Wall clock time and date at job start Tue Mar 31 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99862 * 2 1 4 4 H 1.48499 * 109.47166 * 270.00228 * 3 2 1 5 5 H 1.48505 * 109.46733 * 30.00253 * 3 2 1 6 6 H 1.48494 * 109.46826 * 149.99952 * 3 2 1 7 7 C 1.37876 * 120.00459 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99276 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00168 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.46813 * 180.02562 * 9 7 2 11 11 C 1.46507 * 120.00072 * 275.67957 * 10 9 7 12 12 C 1.50703 * 109.47092 * 270.00203 * 11 10 9 13 13 C 1.38669 * 120.41732 * 269.71826 * 12 11 10 14 14 C 1.38634 * 118.41608 * 179.78488 * 13 12 11 15 15 C 1.38226 * 119.16200 * 0.51448 * 14 13 12 16 16 N 1.31855 * 120.75998 * 359.72360 * 15 14 13 17 17 C 1.31882 * 121.72880 * 0.02562 * 16 15 14 18 18 C 1.34779 * 120.00412 * 95.68466 * 10 9 7 19 19 O 1.21583 * 120.00423 * 185.02753 * 18 10 9 20 20 C 1.47608 * 119.99718 * 5.02409 * 18 10 9 21 21 C 1.39729 * 120.08725 * 311.41606 * 20 18 10 22 22 C 1.37697 * 119.91236 * 180.25312 * 21 20 18 23 23 C 1.39001 * 120.08884 * 0.02562 * 22 21 20 24 24 O 1.35708 * 119.91452 * 179.97438 * 23 22 21 25 25 C 1.42896 * 116.99856 * 0.02656 * 24 23 22 26 26 C 1.53002 * 109.47137 * 179.97438 * 25 24 23 27 27 C 1.52999 * 117.50245 * 243.74566 * 26 25 24 28 28 C 1.53001 * 117.50092 * 175.08498 * 26 25 24 29 29 C 1.38998 * 120.17368 * 0.02562 * 23 22 21 30 30 C 1.37703 * 120.08955 * 359.97043 * 29 23 22 31 31 H 0.97005 * 120.00120 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.47148 * 60.00190 * 9 7 2 33 33 H 1.09002 * 109.47229 * 299.99459 * 9 7 2 34 34 H 1.09001 * 109.46856 * 30.00385 * 11 10 9 35 35 H 1.08994 * 109.47250 * 150.00271 * 11 10 9 36 36 H 1.07994 * 120.79206 * 0.02562 * 13 12 11 37 37 H 1.07996 * 120.41473 * 180.22135 * 14 13 12 38 38 H 1.07995 * 119.61832 * 179.75281 * 15 14 13 39 39 H 1.08004 * 119.61711 * 180.02562 * 17 16 15 40 40 H 1.08008 * 120.04825 * 0.25643 * 21 20 18 41 41 H 1.07995 * 119.96092 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.47340 * 299.99781 * 25 24 23 43 43 H 1.09007 * 109.47374 * 60.00095 * 25 24 23 44 44 H 1.09009 * 115.54548 * 29.42008 * 26 25 24 45 45 H 1.08999 * 117.49541 * 0.02562 * 27 26 25 46 46 H 1.09002 * 117.49846 * 145.02002 * 27 26 25 47 47 H 1.08999 * 117.49822 * 214.98531 * 28 26 25 48 48 H 1.09002 * 117.49845 * 0.02562 * 28 26 25 49 49 H 1.08002 * 119.95499 * 179.97438 * 29 23 22 50 50 H 1.07997 * 120.04594 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1939 0.0000 10 7 3.9998 -2.5751 -0.0013 11 6 4.1252 -3.3090 1.2605 12 6 5.5011 -3.0895 1.8348 13 6 6.5419 -3.9466 1.5110 14 6 7.7918 -3.7033 2.0594 15 6 7.9551 -2.6285 2.9130 16 7 6.9410 -1.8370 3.2025 17 6 5.7398 -2.0352 2.6955 18 6 4.3340 -3.1707 -1.1633 19 8 4.6517 -4.3442 -1.1756 20 6 4.3140 -2.3982 -2.4209 21 6 3.2029 -1.6152 -2.7446 22 6 3.1860 -0.9002 -3.9212 23 6 4.2721 -0.9570 -4.7869 24 8 4.2514 -0.2513 -5.9458 25 6 3.0829 0.5275 -6.2104 26 6 3.2425 1.2473 -7.5510 27 6 3.2774 2.7768 -7.5320 28 6 2.0454 2.0457 -8.0712 29 6 5.3788 -1.7356 -4.4690 30 6 5.4035 -2.4535 -3.2942 31 1 -0.4850 0.8401 0.0004 32 1 3.8745 -0.6807 0.8905 33 1 3.8752 -0.6795 -0.8895 34 1 3.3755 -2.9499 1.9656 35 1 3.9728 -4.3729 1.0787 36 1 6.3837 -4.7815 0.8445 37 1 8.6260 -4.3483 1.8263 38 1 8.9246 -2.4345 3.3475 39 1 4.9335 -1.3653 2.9555 40 1 2.3584 -1.5708 -2.0727 41 1 2.3278 -0.2945 -4.1719 42 1 2.2117 -0.1264 -6.2501 43 1 2.9492 1.2631 -5.4171 44 1 3.8661 0.7387 -8.2864 45 1 3.1871 3.2702 -6.5643 46 1 3.9236 3.2745 -8.2550 47 1 1.8816 2.0626 -9.1487 48 1 1.1442 2.0584 -7.4580 49 1 6.2206 -1.7774 -5.1444 50 1 6.2639 -3.0579 -3.0478 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069595120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:17 Heat of formation + Delta-G solvation = 21.305660 kcal Electronic energy + Delta-G solvation = -32652.265174 eV Core-core repulsion = 28417.938863 eV Total energy + Delta-G solvation = -4234.326310 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.36094 -39.96766 -39.10543 -37.60613 -36.37035 -35.44232 -33.17714 -32.27582 -31.56179 -30.73701 -29.96784 -28.27159 -27.65788 -26.06669 -23.44936 -23.09276 -22.65314 -22.62041 -22.43865 -21.57607 -20.62729 -18.95843 -18.05834 -17.28511 -16.93381 -16.71836 -16.46460 -15.95935 -15.92462 -15.60208 -15.27671 -14.92747 -14.49639 -14.42837 -14.27288 -14.01103 -13.55944 -13.40220 -13.15063 -13.07992 -12.91005 -12.82945 -12.64367 -12.54931 -12.19445 -11.87254 -11.82106 -11.77947 -11.47778 -11.34125 -11.18389 -11.01905 -10.78131 -10.73299 -10.41842 -10.39438 -10.14629 -9.80137 -9.67536 -9.35795 -9.31917 -8.87433 -8.82729 -8.66996 -7.97694 -7.85040 -6.36683 -4.38840 1.21628 1.42293 1.44334 1.71347 3.05022 3.08755 3.18151 3.21764 3.25505 3.57294 3.64065 4.08453 4.15116 4.17370 4.49537 4.58774 4.60916 4.73889 4.91285 4.94667 5.00050 5.07527 5.09359 5.10586 5.19096 5.20809 5.27138 5.31414 5.36993 5.38337 5.57229 5.61062 5.62789 5.73975 5.81215 5.83752 5.91343 5.95020 5.98590 6.12783 6.27318 6.31657 6.36477 6.44019 6.53566 6.62256 6.76158 6.85090 6.86479 7.05430 7.17555 7.31274 7.55467 7.95514 8.10383 8.26416 8.67072 8.76956 9.22129 10.74305 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.003041 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.243223 B = 9204.272976 C =10769.636589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.084 3.916 3 Si 0.861 3.139 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.201 3.799 10 N -0.580 5.580 11 C 0.160 3.840 12 C -0.146 4.146 13 C -0.057 4.057 14 C -0.180 4.180 15 C 0.090 3.910 16 N -0.489 5.489 17 C 0.113 3.887 18 C 0.568 3.432 19 O -0.563 6.563 20 C -0.164 4.164 21 C -0.035 4.035 22 C -0.219 4.219 23 C 0.142 3.858 24 O -0.314 6.314 25 C 0.088 3.912 26 C -0.155 4.155 27 C -0.178 4.178 28 C -0.171 4.171 29 C -0.171 4.171 30 C -0.037 4.037 31 H 0.269 0.731 32 H 0.032 0.968 33 H 0.039 0.961 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.150 0.850 39 H 0.157 0.843 40 H 0.177 0.823 41 H 0.129 0.871 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.116 0.884 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.099 0.901 48 H 0.098 0.902 49 H 0.129 0.871 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.276 0.440 -7.641 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.121 4.121 3 Si 0.687 3.313 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.102 0.898 9 C 0.080 3.920 10 N -0.309 5.309 11 C 0.036 3.964 12 C -0.149 4.149 13 C -0.083 4.083 14 C -0.199 4.199 15 C -0.067 4.067 16 N -0.198 5.198 17 C -0.045 4.045 18 C 0.358 3.642 19 O -0.444 6.444 20 C -0.167 4.167 21 C -0.053 4.053 22 C -0.238 4.238 23 C 0.097 3.903 24 O -0.227 6.227 25 C 0.013 3.987 26 C -0.173 4.173 27 C -0.214 4.214 28 C -0.208 4.208 29 C -0.190 4.190 30 C -0.056 4.056 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.168 0.832 39 H 0.174 0.826 40 H 0.194 0.806 41 H 0.147 0.853 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.134 0.866 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.147 0.853 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.514 0.704 -7.210 11.958 hybrid contribution -0.007 0.489 -0.521 0.715 sum 9.507 1.193 -7.731 12.312 Atomic orbital electron populations 1.69881 1.06152 1.27461 1.48305 1.24828 0.94637 0.98736 0.93902 0.87058 0.80818 0.84151 0.79272 1.19638 1.20663 1.18572 1.21324 0.88935 0.95156 1.52959 0.89845 1.20036 0.95776 0.78028 0.98151 1.47824 1.62695 1.15839 1.04514 1.20172 0.91688 0.98434 0.86066 1.21447 0.98144 0.96726 0.98596 1.21676 0.92017 0.98402 0.96224 1.22116 0.98168 0.99897 0.99768 1.22705 0.97692 0.91230 0.95087 1.67699 1.00143 1.28330 1.23616 1.22799 0.94268 0.94827 0.92568 1.18217 0.76213 0.86213 0.83586 1.90674 1.50696 1.15954 1.87050 1.19778 0.97169 1.03090 0.96690 1.22380 0.98922 0.89003 0.94984 1.21263 0.99189 1.06325 0.97013 1.19232 0.94507 0.91508 0.85100 1.85939 1.41131 1.58797 1.36881 1.22333 0.87045 0.93790 0.95576 1.22097 1.03417 0.93738 0.98050 1.23123 1.01108 0.93928 1.03287 1.23011 0.92810 1.03402 1.01534 1.20153 0.98115 1.01637 0.99049 1.20847 0.97198 0.95782 0.91746 0.92123 0.94966 0.94306 0.88521 0.89282 0.84405 0.85157 0.83236 0.82582 0.80606 0.85325 0.91240 0.91585 0.86642 0.88429 0.88487 0.88214 0.88327 0.85290 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.84 13.96 55.43 0.77 -23.07 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 3 Si 0.86 19.01 27.47 -169.99 -4.67 14.34 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 7 C -0.55 -13.18 7.39 -34.44 -0.25 -13.44 16 8 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 9 C 0.20 4.25 3.73 -5.20 -0.02 4.23 16 10 N -0.58 -11.37 2.44 -177.64 -0.43 -11.80 16 11 C 0.16 2.74 5.62 -5.19 -0.03 2.71 16 12 C -0.15 -2.31 5.48 -104.48 -0.57 -2.88 16 13 C -0.06 -0.82 9.86 -39.28 -0.39 -1.21 16 14 C -0.18 -2.24 10.11 -39.44 -0.40 -2.64 16 15 C 0.09 1.18 11.18 -17.55 -0.20 0.98 16 16 N -0.49 -7.66 10.36 -13.26 -0.14 -7.80 16 17 C 0.11 1.79 10.86 -17.55 -0.19 1.59 16 18 C 0.57 11.48 7.23 -12.44 -0.09 11.39 16 19 O -0.56 -12.01 16.47 5.29 0.09 -11.92 16 20 C -0.16 -3.13 4.94 -104.96 -0.52 -3.65 16 21 C -0.04 -0.68 7.52 -39.22 -0.29 -0.97 16 22 C -0.22 -3.78 9.01 -39.50 -0.36 -4.14 16 23 C 0.14 2.28 6.70 -39.02 -0.26 2.02 16 24 O -0.31 -4.58 10.12 -18.83 -0.19 -4.77 16 25 C 0.09 1.07 5.02 37.16 0.19 1.25 16 26 C -0.15 -1.55 6.05 -90.62 -0.55 -2.10 16 27 C -0.18 -1.58 10.18 -26.69 -0.27 -1.85 16 28 C -0.17 -1.42 10.25 -26.69 -0.27 -1.69 16 29 C -0.17 -2.63 9.97 -39.50 -0.39 -3.02 16 30 C -0.04 -0.61 9.71 -39.22 -0.38 -0.99 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.03 0.68 7.17 -51.93 -0.37 0.31 16 33 H 0.04 0.84 4.84 -51.93 -0.25 0.59 16 34 H 0.10 1.61 8.02 -51.93 -0.42 1.19 16 35 H 0.09 1.51 7.31 -51.93 -0.38 1.13 16 36 H 0.14 2.00 7.96 -52.49 -0.42 1.58 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.16 2.38 8.06 -52.48 -0.42 1.95 16 40 H 0.18 3.83 4.74 -52.48 -0.25 3.58 16 41 H 0.13 2.05 6.28 -52.49 -0.33 1.72 16 42 H 0.07 0.81 7.65 -51.93 -0.40 0.41 16 43 H 0.07 0.82 7.39 -51.92 -0.38 0.43 16 44 H 0.12 1.13 8.14 -51.92 -0.42 0.70 16 45 H 0.10 0.89 8.03 -51.93 -0.42 0.48 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 50 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 416.49 15.07 6.28 6.28 Total: -1.00 -29.03 416.49 -10.65 -39.68 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.01 Total: 11.45 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -5.35 Total: -12.39 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.20 Total: -42.67 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.10 Total: -16.69 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.67 Total: 14.34 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -29.03 -10.65 -39.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069595120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.991 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds