Wall clock time and date at job start Tue Mar 31 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99458 * 2 1 4 4 H 1.48497 * 109.47073 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46947 * 299.99639 * 3 2 1 6 6 H 1.48494 * 109.47067 * 59.99705 * 3 2 1 7 7 C 1.37871 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46914 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.46608 * 179.97438 * 10 9 7 12 12 C 1.34227 * 116.99412 * 179.97438 * 11 10 9 13 13 O 1.20830 * 120.00329 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99625 * 180.02562 * 12 11 10 15 15 H 1.09000 * 109.47004 * 299.99852 * 14 12 11 16 16 C 1.50693 * 109.47087 * 60.00013 * 14 12 11 17 17 C 1.38233 * 120.00207 * 259.99511 * 16 14 12 18 18 C 1.38234 * 120.00037 * 179.72405 * 17 16 14 19 19 C 1.38234 * 120.00240 * 0.26327 * 18 17 16 20 20 C 1.38238 * 119.99693 * 359.97438 * 19 18 17 21 21 C 1.38234 * 120.00067 * 0.02562 * 20 19 18 22 22 N 1.46903 * 109.47000 * 180.02562 * 14 12 11 23 23 C 1.46469 * 110.99959 * 185.85506 * 22 14 12 24 24 C 1.53183 * 109.90027 * 162.99752 * 23 22 14 25 25 S 1.81819 * 108.67533 * 62.63796 * 24 23 22 26 26 O 1.42099 * 108.69889 * 193.42677 * 25 24 23 27 27 O 1.42101 * 108.82824 * 61.98848 * 25 24 23 28 28 C 1.81810 * 101.01930 * 307.68386 * 25 24 23 29 29 C 1.46467 * 111.00109 * 60.00256 * 22 14 12 30 30 H 0.96998 * 120.00906 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47167 * 59.99724 * 9 7 2 32 32 H 1.09001 * 109.46839 * 300.00137 * 9 7 2 33 33 H 1.08999 * 109.47217 * 60.00128 * 10 9 7 34 34 H 1.08991 * 109.47283 * 299.99839 * 10 9 7 35 35 H 1.08002 * 120.00157 * 0.02562 * 17 16 14 36 36 H 1.07999 * 120.00009 * 180.28389 * 18 17 16 37 37 H 1.07997 * 120.00460 * 180.02562 * 19 18 17 38 38 H 1.08001 * 119.99624 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.00008 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.40429 * 283.13376 * 23 22 14 41 41 H 1.09007 * 109.39829 * 42.86854 * 23 22 14 42 42 H 1.08993 * 109.60395 * 302.88195 * 24 23 22 43 43 H 1.08999 * 109.60286 * 182.39061 * 24 23 22 44 44 H 1.09001 * 109.60023 * 292.55812 * 28 25 24 45 45 H 1.09000 * 109.60079 * 172.07946 * 28 25 24 46 46 H 1.09011 * 109.39944 * 317.12569 * 29 22 14 47 47 H 1.08990 * 109.40615 * 76.95549 * 29 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3467 0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8901 2.3965 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6620 0.0018 11 8 1.5196 -4.9195 0.0024 12 6 2.2508 -6.0451 0.0030 13 8 3.4574 -5.9818 0.0035 14 6 1.5667 -7.3879 0.0031 15 1 0.9435 -7.4782 0.8929 16 6 0.7062 -7.5134 -1.2276 17 6 -0.6566 -7.2977 -1.1431 18 6 -1.4451 -7.4072 -2.2733 19 6 -0.8716 -7.7377 -3.4868 20 6 0.4906 -7.9581 -3.5704 21 6 1.2790 -7.8487 -2.4402 22 7 2.5785 -8.4529 0.0045 23 6 1.9540 -9.7705 -0.1349 24 6 3.0048 -10.8041 -0.5519 25 16 4.2536 -10.9280 0.7638 26 8 5.3778 -11.6360 0.2596 27 8 3.6226 -11.3804 1.9539 28 6 4.7112 -9.1811 0.9742 29 6 3.4347 -8.3621 1.1893 30 1 -0.4851 0.8399 -0.0004 31 1 0.6248 -2.5571 -0.8896 32 1 0.6242 -2.5567 0.8903 33 1 2.8715 -3.6038 0.8923 34 1 2.8728 -3.6046 -0.8876 35 1 -1.1046 -7.0389 -0.1951 36 1 -2.5091 -7.2342 -2.2082 37 1 -1.4875 -7.8228 -4.3699 38 1 0.9387 -8.2159 -4.5186 39 1 2.3433 -8.0205 -2.5056 40 1 1.5141 -10.0653 0.8178 41 1 1.1726 -9.7223 -0.8935 42 1 3.4812 -10.4875 -1.4796 43 1 2.5275 -11.7735 -0.6953 44 1 5.2262 -8.8278 0.0809 45 1 5.3637 -9.0758 1.8410 46 1 3.6990 -7.3193 1.3659 47 1 2.8981 -8.7510 2.0546 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069616944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:00 Heat of formation + Delta-G solvation = -134.183352 kcal Electronic energy + Delta-G solvation = -31666.905891 eV Core-core repulsion = 27327.729266 eV Total energy + Delta-G solvation = -4339.176625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.133 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.05694 -40.29055 -39.06890 -38.04751 -37.45509 -37.11276 -35.46912 -34.09189 -32.88600 -32.27308 -31.75376 -30.67993 -28.04208 -26.65412 -25.21668 -23.54235 -23.45911 -22.80341 -22.55023 -21.38385 -19.80460 -19.06259 -18.35928 -18.05580 -18.00613 -17.56443 -17.36115 -17.28232 -16.76062 -16.54376 -16.38885 -16.33733 -15.87304 -15.36123 -15.18453 -15.04185 -14.50889 -14.39585 -14.19354 -14.08722 -13.90372 -13.60028 -13.41666 -13.30840 -13.27759 -13.18319 -13.10536 -13.01720 -12.94347 -12.78271 -12.59135 -12.58032 -12.11743 -11.91758 -11.82669 -11.72363 -11.50761 -11.45942 -11.33541 -10.96748 -10.62561 -9.77828 -9.72288 -9.65329 -8.27971 -6.40892 -0.95460 0.30702 0.54132 1.11688 1.39509 1.40659 1.48701 1.56090 1.68999 2.36126 2.45100 2.67672 2.92659 3.03121 3.06732 3.37826 3.58133 3.61981 3.70344 3.83523 3.94387 4.10524 4.14017 4.20342 4.21124 4.23760 4.24712 4.28851 4.35654 4.62181 4.65019 4.68904 4.73860 4.74908 4.84059 4.93019 5.03163 5.18359 5.23145 5.38173 5.46178 5.53608 5.56269 5.66159 5.68043 5.73637 5.78181 6.05704 6.10936 6.69015 6.74078 7.29099 8.84679 Molecular weight = 367.13amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.002590 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.641625 B =10809.835147 C =12691.955830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.094 3.906 11 O -0.359 6.359 12 C 0.461 3.539 13 O -0.513 6.513 14 C 0.151 3.849 15 H 0.112 0.888 16 C -0.103 4.103 17 C -0.106 4.106 18 C -0.128 4.128 19 C -0.114 4.114 20 C -0.130 4.130 21 C -0.100 4.100 22 N -0.541 5.541 23 C 0.056 3.944 24 C -0.574 4.574 25 S 2.419 3.581 26 O -0.981 6.981 27 O -0.974 6.974 28 C -0.580 4.580 29 C 0.045 3.955 30 H 0.268 0.732 31 H 0.004 0.996 32 H 0.007 0.993 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.073 0.927 41 H 0.118 0.882 42 H 0.160 0.840 43 H 0.167 0.833 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.101 0.899 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.184 -23.627 -3.859 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.082 0.918 9 C -0.004 4.004 10 C 0.021 3.979 11 O -0.275 6.275 12 C 0.304 3.696 13 O -0.402 6.402 14 C 0.042 3.958 15 H 0.129 0.871 16 C -0.103 4.103 17 C -0.124 4.124 18 C -0.146 4.146 19 C -0.132 4.132 20 C -0.148 4.148 21 C -0.118 4.118 22 N -0.267 5.267 23 C -0.071 4.071 24 C -0.707 4.707 25 S 2.606 3.394 26 O -0.978 6.978 27 O -0.971 6.971 28 C -0.711 4.711 29 C -0.083 4.083 30 H 0.077 0.923 31 H 0.022 0.978 32 H 0.025 0.975 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.092 0.908 41 H 0.136 0.864 42 H 0.178 0.822 43 H 0.185 0.815 44 H 0.168 0.832 45 H 0.168 0.832 46 H 0.119 0.881 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.044 -24.172 -3.770 24.487 hybrid contribution -0.175 1.824 0.362 1.868 sum 0.869 -22.348 -3.408 22.623 Atomic orbital electron populations 1.70089 1.07750 1.28189 1.50456 1.25923 0.95807 1.03291 0.94121 0.85316 0.78950 0.78281 0.78012 1.18651 1.20112 1.20077 1.21391 0.93644 0.91257 1.52340 0.91795 1.18946 0.94283 0.90563 0.96590 1.23136 0.94964 0.78950 1.00869 1.86512 1.42488 1.15607 1.82912 1.23828 0.86426 0.87212 0.72156 1.90581 1.16144 1.87902 1.45539 1.19884 0.91267 0.85013 0.99614 0.87087 1.19230 0.93444 1.04164 0.93483 1.21244 0.92653 0.98265 1.00230 1.21407 1.01010 0.99642 0.92563 1.21556 0.95450 0.97797 0.98375 1.21432 0.94158 1.00378 0.98803 1.21200 1.00770 0.98048 0.91766 1.60754 1.21464 1.02760 1.41758 1.22001 0.96361 0.84626 1.04157 1.30067 1.13928 1.08452 1.18229 1.07792 0.76673 0.77981 0.77003 1.93547 1.51550 1.71171 1.81575 1.93546 1.77304 1.79889 1.46377 1.30076 1.06514 1.20925 1.13589 1.22091 0.91447 1.04016 0.90728 0.92344 0.97750 0.97470 0.92015 0.92505 0.84904 0.84147 0.83893 0.84030 0.85011 0.90850 0.86420 0.82207 0.81543 0.83172 0.83176 0.88110 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.51 13.29 21.44 0.28 -54.23 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.97 42.96 29.54 68.60 2.03 44.98 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -30.53 9.11 25.60 0.23 -30.29 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.75 5.35 29.85 0.16 1.91 16 10 C 0.09 4.06 5.40 71.98 0.39 4.45 16 11 O -0.36 -13.56 10.14 -51.38 -0.52 -14.08 16 12 C 0.46 14.40 6.80 71.24 0.48 14.88 16 13 O -0.51 -17.67 13.73 21.95 0.30 -17.37 16 14 C 0.15 3.29 2.22 43.42 0.10 3.38 16 15 H 0.11 1.99 8.00 -2.39 -0.02 1.98 16 16 C -0.10 -2.15 3.42 -19.87 -0.07 -2.22 16 17 C -0.11 -2.12 9.67 22.27 0.22 -1.90 16 18 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 19 C -0.11 -1.87 10.05 22.27 0.22 -1.65 16 20 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 21 C -0.10 -1.95 8.14 22.27 0.18 -1.77 16 22 N -0.54 -9.58 3.45 -881.36 -3.04 -12.62 16 23 C 0.06 0.69 4.98 86.45 0.43 1.12 16 24 C -0.57 -5.41 6.58 72.04 0.47 -4.94 16 25 S 2.42 38.05 5.34 -56.49 -0.30 37.75 16 26 O -0.98 -22.57 18.11 -127.39 -2.31 -24.88 16 27 O -0.97 -21.51 18.10 -127.39 -2.31 -23.81 16 28 C -0.58 -8.68 6.57 72.04 0.47 -8.21 16 29 C 0.05 0.83 4.93 86.45 0.43 1.25 16 30 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 34 H 0.06 2.46 8.13 -2.39 -0.02 2.44 16 35 H 0.13 2.40 8.04 -2.91 -0.02 2.38 16 36 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 38 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 39 H 0.13 2.51 7.71 -2.91 -0.02 2.49 16 40 H 0.07 0.79 7.93 -2.39 -0.02 0.77 16 41 H 0.12 1.34 5.68 -2.38 -0.01 1.32 16 42 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.17 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.10 2.36 5.21 -2.38 -0.01 2.34 16 47 H 0.07 1.09 7.93 -2.39 -0.02 1.07 16 Total: -1.00 -77.49 397.63 -0.26 -77.76 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.97 Total: 13.65 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 4.63 Total: -27.15 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -2.76 Total: -66.85 kcal Atomic # 8 Polarization: -75.30 SS G_CDS: -4.83 Total: -80.14 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 38.05 SS G_CDS: -0.30 Total: 37.75 kcal Total: -77.49 -0.26 -77.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069616944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.427 kcal (2) G-P(sol) polarization free energy of solvation -77.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds