 4.020 28 C -0.198 4.198 29 C -0.217 4.217 30 C -0.050 4.050 31 O -0.168 6.168 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.042 0.958 40 H 0.038 0.962 41 H 0.264 0.736 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.150 0.850 45 H 0.144 0.856 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 2.530 7.350 7.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.061 3.939 3 N -0.172 5.172 4 H 0.253 0.747 5 C -0.024 4.024 6 C -0.146 4.146 7 C -0.127 4.127 8 C -0.156 4.156 9 C -0.078 4.078 10 C -0.046 4.046 11 C -0.253 4.253 12 C 0.322 3.678 13 O -0.331 6.331 14 C 0.288 3.712 15 O -0.421 6.421 16 N -0.307 5.307 17 C 0.116 3.884 18 C -0.568 4.568 19 H 0.084 0.916 20 C -0.133 4.133 21 N -0.528 5.528 22 Si 0.717 3.283 23 H -0.200 1.200 24 H -0.214 1.214 25 H -0.199 1.199 26 C 0.070 3.930 27 C -0.071 4.071 28 C -0.218 4.218 29 C -0.236 4.236 30 C -0.118 4.118 31 O -0.063 6.063 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.136 0.864 43 H 0.111 0.889 44 H 0.167 0.833 45 H 0.162 0.838 46 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.306 2.445 8.015 8.480 hybrid contribution 0.266 1.046 -1.048 1.504 sum 1.572 3.492 6.966 7.949 Atomic orbital electron populations 1.20727 0.86454 1.04471 1.04155 1.20871 0.93630 0.85207 0.94173 1.41264 1.04628 1.08187 1.63160 0.74688 1.18153 0.83918 0.94187 1.06191 1.19932 0.89785 0.98500 1.06379 1.20707 0.96260 0.94622 1.01067 1.20894 0.97974 0.93649 1.03057 1.20580 0.90228 1.00194 0.96788 1.18740 0.92470 0.91508 1.01887 1.20122 0.91775 0.92212 1.21219 1.20778 0.88174 0.88007 0.70844 1.90579 1.17762 1.86189 1.38569 1.20644 0.82984 0.83514 0.84039 1.90717 1.52135 1.62996 1.36254 1.48342 1.46073 1.28378 1.07910 1.19581 0.94304 0.94243 0.80236 1.21354 1.04335 1.21909 1.09222 0.91582 1.24846 0.95183 0.96731 0.96507 1.69927 1.21530 1.42020 1.19356 0.86671 0.81277 0.81964 0.78429 1.19972 1.21370 1.19875 1.19773 0.90099 0.78234 1.04853 1.23145 1.03587 0.96984 0.83405 1.21677 1.02866 0.96944 1.00273 1.21789 1.06070 1.01283 0.94452 1.23964 0.99743 0.91168 0.96942 1.84095 1.55484 1.32161 1.34575 0.89491 0.91143 0.87786 0.86512 0.85958 0.85955 0.85649 0.93993 0.94416 0.92605 0.86398 0.88861 0.83252 0.83830 0.78662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 9.66 36.01 0.35 -0.99 16 2 C 0.18 2.92 7.16 -81.41 -0.58 2.34 16 3 N -0.57 -8.10 5.93 -6.54 -0.04 -8.14 16 4 H 0.42 4.10 8.96 -40.82 -0.37 3.74 16 5 C 0.08 1.31 7.24 -83.92 -0.61 0.70 16 6 C -0.13 -1.80 10.07 -39.41 -0.40 -2.20 16 7 C -0.11 -1.51 10.01 -39.56 -0.40 -1.91 16 8 C -0.14 -2.15 10.03 -39.56 -0.40 -2.55 16 9 C -0.06 -1.12 9.48 -39.38 -0.37 -1.49 16 10 C -0.04 -0.83 6.19 -104.94 -0.65 -1.48 16 11 C -0.24 -4.92 6.28 -102.89 -0.65 -5.57 16 12 C 0.44 9.87 5.02 -31.84 -0.16 9.71 16 13 O -0.46 -10.32 15.60 5.33 0.08 -10.24 16 14 C 0.50 11.34 5.50 -11.72 -0.06 11.27 16 15 O -0.54 -12.71 16.18 5.47 0.09 -12.62 16 16 N -0.58 -12.45 2.44 -177.06 -0.43 -12.88 16 17 C 0.24 5.68 5.10 -5.19 -0.03 5.65 16 18 C -0.53 -13.37 9.39 -34.44 -0.32 -13.69 16 19 H 0.07 1.66 7.64 -52.49 -0.40 1.26 16 20 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 21 N -0.89 -24.40 13.29 55.43 0.74 -23.67 16 22 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.19 3.61 5.99 -5.20 -0.03 3.58 16 27 C -0.02 -0.36 6.90 -35.63 -0.25 -0.61 16 28 C -0.20 -3.38 10.81 -39.71 -0.43 -3.81 16 29 C -0.22 -3.25 10.91 -39.71 -0.43 -3.68 16 30 C -0.05 -0.74 12.09 29.42 0.36 -0.38 16 31 O -0.17 -3.11 10.65 5.68 0.06 -3.05 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.64 6.85 -51.93 -0.36 1.28 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.13 2.49 6.20 -52.49 -0.33 2.16 16 39 H 0.04 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.04 1.00 6.58 -51.93 -0.34 0.66 16 41 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.12 2.00 8.07 -51.93 -0.42 1.58 16 43 H 0.09 1.67 7.36 -51.93 -0.38 1.29 16 44 H 0.15 2.44 8.06 -52.48 -0.42 2.02 16 45 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 46 H 0.20 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 400.94 15.07 6.04 6.04 Total: -1.00 -33.25 400.94 -9.17 -42.42 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.53 Total: 9.97 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -5.16 Total: -3.37 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.27 Total: -44.69 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: 0.23 Total: -25.91 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.25 -9.17 -42.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069566914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.088 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds