Wall clock time and date at job start Tue Mar 31 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39759 * 120.09455 * 147.56486 * 3 2 1 5 5 C 1.37730 * 119.90444 * 180.02562 * 4 3 2 6 6 C 1.38970 * 120.09610 * 0.02562 * 5 4 3 7 7 O 1.35757 * 119.90293 * 180.02562 * 6 5 4 8 8 C 1.42904 * 116.99712 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46972 * 180.02562 * 8 7 6 10 10 O 1.21278 * 120.00056 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99823 * 180.02562 * 9 8 7 12 12 C 1.39581 * 119.99990 * 179.97438 * 11 9 8 13 13 N 1.32276 * 119.72745 * 0.26696 * 12 11 9 14 14 C 1.31949 * 121.69079 * 180.30946 * 13 12 11 15 15 C 1.38093 * 120.95747 * 359.70619 * 14 13 12 16 16 C 1.38775 * 119.35013 * 359.97438 * 15 14 13 17 17 C 1.38801 * 118.45054 * 359.97438 * 16 15 14 18 18 O 1.35973 * 120.50125 * 179.97438 * 17 16 15 19 19 C 1.42906 * 116.99587 * 0.02562 * 18 17 16 20 20 C 1.53006 * 109.46748 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46866 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00270 * 180.02562 * 21 20 19 24 24 N 1.31522 * 119.99834 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00496 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47574 * 89.99780 * 25 23 21 27 27 H 1.48500 * 109.47346 * 209.99892 * 25 23 21 28 28 H 1.48499 * 109.47067 * 329.99541 * 25 23 21 29 29 C 1.38955 * 120.18739 * 0.27073 * 6 5 4 30 30 C 1.37739 * 120.09632 * 359.45474 * 29 6 5 31 31 H 1.07995 * 120.04838 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.95548 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.47291 * 59.99809 * 8 7 6 34 34 H 1.09002 * 109.47170 * 299.99855 * 8 7 6 35 35 H 0.97000 * 120.00150 * 359.97438 * 11 9 8 36 36 H 1.08000 * 119.52722 * 179.72569 * 14 13 12 37 37 H 1.07998 * 120.32698 * 180.02562 * 15 14 13 38 38 H 1.08002 * 120.77560 * 180.02562 * 16 15 14 39 39 H 1.09000 * 109.47490 * 59.99648 * 19 18 17 40 40 H 1.09001 * 109.47232 * 299.99002 * 19 18 17 41 41 H 1.08993 * 109.46955 * 299.99993 * 20 19 18 42 42 H 1.09000 * 109.47050 * 59.99822 * 20 19 18 43 43 H 0.96992 * 120.00032 * 180.02562 * 24 23 21 44 44 H 1.08003 * 119.95228 * 179.70311 * 29 6 5 45 45 H 1.08004 * 120.04556 * 180.25107 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 1.0215 -0.6485 5 6 4.6456 1.0180 -0.6465 6 6 5.3389 0.0010 -0.0013 7 8 6.6965 0.0017 -0.0014 8 6 7.3457 -1.0736 0.6801 9 6 8.8397 -0.9058 0.5749 10 8 9.3028 0.0411 -0.0249 11 7 9.6610 -1.8085 1.1466 12 6 11.0448 -1.6534 1.0488 13 7 11.5441 -0.6155 0.3982 14 6 12.8454 -0.4342 0.2769 15 6 13.7417 -1.3248 0.8339 16 6 13.2630 -2.4251 1.5312 17 6 11.8895 -2.5901 1.6439 18 8 11.3751 -3.6534 2.3175 19 6 12.3084 -4.5712 2.8908 20 6 11.5490 -5.6924 3.6031 21 6 12.5332 -6.6606 4.2072 22 1 13.5942 -6.4933 4.0941 23 6 12.0793 -7.7607 4.9035 24 7 10.7873 -7.9647 5.0409 25 14 13.2991 -8.9605 5.6529 26 1 13.6294 -8.5317 7.0358 27 1 12.7008 -10.3192 5.6856 28 1 14.5371 -8.9845 4.8331 29 6 4.6466 -1.0193 0.6394 30 6 3.2692 -1.0204 0.6472 31 1 2.7303 1.8120 -1.1505 32 1 5.1876 1.8063 -1.1478 33 1 7.0533 -2.0206 0.2265 34 1 7.0529 -1.0679 1.7300 35 1 9.2907 -2.5660 1.6261 36 1 13.2150 0.4234 -0.2657 37 1 14.8048 -1.1663 0.7287 38 1 13.9434 -3.1359 1.9764 39 1 12.9393 -4.0470 3.6087 40 1 12.9303 -4.9966 2.1032 41 1 10.9274 -5.2668 4.3907 42 1 10.9179 -6.2166 2.8855 43 1 10.4679 -8.7384 5.5310 44 1 5.1892 -1.8103 1.1356 45 1 2.7319 -1.8117 1.1489 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069617804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:53 Heat of formation + Delta-G solvation = -4.702434 kcal Electronic energy + Delta-G solvation = -30109.112185 eV Core-core repulsion = 25672.399074 eV Total energy + Delta-G solvation = -4436.713111 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.15972 -40.68697 -39.37659 -38.21382 -37.79297 -36.45085 -34.97897 -33.53913 -31.95513 -31.73001 -31.15352 -30.72268 -29.62709 -28.28511 -25.50433 -24.15313 -23.76518 -23.21363 -22.77578 -21.20602 -20.46440 -19.39638 -18.82579 -18.51955 -17.73042 -17.19956 -16.84599 -16.46821 -16.20611 -15.81178 -15.75590 -15.10684 -15.02201 -14.90267 -14.64012 -14.49555 -14.30074 -14.24793 -14.05277 -14.00560 -13.60627 -13.36581 -12.93551 -12.87056 -12.70408 -12.54015 -12.46046 -12.11722 -12.01274 -11.49245 -11.45554 -11.13389 -11.04252 -10.86163 -10.73715 -10.38754 -10.12542 -9.84144 -9.65545 -9.47852 -9.33134 -9.16911 -8.75910 -8.57638 -7.79406 -6.23556 -4.28609 0.35970 0.77059 1.08251 1.35053 2.03393 2.31707 2.44023 2.52916 3.12677 3.18801 3.24873 3.27030 3.41206 3.43094 3.52656 3.89449 4.03901 4.22087 4.29078 4.33575 4.49939 4.61956 4.63111 4.64427 4.86436 4.88991 4.98149 5.02219 5.13631 5.15960 5.37386 5.41363 5.49161 5.70020 5.77547 5.80600 5.82448 5.95524 6.01891 6.08799 6.20777 6.45722 6.49989 6.75020 7.05133 7.13773 7.25940 7.45401 7.55378 7.76740 7.88468 8.08199 8.17662 8.76521 9.36764 10.87804 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.008112 B = 0.001814 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3450.881701 B =15432.553521 C =18857.667948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.260 3.740 3 C -0.075 4.075 4 C -0.029 4.029 5 C -0.150 4.150 6 C 0.165 3.835 7 O -0.282 6.282 8 C 0.039 3.961 9 C 0.506 3.494 10 O -0.455 6.455 11 N -0.647 5.647 12 C 0.327 3.673 13 N -0.444 5.444 14 C 0.076 3.924 15 C -0.156 4.156 16 C -0.148 4.148 17 C 0.071 3.929 18 O -0.316 6.316 19 C 0.066 3.934 20 C 0.027 3.973 21 C -0.530 4.530 22 H 0.059 0.941 23 C 0.062 3.938 24 N -0.889 5.889 25 Si 0.899 3.101 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.273 1.273 29 C -0.213 4.213 30 C -0.024 4.024 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.426 0.574 36 H 0.158 0.842 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.264 0.736 44 H 0.143 0.857 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 15.812 -10.029 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.055 4.055 3 C -0.079 4.079 4 C -0.049 4.049 5 C -0.168 4.168 6 C 0.117 3.883 7 O -0.193 6.193 8 C -0.040 4.040 9 C 0.289 3.711 10 O -0.323 6.323 11 N -0.297 5.297 12 C 0.094 3.906 13 N -0.159 5.159 14 C -0.081 4.081 15 C -0.177 4.177 16 C -0.174 4.174 17 C 0.019 3.981 18 O -0.228 6.228 19 C -0.008 4.008 20 C -0.010 4.010 21 C -0.568 4.568 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.526 5.526 25 Si 0.726 3.274 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.197 1.197 29 C -0.232 4.232 30 C -0.045 4.045 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.264 0.736 36 H 0.175 0.825 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.160 0.840 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.907 17.073 -10.823 22.090 hybrid contribution 1.724 -2.072 1.316 3.000 sum -7.184 15.001 -9.507 19.158 Atomic orbital electron populations 1.81277 1.12108 1.07847 1.08866 1.25645 0.92556 0.93756 0.93579 1.15927 0.84442 0.99996 1.07510 1.20974 0.92977 0.96110 0.94841 1.20385 0.93075 0.99704 1.03658 1.19350 0.82183 0.93783 0.92979 1.86143 1.16005 1.46274 1.70860 1.22552 0.90956 0.91100 0.99354 1.20036 0.87476 0.83273 0.80292 1.90855 1.76312 1.28301 1.36811 1.43169 1.03109 1.28499 1.54959 1.17680 0.83597 0.91674 0.97604 1.67590 1.15652 1.17538 1.15074 1.22419 0.87079 0.99430 0.99165 1.21927 1.01360 0.95175 0.99256 1.21632 0.93723 1.00152 1.01920 1.19563 0.92218 0.90112 0.96166 1.86093 1.38045 1.32907 1.65804 1.23419 0.92166 0.89397 0.95833 1.19129 0.96234 0.90260 0.95421 1.20942 0.92785 1.08099 1.34938 0.92320 1.24975 0.95356 0.97788 0.95950 1.69955 1.12746 1.28886 1.41059 0.86481 0.81040 0.80237 0.79610 1.20448 1.21001 1.19732 1.21274 0.94945 1.00925 1.06075 1.20983 0.93338 0.95896 0.94278 0.84188 0.83732 0.87985 0.87992 0.73609 0.82477 0.84650 0.83611 0.92870 0.92862 0.95335 0.95330 0.92611 0.83967 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.75 18.54 41.84 0.78 -3.97 16 2 C 0.26 2.22 15.33 -22.48 -0.34 1.88 16 3 C -0.07 -0.49 5.74 -106.84 -0.61 -1.10 16 4 C -0.03 -0.16 9.75 -39.20 -0.38 -0.54 16 5 C -0.15 -0.97 9.97 -39.50 -0.39 -1.36 16 6 C 0.16 1.23 6.69 -39.04 -0.26 0.97 16 7 O -0.28 -2.70 9.66 -38.89 -0.38 -3.07 16 8 C 0.04 0.30 5.21 36.01 0.19 0.49 16 9 C 0.51 6.17 7.87 -10.99 -0.09 6.09 16 10 O -0.46 -7.46 14.75 -14.35 -0.21 -7.67 16 11 N -0.65 -7.99 5.39 -11.29 -0.06 -8.05 16 12 C 0.33 4.88 7.45 -154.43 -1.15 3.73 16 13 N -0.44 -6.84 7.88 -12.22 -0.10 -6.94 16 14 C 0.08 0.94 11.17 -17.55 -0.20 0.75 16 15 C -0.16 -1.76 10.10 -39.44 -0.40 -2.16 16 16 C -0.15 -1.96 9.14 -39.17 -0.36 -2.32 16 17 C 0.07 1.07 6.72 -38.91 -0.26 0.81 16 18 O -0.32 -5.28 9.39 -19.66 -0.18 -5.47 16 19 C 0.07 1.21 4.70 37.16 0.17 1.38 16 20 C 0.03 0.62 5.34 -27.88 -0.15 0.48 16 21 C -0.53 -13.64 9.11 -34.44 -0.31 -13.96 16 22 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 23 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 24 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 25 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 29 C -0.21 -1.25 9.01 -39.50 -0.36 -1.60 16 30 C -0.02 -0.14 9.75 -39.20 -0.38 -0.52 16 31 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 32 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.10 0.52 7.64 -51.93 -0.40 0.13 16 34 H 0.10 0.52 7.66 -51.93 -0.40 0.13 16 35 H 0.43 4.32 8.04 -40.82 -0.33 3.99 16 36 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.15 1.79 6.44 -52.49 -0.34 1.45 16 39 H 0.05 0.93 7.70 -51.93 -0.40 0.53 16 40 H 0.05 0.93 7.70 -51.93 -0.40 0.53 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.14 0.55 6.28 -52.48 -0.33 0.23 16 45 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 LS Contribution 402.34 15.07 6.06 6.06 Total: -1.00 -34.32 402.34 -8.85 -43.17 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.09 Total: 0.31 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -5.38 Total: -5.44 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 1.35 Total: -42.99 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.77 Total: -16.21 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.32 -8.85 -43.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069617804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.468 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds