Wall clock time and date at job start Tue Mar 31 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99458 * 2 1 4 4 H 1.48497 * 109.47073 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46947 * 299.99639 * 3 2 1 6 6 H 1.48494 * 109.47067 * 59.99705 * 3 2 1 7 7 C 1.37871 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46914 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.46608 * 179.97438 * 10 9 7 12 12 C 1.34227 * 116.99412 * 179.97438 * 11 10 9 13 13 O 1.20830 * 120.00329 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99625 * 180.02562 * 12 11 10 15 15 H 1.09000 * 109.47004 * 299.99852 * 14 12 11 16 16 C 1.50693 * 109.47087 * 60.00013 * 14 12 11 17 17 C 1.38233 * 120.00207 * 259.99511 * 16 14 12 18 18 C 1.38234 * 120.00037 * 179.72405 * 17 16 14 19 19 C 1.38234 * 120.00240 * 0.26327 * 18 17 16 20 20 C 1.38238 * 119.99693 * 359.97438 * 19 18 17 21 21 C 1.38234 * 120.00067 * 0.02562 * 20 19 18 22 22 N 1.46903 * 109.47000 * 180.02562 * 14 12 11 23 23 C 1.46469 * 110.99959 * 185.85506 * 22 14 12 24 24 C 1.53183 * 109.90027 * 162.99752 * 23 22 14 25 25 S 1.81819 * 108.67533 * 62.63796 * 24 23 22 26 26 O 1.42099 * 108.69889 * 193.42677 * 25 24 23 27 27 O 1.42101 * 108.82824 * 61.98848 * 25 24 23 28 28 C 1.81810 * 101.01930 * 307.68386 * 25 24 23 29 29 C 1.46467 * 111.00109 * 60.00256 * 22 14 12 30 30 H 0.96998 * 120.00906 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47167 * 59.99724 * 9 7 2 32 32 H 1.09001 * 109.46839 * 300.00137 * 9 7 2 33 33 H 1.08999 * 109.47217 * 60.00128 * 10 9 7 34 34 H 1.08991 * 109.47283 * 299.99839 * 10 9 7 35 35 H 1.08002 * 120.00157 * 0.02562 * 17 16 14 36 36 H 1.07999 * 120.00009 * 180.28389 * 18 17 16 37 37 H 1.07997 * 120.00460 * 180.02562 * 19 18 17 38 38 H 1.08001 * 119.99624 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.00008 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.40429 * 283.13376 * 23 22 14 41 41 H 1.09007 * 109.39829 * 42.86854 * 23 22 14 42 42 H 1.08993 * 109.60395 * 302.88195 * 24 23 22 43 43 H 1.08999 * 109.60286 * 182.39061 * 24 23 22 44 44 H 1.09001 * 109.60023 * 292.55812 * 28 25 24 45 45 H 1.09000 * 109.60079 * 172.07946 * 28 25 24 46 46 H 1.09011 * 109.39944 * 317.12569 * 29 22 14 47 47 H 1.08990 * 109.40615 * 76.95549 * 29 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3467 0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8901 2.3965 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6620 0.0018 11 8 1.5196 -4.9195 0.0024 12 6 2.2508 -6.0451 0.0030 13 8 3.4574 -5.9818 0.0035 14 6 1.5667 -7.3879 0.0031 15 1 0.9435 -7.4782 0.8929 16 6 0.7062 -7.5134 -1.2276 17 6 -0.6566 -7.2977 -1.1431 18 6 -1.4451 -7.4072 -2.2733 19 6 -0.8716 -7.7377 -3.4868 20 6 0.4906 -7.9581 -3.5704 21 6 1.2790 -7.8487 -2.4402 22 7 2.5785 -8.4529 0.0045 23 6 1.9540 -9.7705 -0.1349 24 6 3.0048 -10.8041 -0.5519 25 16 4.2536 -10.9280 0.7638 26 8 5.3778 -11.6360 0.2596 27 8 3.6226 -11.3804 1.9539 28 6 4.7112 -9.1811 0.9742 29 6 3.4347 -8.3621 1.1893 30 1 -0.4851 0.8399 -0.0004 31 1 0.6248 -2.5571 -0.8896 32 1 0.6242 -2.5567 0.8903 33 1 2.8715 -3.6038 0.8923 34 1 2.8728 -3.6046 -0.8876 35 1 -1.1046 -7.0389 -0.1951 36 1 -2.5091 -7.2342 -2.2082 37 1 -1.4875 -7.8228 -4.3699 38 1 0.9387 -8.2159 -4.5186 39 1 2.3433 -8.0205 -2.5056 40 1 1.5141 -10.0653 0.8178 41 1 1.1726 -9.7223 -0.8935 42 1 3.4812 -10.4875 -1.4796 43 1 2.5275 -11.7735 -0.6953 44 1 5.2262 -8.8278 0.0809 45 1 5.3637 -9.0758 1.8410 46 1 3.6990 -7.3193 1.3659 47 1 2.8981 -8.7510 2.0546 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069616944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:01 Heat of formation + Delta-G solvation = -110.461623 kcal Electronic energy + Delta-G solvation = -31665.877239 eV Core-core repulsion = 27327.729266 eV Total energy + Delta-G solvation = -4338.147974 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.133 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.97394 -39.26140 -38.25961 -37.21730 -36.32435 -36.09686 -33.53182 -33.16738 -32.24775 -31.01888 -30.34730 -29.96544 -26.92604 -24.91052 -24.54426 -22.80047 -22.18064 -22.02198 -20.98028 -20.31921 -19.11008 -17.79742 -17.32552 -17.10594 -16.65452 -16.50806 -16.29967 -16.12123 -15.93145 -15.57631 -15.45646 -15.11085 -14.63785 -14.50277 -14.28610 -13.84331 -13.54228 -13.46477 -13.11483 -12.94517 -12.85346 -12.55045 -12.50845 -12.45233 -12.39308 -12.34293 -12.26201 -12.14902 -11.39299 -11.25425 -11.18824 -11.10359 -10.99834 -10.82054 -10.75604 -10.53145 -10.16873 -9.73607 -9.71028 -9.35391 -9.02526 -8.99632 -8.83872 -8.50097 -6.15801 -4.20389 -0.29311 1.09767 1.29587 2.31681 2.34912 2.60472 3.23636 3.27585 3.31690 3.32639 3.36427 3.68244 3.77604 4.09821 4.25844 4.32882 4.35545 4.48542 4.60568 4.68238 4.76818 4.86649 4.89789 4.97899 5.02327 5.04054 5.21077 5.24957 5.32803 5.36588 5.43342 5.50127 5.59265 5.76281 5.91133 5.97159 6.00106 6.14813 6.28107 6.39554 6.44739 6.49023 6.55181 6.82296 6.87508 7.48847 7.55297 7.80059 8.05840 8.17968 8.85276 9.44474 10.95649 Molecular weight = 367.13amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.002590 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.641625 B =10809.835147 C =12691.955830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.026 3.974 10 C 0.077 3.923 11 O -0.349 6.349 12 C 0.464 3.536 13 O -0.497 6.497 14 C 0.142 3.858 15 H 0.094 0.906 16 C -0.091 4.091 17 C -0.092 4.092 18 C -0.119 4.119 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.090 4.090 22 N -0.537 5.537 23 C 0.060 3.940 24 C -0.593 4.593 25 S 2.407 3.593 26 O -0.945 6.945 27 O -0.941 6.941 28 C -0.584 4.584 29 C 0.050 3.950 30 H 0.263 0.737 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.124 0.876 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 -22.941 -2.910 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.011 4.011 10 C 0.004 3.996 11 O -0.265 6.265 12 C 0.306 3.694 13 O -0.385 6.385 14 C 0.033 3.967 15 H 0.111 0.889 16 C -0.091 4.091 17 C -0.111 4.111 18 C -0.137 4.137 19 C -0.129 4.129 20 C -0.144 4.144 21 C -0.109 4.109 22 N -0.264 5.264 23 C -0.068 4.068 24 C -0.723 4.723 25 S 2.590 3.410 26 O -0.942 6.942 27 O -0.938 6.938 28 C -0.714 4.714 29 C -0.078 4.078 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.150 0.850 40 H 0.081 0.919 41 H 0.127 0.873 42 H 0.162 0.838 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.157 0.843 46 H 0.142 0.858 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.045 -23.446 -2.842 23.640 hybrid contribution -0.120 1.659 0.120 1.668 sum 0.925 -21.786 -2.722 21.975 Atomic orbital electron populations 1.69974 1.06093 1.26937 1.49762 1.24976 0.94911 0.99400 0.94814 0.86426 0.80067 0.83148 0.77744 1.19576 1.20798 1.20806 1.20999 0.93188 0.90060 1.52216 0.92226 1.19164 0.94148 0.88955 0.98872 1.23691 0.96421 0.78481 1.00964 1.86528 1.42227 1.15551 1.82157 1.22920 0.86401 0.86810 0.73283 1.90588 1.15283 1.87704 1.44963 1.19882 0.91113 0.87272 0.98405 0.88875 1.19212 0.93296 1.03102 0.93509 1.21050 0.92554 0.98017 0.99462 1.21122 1.00119 0.99923 0.92561 1.21231 0.95184 0.98741 0.97757 1.21154 0.93961 1.00920 0.98324 1.21092 1.00569 0.97691 0.91514 1.60766 1.21653 1.02222 1.41718 1.21859 0.95934 0.85790 1.03182 1.30178 1.15409 1.07267 1.19404 1.08328 0.77018 0.78510 0.77186 1.93595 1.49480 1.70022 1.81063 1.93592 1.76905 1.79106 1.44213 1.30106 1.06868 1.21769 1.12668 1.22098 0.90567 1.05090 0.90040 0.92726 0.95339 0.95391 0.92263 0.92217 0.85443 0.85664 0.86041 0.85939 0.85029 0.91918 0.87305 0.83823 0.84294 0.83624 0.84331 0.85830 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.63 5.40 37.16 0.20 1.83 16 11 O -0.35 -6.49 10.14 -39.25 -0.40 -6.89 16 12 C 0.46 7.28 6.80 36.01 0.24 7.52 16 13 O -0.50 -8.55 13.73 -18.75 -0.26 -8.80 16 14 C 0.14 1.62 2.22 -70.02 -0.16 1.46 16 15 H 0.09 0.89 8.00 -51.93 -0.42 0.48 16 16 C -0.09 -1.00 3.42 -104.63 -0.36 -1.36 16 17 C -0.09 -0.98 9.67 -39.58 -0.38 -1.36 16 18 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 19 C -0.11 -1.03 10.05 -39.58 -0.40 -1.43 16 20 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 21 C -0.09 -0.96 8.14 -39.58 -0.32 -1.28 16 22 N -0.54 -5.16 3.45 -229.93 -0.79 -5.95 16 23 C 0.06 0.44 4.98 -3.96 -0.02 0.42 16 24 C -0.59 -3.58 6.58 37.25 0.25 -3.34 16 25 S 2.41 20.28 5.34 -107.50 -0.57 19.70 16 26 O -0.94 -11.15 18.11 -57.81 -1.05 -12.19 16 27 O -0.94 -10.77 18.10 -57.81 -1.05 -11.82 16 28 C -0.58 -4.62 6.57 37.25 0.24 -4.37 16 29 C 0.05 0.48 4.93 -3.97 -0.02 0.46 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 34 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 35 H 0.13 1.20 8.04 -52.49 -0.42 0.78 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.13 1.36 7.71 -52.49 -0.40 0.95 16 40 H 0.06 0.42 7.93 -51.93 -0.41 0.00 16 41 H 0.11 0.77 5.68 -51.93 -0.29 0.47 16 42 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.15 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.12 1.45 5.21 -51.92 -0.27 1.18 16 47 H 0.06 0.48 7.93 -51.93 -0.41 0.07 16 LS Contribution 397.63 15.07 5.99 5.99 Total: -1.00 -35.75 397.63 -11.31 -47.05 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.82 Total: -0.70 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -2.07 Total: -17.28 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: -0.06 Total: -31.06 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -2.75 Total: -39.71 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 20.28 SS G_CDS: -0.57 Total: 19.70 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.75 -11.31 -47.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069616944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.407 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds