Wall clock time and date at job start Tue Mar 31 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35739 * 116.99960 * 2 1 4 4 C 1.38904 * 119.61343 * 179.72682 * 3 2 1 5 5 C 1.38322 * 119.17917 * 179.73129 * 4 3 2 6 6 C 1.39353 * 118.42741 * 0.52829 * 5 4 3 7 7 N 1.40368 * 120.41988 * 179.71130 * 6 5 4 8 8 C 1.33878 * 122.76104 * 292.57400 * 7 6 5 9 9 O 1.21232 * 125.39491 * 359.97438 * 8 7 6 10 10 C 1.51319 * 109.20904 * 179.84198 * 8 7 6 11 11 C 1.54232 * 103.54946 * 0.38855 * 10 8 7 12 12 H 1.08998 * 110.60381 * 118.29579 * 11 10 8 13 13 N 1.46500 * 110.60343 * 241.25848 * 11 10 8 14 14 C 1.38862 * 120.00039 * 200.58924 * 13 11 10 15 15 C 1.39566 * 119.84178 * 359.72838 * 14 13 11 16 16 C 1.36338 * 120.16147 * 179.76116 * 15 14 13 17 17 C 1.40883 * 119.83534 * 0.48518 * 16 15 14 18 18 C 1.41138 * 120.15735 * 179.78827 * 17 16 15 19 19 H 1.08001 * 119.99652 * 28.40980 * 18 17 16 20 20 C 1.39869 * 120.00273 * 208.41253 * 18 17 16 21 21 N 1.30906 * 119.99564 * 13.39695 * 20 18 17 22 22 Si 1.86797 * 119.99981 * 193.39789 * 20 18 17 23 23 H 1.48492 * 109.47253 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47144 * 120.00152 * 22 20 18 25 25 H 1.48503 * 109.46694 * 239.99663 * 22 20 18 26 26 C 1.40884 * 119.69010 * 359.76779 * 17 16 15 27 27 C 1.36337 * 119.83620 * 359.97438 * 26 17 16 28 28 C 1.33875 * 122.76736 * 112.86408 * 7 6 5 29 29 O 1.21233 * 125.38914 * 0.02562 * 28 7 6 30 30 C 1.38624 * 119.15783 * 359.73253 * 6 5 4 31 31 N 1.31930 * 120.74668 * 359.97438 * 30 6 5 32 32 H 1.08999 * 109.46838 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47159 * 300.00381 * 1 2 3 34 34 H 1.09001 * 109.46669 * 60.00475 * 1 2 3 35 35 H 1.08001 * 120.41789 * 359.97438 * 4 3 2 36 36 H 1.08000 * 120.78709 * 180.26119 * 5 4 3 37 37 H 1.08994 * 110.79561 * 241.78181 * 10 8 7 38 38 H 1.08999 * 110.54847 * 118.87394 * 10 8 7 39 39 H 0.97005 * 120.00122 * 20.58731 * 13 11 10 40 40 H 1.08001 * 119.91795 * 359.97438 * 15 14 13 41 41 H 1.07998 * 120.08374 * 180.23062 * 16 15 14 42 42 H 0.96999 * 119.99593 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.08562 * 180.02562 * 26 17 16 44 44 H 1.08007 * 119.92399 * 179.97438 * 27 26 17 45 45 H 1.08000 * 119.62182 * 180.02562 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4328 1.2728 0.0058 5 6 4.0515 2.5100 0.0000 6 6 3.2521 3.6514 0.0000 7 7 3.8358 4.9279 0.0004 8 6 4.5298 5.4069 1.0403 9 8 4.7343 4.8170 2.0795 10 6 5.0212 6.7998 0.7117 11 6 4.4766 7.0493 -0.7095 12 1 3.7925 7.8978 -0.7147 13 7 5.5767 7.2664 -1.6524 14 6 5.3409 7.9164 -2.8566 15 6 4.0536 8.3564 -3.1679 16 6 3.8157 8.9996 -4.3463 17 6 4.8713 9.2106 -5.2551 18 6 4.6318 9.8717 -6.4789 19 1 3.8348 10.5967 -6.5540 20 6 5.4265 9.5879 -7.5944 21 7 6.2095 8.5389 -7.5902 22 14 5.3703 10.7057 -9.0899 23 1 4.4122 11.8133 -8.8443 24 1 6.7225 11.2665 -9.3398 25 1 4.9313 9.9256 -10.2747 26 6 6.1672 8.7590 -4.9365 27 6 6.3914 8.1220 -3.7522 28 6 3.7397 5.7689 -1.0368 29 8 3.1545 5.5409 -2.0737 30 6 1.8730 3.5102 -0.0001 31 7 1.3176 2.3135 -0.0006 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 4.0216 0.3674 0.0106 36 1 5.1285 2.5894 0.0001 37 1 6.1105 6.8372 0.7172 38 1 4.6100 7.5259 1.4130 39 1 6.4698 6.9561 -1.4354 40 1 3.2445 8.1900 -2.4721 41 1 2.8197 9.3428 -4.5842 42 1 6.7609 8.3423 -8.3636 43 1 6.9811 8.9177 -5.6284 44 1 7.3843 7.7748 -3.5067 45 1 1.2463 4.3897 -0.0006 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069587344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:22 Heat of formation + Delta-G solvation = -36.646653 kcal Electronic energy + Delta-G solvation = -31810.421490 eV Core-core repulsion = 27372.323174 eV Total energy + Delta-G solvation = -4438.098317 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.42213 -41.60396 -39.99833 -39.51212 -38.99691 -37.27835 -36.64818 -35.07616 -33.78524 -32.98011 -31.40451 -30.71963 -29.75594 -28.21500 -27.07821 -26.08349 -24.98410 -24.49489 -23.67935 -22.45610 -22.10539 -21.05372 -19.62336 -19.17585 -18.99287 -18.76348 -18.02092 -17.75773 -17.16713 -17.11877 -16.99280 -16.51308 -16.10086 -15.77611 -15.63636 -15.41811 -15.29884 -15.04846 -14.74638 -14.67103 -14.55424 -14.42170 -14.12282 -13.85072 -13.82583 -13.58415 -13.15025 -12.93032 -12.82369 -12.75175 -12.63932 -12.39728 -12.30988 -12.00972 -11.71267 -11.50847 -11.47946 -11.18634 -11.14320 -11.03652 -10.72278 -10.37437 -9.63612 -9.36285 -8.51846 -8.21743 -6.05081 -0.24873 -0.05484 0.36863 1.06534 1.21412 1.28373 1.40775 1.50524 1.54990 1.58993 1.97133 2.28377 2.39058 2.67813 2.85791 3.06022 3.16424 3.21985 3.32832 3.55068 3.74279 3.84967 3.87506 4.09811 4.14777 4.37238 4.37573 4.45692 4.47579 4.51585 4.61096 4.65824 4.70907 4.76460 4.84776 5.02829 5.13686 5.18369 5.31366 5.40714 5.59973 5.69218 5.76924 5.92936 5.99198 6.19028 6.20137 6.40177 6.49292 6.60317 6.68305 6.83178 7.04172 7.10015 7.23738 8.51123 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.002130 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.644981 B =13144.120984 C =14463.357635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.313 3.687 4 C -0.174 4.174 5 C -0.028 4.028 6 C 0.004 3.996 7 N -0.521 5.521 8 C 0.535 3.465 9 O -0.501 6.501 10 C -0.136 4.136 11 C 0.141 3.859 12 H 0.141 0.859 13 N -0.721 5.721 14 C 0.107 3.893 15 C -0.145 4.145 16 C -0.199 4.199 17 C 0.040 3.960 18 C -0.503 4.503 19 H 0.066 0.934 20 C 0.028 3.972 21 N -0.847 5.847 22 Si 0.977 3.023 23 H -0.261 1.261 24 H -0.265 1.265 25 H -0.272 1.272 26 C -0.142 4.142 27 C -0.162 4.162 28 C 0.500 3.500 29 O -0.493 6.493 30 C 0.154 3.846 31 N -0.541 5.541 32 H 0.128 0.872 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.176 0.824 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.170 0.830 39 H 0.409 0.591 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.281 0.719 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.030 -10.733 19.531 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.218 6.218 3 C 0.135 3.865 4 C -0.195 4.195 5 C -0.054 4.054 6 C -0.088 4.088 7 N -0.263 5.263 8 C 0.327 3.673 9 O -0.373 6.373 10 C -0.175 4.175 11 C 0.029 3.971 12 H 0.158 0.842 13 N -0.359 5.359 14 C 0.009 3.991 15 C -0.167 4.167 16 C -0.220 4.220 17 C 0.037 3.963 18 C -0.535 4.535 19 H 0.085 0.915 20 C -0.183 4.183 21 N -0.475 5.475 22 Si 0.799 3.201 23 H -0.184 1.184 24 H -0.190 1.190 25 H -0.197 1.197 26 C -0.162 4.162 27 C -0.183 4.183 28 C 0.288 3.712 29 O -0.362 6.362 30 C -0.003 4.003 31 N -0.265 5.265 32 H 0.146 0.854 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.194 0.806 36 H 0.179 0.821 37 H 0.173 0.827 38 H 0.188 0.812 39 H 0.246 0.754 40 H 0.131 0.869 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.133 0.867 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.062 -11.641 19.411 22.996 hybrid contribution 0.599 0.163 -1.248 1.394 sum -3.463 -11.478 18.163 21.763 Atomic orbital electron populations 1.23133 0.75519 1.05060 1.02352 1.86259 1.24623 1.23564 1.87315 1.20234 0.90185 0.84983 0.91138 1.21264 0.91740 0.99878 1.06614 1.21664 1.01600 0.90185 0.91915 1.18755 0.93564 0.85657 1.10791 1.44628 1.49220 1.13896 1.18565 1.21419 0.75354 0.89529 0.81042 1.90786 1.55759 1.65274 1.25468 1.22896 1.06862 0.92673 0.95098 1.21486 0.91492 0.94182 0.89912 0.84190 1.43605 1.09017 1.66187 1.17052 1.17260 0.93375 1.00341 0.88083 1.20077 0.95000 1.03688 0.97947 1.20778 0.97245 1.06681 0.97253 1.17859 0.91742 0.93368 0.93328 1.19628 1.15843 1.22523 0.95515 0.91545 1.26604 0.93385 0.95549 1.02722 1.69908 1.22361 1.23658 1.31606 0.85231 0.79120 0.78776 0.76946 1.18422 1.18985 1.19738 1.20841 0.96772 1.02750 0.95872 1.20234 0.97657 1.05364 0.95074 1.22908 0.78990 0.87755 0.81571 1.90819 1.40669 1.78860 1.25806 1.22535 0.91423 0.94583 0.91763 1.67360 1.40633 0.98538 1.19943 0.85399 0.92156 0.92753 0.80640 0.82098 0.82702 0.81208 0.75388 0.86885 0.89059 0.90902 0.88313 0.86667 0.81440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.38 113.37 1.18 1.68 16 2 O -0.31 -6.37 10.48 -90.63 -0.95 -7.32 16 3 C 0.31 7.26 7.49 84.79 0.63 7.89 16 4 C -0.17 -3.47 10.04 22.45 0.23 -3.24 16 5 C -0.03 -0.59 9.97 22.56 0.22 -0.36 16 6 C 0.00 0.10 4.96 38.13 0.19 0.29 16 7 N -0.52 -11.54 2.64 -579.28 -1.53 -13.06 16 8 C 0.53 9.69 7.97 87.99 0.70 10.39 16 9 O -0.50 -11.71 17.62 -2.88 -0.05 -11.76 16 10 C -0.14 -1.41 6.79 30.46 0.21 -1.21 16 11 C 0.14 2.72 2.99 44.86 0.13 2.86 16 12 H 0.14 2.50 6.62 -2.39 -0.02 2.48 16 13 N -0.72 -18.21 5.30 -319.18 -1.69 -19.90 16 14 C 0.11 4.04 6.66 38.67 0.26 4.30 16 15 C -0.15 -6.04 8.80 22.15 0.19 -5.85 16 16 C -0.20 -9.84 9.74 22.47 0.22 -9.62 16 17 C 0.04 2.17 5.54 -21.27 -0.12 2.05 16 18 C -0.50 -28.17 9.04 23.38 0.21 -27.96 16 19 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 20 C 0.03 1.50 5.20 85.23 0.44 1.94 16 21 N -0.85 -46.30 10.95 21.82 0.24 -46.07 16 22 Si 0.98 40.28 29.58 68.60 2.03 42.31 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 C -0.14 -7.38 8.60 22.47 0.19 -7.18 16 27 C -0.16 -6.92 9.82 22.15 0.22 -6.70 16 28 C 0.50 13.03 7.58 87.99 0.67 13.70 16 29 O -0.49 -17.91 17.10 -2.88 -0.05 -17.96 16 30 C 0.15 3.82 10.96 84.77 0.93 4.75 16 31 N -0.54 -13.60 9.20 -308.47 -2.84 -16.44 16 32 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 34 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 35 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.16 0.95 7.66 -2.39 -0.02 0.93 16 38 H 0.17 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.41 8.16 8.31 -92.70 -0.77 7.39 16 40 H 0.11 4.06 6.08 -2.91 -0.02 4.05 16 41 H 0.09 4.37 8.06 -2.91 -0.02 4.34 16 42 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 43 H 0.10 5.44 6.28 -2.91 -0.02 5.42 16 44 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 45 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -76.35 390.61 2.16 -74.19 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.29 Total: 28.28 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 6.71 Total: -12.26 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -5.82 Total: -95.46 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -1.05 Total: -37.05 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -76.35 2.16 -74.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069587344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.540 kcal (2) G-P(sol) polarization free energy of solvation -76.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds