Wall clock time and date at job start Tue Mar 31 2020 06:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35739 * 116.99960 * 2 1 4 4 C 1.38904 * 119.61343 * 179.72682 * 3 2 1 5 5 C 1.38322 * 119.17917 * 179.73129 * 4 3 2 6 6 C 1.39353 * 118.42741 * 0.52829 * 5 4 3 7 7 N 1.40368 * 120.41988 * 179.71130 * 6 5 4 8 8 C 1.33878 * 122.76104 * 292.57400 * 7 6 5 9 9 O 1.21232 * 125.39491 * 359.97438 * 8 7 6 10 10 C 1.51319 * 109.20904 * 179.84198 * 8 7 6 11 11 C 1.54232 * 103.54946 * 0.38855 * 10 8 7 12 12 H 1.08998 * 110.60381 * 118.29579 * 11 10 8 13 13 N 1.46500 * 110.60343 * 241.25848 * 11 10 8 14 14 C 1.38862 * 120.00039 * 200.58924 * 13 11 10 15 15 C 1.39566 * 119.84178 * 359.72838 * 14 13 11 16 16 C 1.36338 * 120.16147 * 179.76116 * 15 14 13 17 17 C 1.40883 * 119.83534 * 0.48518 * 16 15 14 18 18 C 1.41138 * 120.15735 * 179.78827 * 17 16 15 19 19 H 1.08001 * 119.99652 * 28.40980 * 18 17 16 20 20 C 1.39869 * 120.00273 * 208.41253 * 18 17 16 21 21 N 1.30906 * 119.99564 * 13.39695 * 20 18 17 22 22 Si 1.86797 * 119.99981 * 193.39789 * 20 18 17 23 23 H 1.48492 * 109.47253 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47144 * 120.00152 * 22 20 18 25 25 H 1.48503 * 109.46694 * 239.99663 * 22 20 18 26 26 C 1.40884 * 119.69010 * 359.76779 * 17 16 15 27 27 C 1.36337 * 119.83620 * 359.97438 * 26 17 16 28 28 C 1.33875 * 122.76736 * 112.86408 * 7 6 5 29 29 O 1.21233 * 125.38914 * 0.02562 * 28 7 6 30 30 C 1.38624 * 119.15783 * 359.73253 * 6 5 4 31 31 N 1.31930 * 120.74668 * 359.97438 * 30 6 5 32 32 H 1.08999 * 109.46838 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47159 * 300.00381 * 1 2 3 34 34 H 1.09001 * 109.46669 * 60.00475 * 1 2 3 35 35 H 1.08001 * 120.41789 * 359.97438 * 4 3 2 36 36 H 1.08000 * 120.78709 * 180.26119 * 5 4 3 37 37 H 1.08994 * 110.79561 * 241.78181 * 10 8 7 38 38 H 1.08999 * 110.54847 * 118.87394 * 10 8 7 39 39 H 0.97005 * 120.00122 * 20.58731 * 13 11 10 40 40 H 1.08001 * 119.91795 * 359.97438 * 15 14 13 41 41 H 1.07998 * 120.08374 * 180.23062 * 16 15 14 42 42 H 0.96999 * 119.99593 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.08562 * 180.02562 * 26 17 16 44 44 H 1.08007 * 119.92399 * 179.97438 * 27 26 17 45 45 H 1.08000 * 119.62182 * 180.02562 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4328 1.2728 0.0058 5 6 4.0515 2.5100 0.0000 6 6 3.2521 3.6514 0.0000 7 7 3.8358 4.9279 0.0004 8 6 4.5298 5.4069 1.0403 9 8 4.7343 4.8170 2.0795 10 6 5.0212 6.7998 0.7117 11 6 4.4766 7.0493 -0.7095 12 1 3.7925 7.8978 -0.7147 13 7 5.5767 7.2664 -1.6524 14 6 5.3409 7.9164 -2.8566 15 6 4.0536 8.3564 -3.1679 16 6 3.8157 8.9996 -4.3463 17 6 4.8713 9.2106 -5.2551 18 6 4.6318 9.8717 -6.4789 19 1 3.8348 10.5967 -6.5540 20 6 5.4265 9.5879 -7.5944 21 7 6.2095 8.5389 -7.5902 22 14 5.3703 10.7057 -9.0899 23 1 4.4122 11.8133 -8.8443 24 1 6.7225 11.2665 -9.3398 25 1 4.9313 9.9256 -10.2747 26 6 6.1672 8.7590 -4.9365 27 6 6.3914 8.1220 -3.7522 28 6 3.7397 5.7689 -1.0368 29 8 3.1545 5.5409 -2.0737 30 6 1.8730 3.5102 -0.0001 31 7 1.3176 2.3135 -0.0006 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 4.0216 0.3674 0.0106 36 1 5.1285 2.5894 0.0001 37 1 6.1105 6.8372 0.7172 38 1 4.6100 7.5259 1.4130 39 1 6.4698 6.9561 -1.4354 40 1 3.2445 8.1900 -2.4721 41 1 2.8197 9.3428 -4.5842 42 1 6.7609 8.3423 -8.3636 43 1 6.9811 8.9177 -5.6284 44 1 7.3843 7.7748 -3.5067 45 1 1.2463 4.3897 -0.0006 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069587344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:23 Heat of formation + Delta-G solvation = -14.045899 kcal Electronic energy + Delta-G solvation = -31809.441448 eV Core-core repulsion = 27372.323174 eV Total energy + Delta-G solvation = -4437.118274 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.45460 -40.72598 -38.81151 -38.30690 -37.81298 -36.09788 -35.36882 -33.51694 -32.76749 -31.77699 -29.85432 -29.39738 -28.29952 -27.47019 -25.94524 -24.51032 -23.96691 -23.62295 -22.52338 -20.80899 -20.66011 -19.93426 -18.79433 -18.07166 -17.82235 -17.23675 -16.84710 -16.62078 -16.29770 -15.96567 -15.55574 -15.28811 -14.95974 -14.82466 -14.59849 -14.24299 -14.08257 -13.93752 -13.79914 -13.70032 -13.31595 -13.18516 -12.75863 -12.49836 -12.31654 -12.18449 -11.99458 -11.76788 -11.60627 -11.48514 -11.14248 -11.01044 -10.82727 -10.71107 -10.62458 -10.39352 -10.16390 -9.79545 -9.69949 -9.39319 -9.34067 -8.81163 -8.66505 -7.55266 -6.67972 -6.52398 -4.13484 0.65937 0.82543 1.35397 2.16907 2.47136 2.74706 2.85351 3.05699 3.13577 3.18788 3.25431 3.30855 3.76205 3.91634 4.02314 4.02918 4.17433 4.22345 4.42615 4.59320 4.68943 4.74758 4.82380 4.95009 5.01276 5.04160 5.26426 5.30181 5.33430 5.37773 5.53972 5.72051 5.75514 5.99111 6.17971 6.19964 6.53378 6.69392 6.81677 6.95535 7.10112 7.12462 7.23810 7.39699 7.43408 7.57724 7.68054 7.70199 8.08700 8.21438 8.29028 8.43778 8.70949 9.00773 9.06699 10.35233 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.002130 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.644981 B =13144.120984 C =14463.357635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.305 6.305 3 C 0.327 3.673 4 C -0.178 4.178 5 C -0.021 4.021 6 C 0.025 3.975 7 N -0.525 5.525 8 C 0.531 3.469 9 O -0.480 6.480 10 C -0.160 4.160 11 C 0.143 3.857 12 H 0.128 0.872 13 N -0.733 5.733 14 C 0.073 3.927 15 C -0.137 4.137 16 C -0.187 4.187 17 C 0.082 3.918 18 C -0.465 4.465 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.810 5.810 22 Si 0.906 3.094 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.277 1.277 26 C -0.124 4.124 27 C -0.151 4.151 28 C 0.497 3.503 29 O -0.441 6.441 30 C 0.167 3.833 31 N -0.528 5.528 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.393 0.607 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.276 0.724 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.806 -10.306 17.205 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.212 6.212 3 C 0.148 3.852 4 C -0.199 4.199 5 C -0.048 4.048 6 C -0.066 4.066 7 N -0.268 5.268 8 C 0.321 3.679 9 O -0.351 6.351 10 C -0.200 4.200 11 C 0.031 3.969 12 H 0.145 0.855 13 N -0.370 5.370 14 C -0.022 4.022 15 C -0.159 4.159 16 C -0.207 4.207 17 C 0.079 3.921 18 C -0.496 4.496 19 H 0.092 0.908 20 C -0.143 4.143 21 N -0.437 5.437 22 Si 0.731 3.269 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.202 1.202 26 C -0.144 4.144 27 C -0.172 4.172 28 C 0.283 3.717 29 O -0.305 6.305 30 C 0.010 3.990 31 N -0.251 5.251 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.168 0.832 36 H 0.163 0.837 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.228 0.772 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.137 0.863 44 H 0.106 0.894 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.853 -11.189 17.003 20.925 hybrid contribution 0.918 0.227 -0.802 1.241 sum -3.935 -10.962 16.200 19.952 Atomic orbital electron populations 1.22919 0.76846 1.03160 1.02766 1.86260 1.23259 1.24149 1.87501 1.19914 0.89439 0.84788 0.91069 1.20956 0.91952 0.99069 1.07902 1.21414 1.00813 0.90323 0.92228 1.18518 0.93198 0.84924 1.10006 1.44616 1.49435 1.14215 1.18556 1.20935 0.76257 0.88770 0.81942 1.90779 1.55025 1.64509 1.24749 1.22825 1.05289 0.94233 0.97660 1.21211 0.92126 0.95023 0.88548 0.85495 1.43655 1.07215 1.67595 1.18535 1.17243 0.94656 1.03172 0.87113 1.19842 0.93482 1.04222 0.98351 1.20600 0.97632 1.06209 0.96305 1.17552 0.90587 0.91484 0.92427 1.19429 1.14631 1.21323 0.94207 0.90805 1.25817 0.93957 0.94402 1.00091 1.69839 1.21209 1.22195 1.30459 0.86306 0.78871 0.80900 0.80835 1.18626 1.19976 1.20241 1.20901 0.97602 1.01247 0.94644 1.19997 0.95711 1.05750 0.95777 1.22600 0.79897 0.87031 0.82212 1.90830 1.38286 1.77769 1.23644 1.22380 0.91033 0.94296 0.91328 1.67382 1.40061 0.98212 1.19446 0.88419 0.92122 0.91977 0.83171 0.83657 0.85413 0.85119 0.77210 0.89437 0.88915 0.91328 0.86278 0.89374 0.81978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.27 10.48 -18.92 -0.20 -3.47 16 3 C 0.33 3.89 7.49 -17.13 -0.13 3.76 16 4 C -0.18 -1.89 10.04 -39.30 -0.39 -2.28 16 5 C -0.02 -0.24 9.97 -39.14 -0.39 -0.63 16 6 C 0.03 0.32 4.96 -83.39 -0.41 -0.10 16 7 N -0.53 -6.36 2.64 -59.28 -0.16 -6.52 16 8 C 0.53 5.72 7.97 -11.08 -0.09 5.63 16 9 O -0.48 -6.32 17.62 5.60 0.10 -6.23 16 10 C -0.16 -1.25 6.79 -26.93 -0.18 -1.43 16 11 C 0.14 1.67 2.99 -68.14 -0.20 1.46 16 12 H 0.13 1.41 6.62 -51.93 -0.34 1.06 16 13 N -0.73 -10.61 5.30 -52.24 -0.28 -10.89 16 14 C 0.07 1.45 6.66 -83.69 -0.56 0.89 16 15 C -0.14 -2.93 8.80 -39.77 -0.35 -3.28 16 16 C -0.19 -4.52 9.74 -39.27 -0.38 -4.90 16 17 C 0.08 2.17 5.54 -106.80 -0.59 1.57 16 18 C -0.46 -12.39 9.04 -37.87 -0.34 -12.73 16 19 H 0.07 1.90 7.88 -52.49 -0.41 1.49 16 20 C 0.07 1.84 5.20 -17.34 -0.09 1.75 16 21 N -0.81 -21.30 10.95 55.54 0.61 -20.69 16 22 Si 0.91 19.04 29.58 -169.99 -5.03 14.01 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.12 -3.12 8.60 -39.27 -0.34 -3.46 16 27 C -0.15 -3.29 9.82 -39.77 -0.39 -3.69 16 28 C 0.50 6.98 7.58 -11.09 -0.08 6.90 16 29 O -0.44 -8.14 17.10 5.60 0.10 -8.05 16 30 C 0.17 2.09 10.96 -17.37 -0.19 1.90 16 31 N -0.53 -6.66 9.20 -13.19 -0.12 -6.78 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 34 H 0.06 0.52 8.10 -51.93 -0.42 0.09 16 35 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.13 0.80 7.66 -51.93 -0.40 0.40 16 38 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.39 4.83 8.31 -40.82 -0.34 4.49 16 40 H 0.09 1.66 6.08 -52.49 -0.32 1.34 16 41 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 42 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 43 H 0.12 3.13 6.28 -52.49 -0.33 2.80 16 44 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 390.61 15.07 5.89 5.89 Total: -1.00 -32.94 390.61 -8.24 -41.18 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.08 Total: 8.81 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -4.07 Total: -7.27 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.05 Total: -44.88 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.00 Total: -17.74 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.94 -8.24 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069587344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.136 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds