Wall clock time and date at job start Tue Mar 31 2020 05:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99862 * 2 1 4 4 H 1.48499 * 109.47166 * 270.00228 * 3 2 1 5 5 H 1.48505 * 109.46733 * 30.00253 * 3 2 1 6 6 H 1.48494 * 109.46826 * 149.99952 * 3 2 1 7 7 C 1.37876 * 120.00459 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99276 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00168 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.46813 * 180.02562 * 9 7 2 11 11 C 1.46507 * 120.00072 * 275.67957 * 10 9 7 12 12 C 1.50703 * 109.47092 * 270.00203 * 11 10 9 13 13 C 1.38669 * 120.41732 * 269.71826 * 12 11 10 14 14 C 1.38634 * 118.41608 * 179.78488 * 13 12 11 15 15 C 1.38226 * 119.16200 * 0.51448 * 14 13 12 16 16 N 1.31855 * 120.75998 * 359.72360 * 15 14 13 17 17 C 1.31882 * 121.72880 * 0.02562 * 16 15 14 18 18 C 1.34779 * 120.00412 * 95.68466 * 10 9 7 19 19 O 1.21583 * 120.00423 * 185.02753 * 18 10 9 20 20 C 1.47608 * 119.99718 * 5.02409 * 18 10 9 21 21 C 1.39729 * 120.08725 * 311.41606 * 20 18 10 22 22 C 1.37697 * 119.91236 * 180.25312 * 21 20 18 23 23 C 1.39001 * 120.08884 * 0.02562 * 22 21 20 24 24 O 1.35708 * 119.91452 * 179.97438 * 23 22 21 25 25 C 1.42896 * 116.99856 * 0.02656 * 24 23 22 26 26 C 1.53002 * 109.47137 * 179.97438 * 25 24 23 27 27 C 1.52999 * 117.50245 * 243.74566 * 26 25 24 28 28 C 1.53001 * 117.50092 * 175.08498 * 26 25 24 29 29 C 1.38998 * 120.17368 * 0.02562 * 23 22 21 30 30 C 1.37703 * 120.08955 * 359.97043 * 29 23 22 31 31 H 0.97005 * 120.00120 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.47148 * 60.00190 * 9 7 2 33 33 H 1.09002 * 109.47229 * 299.99459 * 9 7 2 34 34 H 1.09001 * 109.46856 * 30.00385 * 11 10 9 35 35 H 1.08994 * 109.47250 * 150.00271 * 11 10 9 36 36 H 1.07994 * 120.79206 * 0.02562 * 13 12 11 37 37 H 1.07996 * 120.41473 * 180.22135 * 14 13 12 38 38 H 1.07995 * 119.61832 * 179.75281 * 15 14 13 39 39 H 1.08004 * 119.61711 * 180.02562 * 17 16 15 40 40 H 1.08008 * 120.04825 * 0.25643 * 21 20 18 41 41 H 1.07995 * 119.96092 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.47340 * 299.99781 * 25 24 23 43 43 H 1.09007 * 109.47374 * 60.00095 * 25 24 23 44 44 H 1.09009 * 115.54548 * 29.42008 * 26 25 24 45 45 H 1.08999 * 117.49541 * 0.02562 * 27 26 25 46 46 H 1.09002 * 117.49846 * 145.02002 * 27 26 25 47 47 H 1.08999 * 117.49822 * 214.98531 * 28 26 25 48 48 H 1.09002 * 117.49845 * 0.02562 * 28 26 25 49 49 H 1.08002 * 119.95499 * 179.97438 * 29 23 22 50 50 H 1.07997 * 120.04594 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1939 0.0000 10 7 3.9998 -2.5751 -0.0013 11 6 4.1252 -3.3090 1.2605 12 6 5.5011 -3.0895 1.8348 13 6 6.5419 -3.9466 1.5110 14 6 7.7918 -3.7033 2.0594 15 6 7.9551 -2.6285 2.9130 16 7 6.9410 -1.8370 3.2025 17 6 5.7398 -2.0352 2.6955 18 6 4.3340 -3.1707 -1.1633 19 8 4.6517 -4.3442 -1.1756 20 6 4.3140 -2.3982 -2.4209 21 6 3.2029 -1.6152 -2.7446 22 6 3.1860 -0.9002 -3.9212 23 6 4.2721 -0.9570 -4.7869 24 8 4.2514 -0.2513 -5.9458 25 6 3.0829 0.5275 -6.2104 26 6 3.2425 1.2473 -7.5510 27 6 3.2774 2.7768 -7.5320 28 6 2.0454 2.0457 -8.0712 29 6 5.3788 -1.7356 -4.4690 30 6 5.4035 -2.4535 -3.2942 31 1 -0.4850 0.8401 0.0004 32 1 3.8745 -0.6807 0.8905 33 1 3.8752 -0.6795 -0.8895 34 1 3.3755 -2.9499 1.9656 35 1 3.9728 -4.3729 1.0787 36 1 6.3837 -4.7815 0.8445 37 1 8.6260 -4.3483 1.8263 38 1 8.9246 -2.4345 3.3475 39 1 4.9335 -1.3653 2.9555 40 1 2.3584 -1.5708 -2.0727 41 1 2.3278 -0.2945 -4.1719 42 1 2.2117 -0.1264 -6.2501 43 1 2.9492 1.2631 -5.4171 44 1 3.8661 0.7387 -8.2864 45 1 3.1871 3.2702 -6.5643 46 1 3.9236 3.2745 -8.2550 47 1 1.8816 2.0626 -9.1487 48 1 1.1442 2.0584 -7.4580 49 1 6.2206 -1.7774 -5.1444 50 1 6.2639 -3.0579 -3.0478 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069595120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:16 Heat of formation + Delta-G solvation = 7.617166 kcal Electronic energy + Delta-G solvation = -32652.858751 eV Core-core repulsion = 28417.938863 eV Total energy + Delta-G solvation = -4234.919888 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.71163 -41.12852 -40.42439 -38.62537 -37.45229 -37.05227 -34.86130 -33.72654 -32.74222 -32.06182 -31.26359 -30.01033 -28.72363 -27.39335 -24.84315 -24.44066 -23.94230 -23.86382 -23.30729 -22.81060 -21.52225 -20.43776 -19.31019 -19.09819 -18.33074 -17.97907 -17.68634 -17.19376 -17.11060 -16.80548 -16.55603 -16.22840 -15.96573 -15.70560 -15.52096 -15.13531 -14.80848 -14.73753 -14.50064 -14.47158 -14.31782 -14.08663 -13.95587 -13.80800 -13.59379 -13.39822 -13.25557 -12.79119 -12.67287 -12.55781 -12.45164 -12.38428 -12.22991 -12.08326 -11.81109 -11.67766 -11.41363 -11.03998 -10.95052 -10.82045 -10.69856 -10.47623 -10.04163 -9.98604 -9.55190 -9.21406 -8.34248 -6.39159 0.04397 0.10515 0.31897 0.36077 1.32257 1.37391 1.44026 1.72691 1.99894 2.20762 2.28475 2.74850 2.83121 2.93115 2.98310 3.52226 3.60109 3.67601 3.81790 3.84903 3.87402 3.91654 3.93938 4.02198 4.08422 4.09468 4.16946 4.25847 4.36639 4.45425 4.48117 4.55266 4.59379 4.61942 4.68136 4.72985 4.74662 4.81983 4.87877 4.96976 5.06848 5.10326 5.18054 5.18988 5.20174 5.33909 5.37359 5.40466 5.47173 5.59785 5.68360 5.76502 6.12714 6.32251 6.51308 6.65810 6.99655 7.14514 7.27022 8.80523 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.003041 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.243223 B = 9204.272976 C =10769.636589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.040 3.960 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.532 4.532 8 H 0.042 0.958 9 C 0.215 3.785 10 N -0.583 5.583 11 C 0.161 3.839 12 C -0.157 4.157 13 C -0.065 4.065 14 C -0.167 4.167 15 C 0.091 3.909 16 N -0.509 5.509 17 C 0.100 3.900 18 C 0.564 3.436 19 O -0.579 6.579 20 C -0.186 4.186 21 C -0.051 4.051 22 C -0.224 4.224 23 C 0.148 3.852 24 O -0.313 6.313 25 C 0.081 3.919 26 C -0.167 4.167 27 C -0.178 4.178 28 C -0.161 4.161 29 C -0.161 4.161 30 C -0.032 4.032 31 H 0.270 0.730 32 H 0.038 0.962 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.167 0.833 38 H 0.187 0.813 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.135 0.865 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.120 0.880 45 H 0.092 0.908 46 H 0.111 0.889 47 H 0.117 0.883 48 H 0.098 0.902 49 H 0.161 0.839 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.470 1.373 -9.010 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.161 4.161 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.172 1.172 7 C -0.570 4.570 8 H 0.061 0.939 9 C 0.093 3.907 10 N -0.311 5.311 11 C 0.038 3.962 12 C -0.160 4.160 13 C -0.092 4.092 14 C -0.186 4.186 15 C -0.066 4.066 16 N -0.218 5.218 17 C -0.057 4.057 18 C 0.354 3.646 19 O -0.462 6.462 20 C -0.189 4.189 21 C -0.070 4.070 22 C -0.243 4.243 23 C 0.101 3.899 24 O -0.226 6.226 25 C 0.006 3.994 26 C -0.185 4.185 27 C -0.214 4.214 28 C -0.197 4.197 29 C -0.179 4.179 30 C -0.051 4.051 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.153 0.847 37 H 0.185 0.815 38 H 0.203 0.797 39 H 0.170 0.830 40 H 0.163 0.837 41 H 0.153 0.847 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.138 0.862 45 H 0.110 0.890 46 H 0.129 0.871 47 H 0.136 0.864 48 H 0.116 0.884 49 H 0.179 0.821 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.714 1.633 -8.573 15.421 hybrid contribution -0.982 0.110 -0.156 1.000 sum 11.733 1.743 -8.729 14.727 Atomic orbital electron populations 1.70004 1.07856 1.28326 1.50463 1.25466 0.95124 1.01849 0.93640 0.86188 0.80058 0.80150 0.79774 1.18681 1.20709 1.17158 1.21313 0.90486 0.93489 1.51761 0.93932 1.19765 0.93486 0.79168 0.98272 1.47854 1.62409 1.15380 1.05446 1.20194 0.93089 0.97816 0.85143 1.21229 0.97498 0.97749 0.99497 1.21773 0.92736 0.98136 0.96513 1.22470 0.98124 0.99763 0.98231 1.23353 0.98330 0.90497 0.94438 1.67726 1.00447 1.29438 1.24191 1.22752 0.94757 0.95030 0.93134 1.18490 0.75823 0.86169 0.84074 1.90645 1.51692 1.16496 1.87352 1.19815 0.98222 1.03901 0.96948 1.22023 0.98406 0.90801 0.95721 1.21304 1.00158 1.06201 0.96650 1.19323 0.94103 0.91262 0.85168 1.85958 1.42213 1.58590 1.35844 1.22538 0.86386 0.93624 0.96808 1.22079 1.05122 0.94311 0.97004 1.23210 1.01687 0.93022 1.03529 1.23120 0.92294 1.01753 1.02575 1.20484 0.98581 1.00107 0.98726 1.21046 0.96793 0.95753 0.91524 0.92066 0.94428 0.94002 0.88951 0.89682 0.84696 0.81526 0.79654 0.83019 0.83708 0.84733 0.91054 0.91998 0.86219 0.88968 0.87062 0.86447 0.88371 0.82134 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.27 13.96 21.45 0.30 -51.97 16 2 C 0.04 2.08 5.47 84.66 0.46 2.55 16 3 Si 0.91 39.40 27.47 68.60 1.88 41.28 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.25 -10.08 6.54 99.48 0.65 -9.43 16 7 C -0.53 -26.98 7.39 25.60 0.19 -26.79 16 8 H 0.04 2.47 8.06 -2.91 -0.02 2.44 16 9 C 0.21 9.30 3.73 85.63 0.32 9.62 16 10 N -0.58 -23.57 2.44 -834.18 -2.04 -25.61 16 11 C 0.16 5.72 5.62 85.63 0.48 6.20 16 12 C -0.16 -4.95 5.48 -19.77 -0.11 -5.06 16 13 C -0.07 -1.81 9.86 22.47 0.22 -1.59 16 14 C -0.17 -3.66 10.11 22.36 0.23 -3.43 16 15 C 0.09 2.10 11.18 84.69 0.95 3.05 16 16 N -0.51 -15.15 10.36 -195.85 -2.03 -17.18 16 17 C 0.10 3.15 10.86 84.67 0.92 4.07 16 18 C 0.56 23.27 7.23 86.72 0.63 23.90 16 19 O -0.58 -25.08 16.47 -3.98 -0.07 -25.15 16 20 C -0.19 -7.11 4.94 -20.08 -0.10 -7.21 16 21 C -0.05 -2.03 7.52 22.50 0.17 -1.87 16 22 C -0.22 -7.73 9.01 22.32 0.20 -7.53 16 23 C 0.15 4.51 6.70 22.64 0.15 4.66 16 24 O -0.31 -8.52 10.12 -90.29 -0.91 -9.44 16 25 C 0.08 1.87 5.02 71.98 0.36 2.23 16 26 C -0.17 -3.03 6.05 -10.79 -0.07 -3.09 16 27 C -0.18 -2.78 10.18 30.62 0.31 -2.47 16 28 C -0.16 -2.32 10.25 30.62 0.31 -2.01 16 29 C -0.16 -4.53 9.97 22.33 0.22 -4.31 16 30 C -0.03 -1.03 9.71 22.50 0.22 -0.81 16 31 H 0.27 14.30 8.31 -92.70 -0.77 13.53 16 32 H 0.04 1.60 7.17 -2.39 -0.02 1.58 16 33 H 0.04 1.82 4.84 -2.39 -0.01 1.81 16 34 H 0.09 3.28 8.02 -2.39 -0.02 3.26 16 35 H 0.08 3.04 7.31 -2.39 -0.02 3.03 16 36 H 0.14 3.82 7.96 -2.91 -0.02 3.80 16 37 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.19 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.15 4.73 8.06 -2.91 -0.02 4.70 16 40 H 0.15 6.69 4.74 -2.91 -0.01 6.67 16 41 H 0.13 4.34 6.28 -2.91 -0.02 4.32 16 42 H 0.07 1.60 7.65 -2.39 -0.02 1.59 16 43 H 0.06 1.48 7.39 -2.38 -0.02 1.46 16 44 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 45 H 0.09 1.55 8.03 -2.39 -0.02 1.53 16 46 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 50 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -64.44 416.49 4.11 -60.33 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: 0.90 Total: 37.63 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 6.07 Total: -9.90 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -3.77 Total: -94.76 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.98 Total: -34.59 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.88 Total: 41.28 kcal Total: -64.44 4.11 -60.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069595120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.949 kcal (2) G-P(sol) polarization free energy of solvation -64.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds