Wall clock time and date at job start Tue Mar 31 2020 05:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00029 * 2 1 4 4 C 1.38784 * 120.02766 * 359.97438 * 3 2 1 5 5 C 1.38159 * 120.05413 * 179.97438 * 4 3 2 6 6 C 1.38202 * 120.10989 * 359.77111 * 5 4 3 7 7 C 1.50693 * 119.97387 * 180.27600 * 6 5 4 8 8 H 1.09004 * 109.47347 * 145.23290 * 7 6 5 9 9 C 1.47198 * 109.47191 * 265.23241 * 7 6 5 10 10 N 6.95891 * 116.75208 * 336.93018 * 2 1 3 11 11 N 1.46505 * 109.47306 * 25.23503 * 7 6 5 12 12 C 1.34774 * 120.00160 * 154.99738 * 11 7 6 13 13 O 1.21551 * 119.99852 * 0.02562 * 12 11 7 14 14 C 1.47883 * 119.99995 * 179.97438 * 12 11 7 15 15 C 1.39918 * 120.02327 * 359.73109 * 14 12 11 16 16 C 1.38338 * 120.35561 * 179.71575 * 15 14 12 17 17 C 1.37757 * 120.41040 * 0.55699 * 16 15 14 18 18 C 1.40751 * 120.03764 * 359.72044 * 17 16 15 19 19 C 1.41439 * 120.17606 * 180.02562 * 18 17 16 20 20 H 1.08009 * 119.99598 * 334.92766 * 19 18 17 21 21 C 1.39934 * 120.00388 * 154.93118 * 19 18 17 22 22 N 1.30827 * 119.99620 * 342.58318 * 21 19 18 23 23 Si 1.86798 * 120.00407 * 162.59027 * 21 19 18 24 24 H 1.48496 * 109.47003 * 59.99457 * 23 21 19 25 25 H 1.48499 * 109.47437 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46982 * 299.99926 * 23 21 19 27 27 C 1.38996 * 120.02211 * 179.97438 * 14 12 11 28 28 C 1.38754 * 120.04958 * 0.50710 * 6 5 4 29 29 O 1.35901 * 120.02465 * 179.74169 * 28 6 5 30 30 C 1.42892 * 116.99797 * 179.72899 * 29 28 6 31 31 C 1.38616 * 120.02506 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.46915 * 300.00080 * 1 2 3 33 33 H 1.09003 * 109.46653 * 59.99941 * 1 2 3 34 34 H 1.08999 * 109.47421 * 179.97438 * 1 2 3 35 35 H 1.08001 * 119.97402 * 0.02878 * 4 3 2 36 36 H 1.07999 * 119.94292 * 180.02562 * 5 4 3 37 37 H 0.96996 * 119.99552 * 334.99931 * 11 7 6 38 38 H 1.07995 * 119.82532 * 359.97125 * 15 14 12 39 39 H 1.07994 * 119.79109 * 180.25984 * 16 15 14 40 40 H 1.07994 * 119.97587 * 179.74255 * 17 16 15 41 41 H 0.97000 * 120.00064 * 179.97438 * 22 21 19 42 42 H 1.07990 * 120.20592 * 359.97438 * 27 14 12 43 43 H 1.08995 * 109.47533 * 60.00224 * 30 29 28 44 44 H 1.09002 * 109.46853 * 180.02562 * 30 29 28 45 45 H 1.09006 * 109.47238 * 299.99618 * 30 29 28 46 46 H 1.08008 * 120.05416 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3752 -0.0005 5 6 1.9173 3.6065 0.0000 6 6 3.2973 3.6821 0.0058 7 6 3.9776 5.0267 0.0127 8 1 4.8925 4.9680 0.6023 9 6 4.3076 5.4166 -1.3678 10 7 4.5614 5.7171 -2.4350 11 7 3.0808 6.0248 0.6010 12 6 3.5896 7.1339 1.1732 13 8 4.7925 7.3063 1.2008 14 6 2.6843 8.1416 1.7665 15 6 1.2993 7.9468 1.7290 16 6 0.4464 8.8821 2.2871 17 6 0.9499 10.0213 2.8758 18 6 2.3401 10.2372 2.9178 19 6 2.8602 11.4055 3.5220 20 1 2.2531 12.2965 3.5856 21 6 4.1612 11.4069 4.0372 22 7 4.7717 10.2746 4.2752 23 14 5.0262 13.0256 4.3854 24 1 4.2445 13.8000 5.3825 25 1 6.3840 12.7557 4.9228 26 1 5.1374 13.8078 3.1280 27 6 3.2086 9.2853 2.3572 28 6 4.0568 2.5209 0.0006 29 8 5.4137 2.5959 0.0010 30 6 6.1316 1.3604 0.0014 31 6 3.4302 1.2840 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 0.2121 2.3187 -0.0005 36 1 1.3278 4.5114 0.0000 37 1 2.1209 5.8873 0.5786 38 1 0.8940 7.0595 1.2656 39 1 -0.6210 8.7205 2.2567 40 1 0.2774 10.7488 3.3056 41 1 5.6737 10.2756 4.6320 42 1 4.2768 9.4415 2.3852 43 1 5.8703 0.7879 -0.8885 44 1 7.2027 1.5626 0.0022 45 1 5.8697 0.7882 0.8915 46 1 4.0197 0.3790 -0.0014 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069582485.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:48 Heat of formation + Delta-G solvation = -45.482457 kcal Electronic energy + Delta-G solvation = -31573.428695 eV Core-core repulsion = 27200.373141 eV Total energy + Delta-G solvation = -4373.055555 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.92500 -40.98410 -39.99053 -39.03611 -38.23708 -37.31282 -35.84498 -35.47796 -32.75195 -31.61139 -31.39808 -31.20861 -28.82243 -28.12539 -27.50353 -27.03361 -24.50267 -23.17369 -22.87724 -22.73529 -21.37475 -19.93695 -19.57544 -19.28763 -18.14803 -18.02247 -17.38029 -17.03489 -16.95810 -16.88552 -16.50716 -16.41115 -16.11372 -15.84370 -15.71683 -15.46683 -15.10677 -14.86100 -14.56444 -14.37777 -14.23155 -14.15178 -14.08361 -13.66123 -13.45813 -13.40145 -13.12455 -12.93134 -12.87265 -12.79126 -12.51208 -12.40939 -12.27450 -12.17918 -11.92905 -11.90961 -11.62302 -11.48962 -11.05031 -10.91554 -10.64825 -9.67429 -9.47913 -9.35701 -9.14194 -8.64446 -6.35593 0.14191 0.29946 0.35551 1.03919 1.24485 1.37439 1.48596 1.51255 1.55104 2.01180 2.12970 2.20185 2.22848 2.40617 2.49814 2.78650 3.02375 3.50973 3.66732 3.72460 3.91383 4.01012 4.13607 4.21551 4.21719 4.40617 4.43910 4.46545 4.47760 4.54243 4.57917 4.62261 4.76411 4.82823 4.90470 4.92541 5.05339 5.10792 5.21107 5.23271 5.32396 5.35429 5.46033 5.53718 5.86432 5.93906 6.07825 6.20459 6.29106 6.30815 6.38314 6.41933 6.64103 6.90365 6.96797 7.14634 8.32201 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.002307 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.247508 B =12132.418767 C =13270.497190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.328 6.328 3 C 0.173 3.827 4 C -0.233 4.233 5 C -0.025 4.025 6 C -0.184 4.184 7 C 0.310 3.690 8 H 0.128 0.872 9 C 0.220 3.780 10 N -0.457 5.457 11 N -0.702 5.702 12 C 0.569 3.431 13 O -0.574 6.574 14 C -0.137 4.137 15 C -0.193 4.193 16 C -0.094 4.094 17 C -0.214 4.214 18 C 0.066 3.934 19 C -0.498 4.498 20 H 0.083 0.917 21 C 0.030 3.970 22 N -0.824 5.824 23 Si 0.979 3.021 24 H -0.252 1.252 25 H -0.273 1.273 26 H -0.263 1.263 27 C -0.129 4.129 28 C 0.181 3.819 29 O -0.330 6.330 30 C 0.016 3.984 31 C -0.246 4.246 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.420 0.580 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.108 0.892 41 H 0.286 0.714 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.115 0.885 45 H 0.073 0.927 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.426 -23.043 -5.848 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.126 3.874 4 C -0.252 4.252 5 C -0.043 4.043 6 C -0.187 4.187 7 C 0.201 3.799 8 H 0.145 0.855 9 C -0.099 4.099 10 N -0.134 5.134 11 N -0.360 5.360 12 C 0.359 3.641 13 O -0.453 6.453 14 C -0.141 4.141 15 C -0.213 4.213 16 C -0.112 4.112 17 C -0.234 4.234 18 C 0.064 3.936 19 C -0.527 4.527 20 H 0.101 0.899 21 C -0.185 4.185 22 N -0.449 5.449 23 Si 0.800 3.200 24 H -0.176 1.176 25 H -0.197 1.197 26 H -0.188 1.188 27 C -0.149 4.149 28 C 0.134 3.866 29 O -0.243 6.243 30 C -0.078 4.078 31 C -0.265 4.265 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.182 0.818 36 H 0.172 0.828 37 H 0.263 0.737 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.126 0.874 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.088 0.912 44 H 0.133 0.867 45 H 0.092 0.908 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.779 -22.618 -7.313 24.719 hybrid contribution 0.320 0.628 0.675 0.976 sum -6.458 -21.990 -6.638 23.861 Atomic orbital electron populations 1.23444 0.75845 1.05852 1.02829 1.86060 1.23928 1.26329 1.87741 1.18885 0.91605 0.85048 0.91825 1.21380 1.01858 0.90727 1.11229 1.20765 0.91555 0.99147 0.92874 1.18582 0.94121 0.89632 1.16375 1.16492 0.95928 0.85646 0.81852 0.85507 1.30036 0.92385 0.92321 0.95177 1.81146 1.09574 1.08868 1.13843 1.45780 1.11047 1.20236 1.58894 1.18860 0.87642 0.81429 0.76135 1.90719 1.17323 1.77783 1.59489 1.19623 0.94383 0.95692 1.04367 1.20890 0.90418 1.01962 1.08001 1.20943 0.99702 0.93430 0.97106 1.21435 0.94327 1.00045 1.07561 1.17932 0.92365 0.92940 0.90362 1.19827 0.99277 0.98796 1.34826 0.89868 1.26798 0.97727 1.01192 0.92759 1.69868 1.13820 1.29523 1.31711 0.85294 0.77499 0.77678 0.79565 1.17578 1.19730 1.18770 1.21450 0.99666 0.94882 0.98928 1.18420 0.82922 0.92438 0.92809 1.86129 1.15011 1.35404 1.87764 1.23425 0.97339 0.84198 1.02834 1.20469 0.93364 0.97237 1.15461 0.91142 0.91248 0.86274 0.81809 0.82824 0.73740 0.84008 0.84008 0.87373 0.90316 0.88340 0.91210 0.86674 0.90844 0.82705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.72 10.49 -92.42 -0.97 -5.69 16 3 C 0.17 2.85 6.68 22.49 0.15 3.00 16 4 C -0.23 -3.32 9.04 22.38 0.20 -3.12 16 5 C -0.03 -0.43 9.22 22.24 0.21 -0.22 16 6 C -0.18 -4.17 5.03 -19.75 -0.10 -4.27 16 7 C 0.31 8.98 2.35 42.44 0.10 9.08 16 8 H 0.13 4.08 7.12 -2.38 -0.02 4.06 16 9 C 0.22 7.38 14.92 89.43 1.33 8.71 16 10 N -0.46 -17.03 18.55 20.02 0.37 -16.66 16 11 N -0.70 -21.29 4.91 -457.70 -2.25 -23.54 16 12 C 0.57 24.01 7.72 86.80 0.67 24.68 16 13 O -0.57 -29.01 16.00 -3.88 -0.06 -29.08 16 14 C -0.14 -6.22 5.87 -20.13 -0.12 -6.34 16 15 C -0.19 -7.00 9.55 22.70 0.22 -6.78 16 16 C -0.09 -3.47 10.01 22.18 0.22 -3.25 16 17 C -0.21 -9.63 9.78 22.77 0.22 -9.40 16 18 C 0.07 3.53 5.57 -21.32 -0.12 3.41 16 19 C -0.50 -26.86 9.05 23.47 0.21 -26.65 16 20 H 0.08 4.23 7.90 -2.91 -0.02 4.21 16 21 C 0.03 1.58 5.14 85.25 0.44 2.02 16 22 N -0.82 -45.62 10.97 21.82 0.24 -45.38 16 23 Si 0.98 39.75 29.59 68.60 2.03 41.78 16 24 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 25 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 27 C -0.13 -7.00 8.23 23.01 0.19 -6.81 16 28 C 0.18 3.90 6.66 22.49 0.15 4.05 16 29 O -0.33 -7.26 9.63 -92.43 -0.89 -8.15 16 30 C 0.02 0.21 9.81 113.37 1.11 1.32 16 31 C -0.25 -4.39 8.97 22.46 0.20 -4.18 16 32 H 0.07 0.33 7.66 -2.39 -0.02 0.32 16 33 H 0.07 0.32 7.66 -2.39 -0.02 0.30 16 34 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.16 1.33 6.29 -2.91 -0.02 1.31 16 36 H 0.15 1.95 6.08 -2.91 -0.02 1.93 16 37 H 0.42 9.59 4.23 -92.71 -0.39 9.20 16 38 H 0.14 3.58 6.38 -2.91 -0.02 3.57 16 39 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 40 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.29 14.69 8.30 -92.71 -0.77 13.92 16 42 H 0.10 6.01 5.76 -2.92 -0.02 5.99 16 43 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 44 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.07 0.75 7.66 -2.38 -0.02 0.73 16 46 H 0.16 2.18 6.30 -2.91 -0.02 2.16 16 Total: -1.00 -76.27 396.26 5.54 -70.72 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.67 Total: 29.53 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 6.40 Total: -13.54 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -1.64 Total: -85.58 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.92 Total: -42.92 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -76.27 5.54 -70.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069582485.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.242 kcal (2) G-P(sol) polarization free energy of solvation -76.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds