Wall clock time and date at job start Tue Mar 31 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31429 * 1 3 3 Si 1.86803 * 120.00019 * 2 1 4 4 H 1.48492 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47132 * 300.00093 * 3 2 1 6 6 H 1.48498 * 109.46986 * 60.00009 * 3 2 1 7 7 C 1.38883 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99844 * 185.46338 * 7 2 1 9 9 N 1.37142 * 120.00444 * 5.46918 * 7 2 1 10 10 C 1.34770 * 119.99959 * 233.63362 * 9 7 2 11 11 O 1.21287 * 119.99925 * 186.00126 * 10 9 7 12 12 C 1.50698 * 120.00230 * 6.00000 * 10 9 7 13 13 N 1.46501 * 109.47479 * 174.98345 * 12 10 9 14 14 C 1.35860 * 119.69462 * 89.99641 * 13 12 10 15 15 N 1.29830 * 123.36666 * 179.74018 * 14 13 12 16 16 C 1.35659 * 121.61428 * 0.26605 * 15 14 13 17 17 C 1.39640 * 121.64054 * 180.02562 * 16 15 14 18 18 C 1.37669 * 119.68549 * 179.97438 * 17 16 15 19 19 C 1.38887 * 120.81580 * 359.97438 * 18 17 16 20 20 C 1.37763 * 120.57460 * 359.97438 * 19 18 17 21 21 C 1.39343 * 119.50955 * 0.04872 * 20 19 18 22 22 C 1.35347 * 119.70184 * 270.26634 * 13 12 10 23 23 O 1.21725 * 121.29622 * 359.96129 * 22 13 12 24 24 C 1.39789 * 119.99895 * 53.62171 * 9 7 2 25 25 C 1.38994 * 120.06579 * 188.29850 * 24 9 7 26 26 C 1.38072 * 119.97376 * 179.75608 * 25 24 9 27 27 C 1.38292 * 120.09843 * 0.52150 * 26 25 24 28 28 C 1.38514 * 120.13582 * 359.75752 * 27 26 25 29 29 F 1.35093 * 119.99178 * 179.97438 * 28 27 26 30 30 C 1.38330 * 120.02393 * 359.96738 * 28 27 26 31 31 H 0.97001 * 119.99654 * 5.00059 * 1 2 3 32 32 H 1.09007 * 109.47159 * 54.98688 * 12 10 9 33 33 H 1.08994 * 109.47286 * 294.98731 * 12 10 9 34 34 H 1.08006 * 118.32079 * 0.03069 * 14 13 12 35 35 H 1.08001 * 120.15973 * 359.96001 * 17 16 15 36 36 H 1.08000 * 119.59353 * 179.97438 * 18 17 16 37 37 H 1.08005 * 119.71231 * 180.02562 * 19 18 17 38 38 H 1.07993 * 120.24568 * 180.02562 * 20 19 18 39 39 H 1.08000 * 120.01195 * 0.02562 * 25 24 9 40 40 H 1.08001 * 119.95024 * 180.25766 * 26 25 24 41 41 H 1.08005 * 119.93085 * 179.72610 * 27 26 25 42 42 H 1.07993 * 120.05148 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8895 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0087 -1.2028 -0.0005 8 1 3.0850 -1.2050 0.0885 9 7 1.3277 -2.3877 -0.1143 10 6 1.5135 -3.3620 0.7982 11 8 0.9968 -4.4478 0.6398 12 6 2.3633 -3.1023 2.0154 13 7 2.3121 -4.2658 2.9041 14 6 3.2223 -5.2640 2.7592 15 7 3.2458 -6.3234 3.5094 16 6 2.3424 -6.5107 4.5039 17 6 2.3675 -7.6496 5.3114 18 6 1.4313 -7.7984 6.3097 19 6 0.4607 -6.8286 6.5251 20 6 0.4161 -5.6958 5.7424 21 6 1.3543 -5.5263 4.7262 22 6 1.3550 -4.3392 3.8584 23 8 0.5307 -3.4543 3.9965 24 6 0.4406 -2.5849 -1.1765 25 6 -0.3769 -3.7087 -1.2016 26 6 -1.2560 -3.8990 -2.2492 27 6 -1.3167 -2.9785 -3.2795 28 6 -0.4998 -1.8601 -3.2618 29 9 -0.5612 -0.9630 -4.2700 30 6 0.3788 -1.6612 -2.2120 31 1 -0.4850 0.8369 -0.0732 32 1 1.9854 -2.2259 2.5421 33 1 3.3938 -2.9251 1.7079 34 1 3.9675 -5.1692 1.9831 35 1 3.1176 -8.4104 5.1534 36 1 1.4518 -8.6801 6.9331 37 1 -0.2649 -6.9633 7.3137 38 1 -0.3407 -4.9449 5.9148 39 1 -0.3277 -4.4305 -0.3997 40 1 -1.8940 -4.7702 -2.2661 41 1 -2.0022 -3.1324 -4.0998 42 1 1.0156 -0.7891 -2.1976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069629270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:25 Heat of formation + Delta-G solvation = -25.767514 kcal Electronic energy + Delta-G solvation = -32519.259679 eV Core-core repulsion = 27958.172813 eV Total energy + Delta-G solvation = -4561.086867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.112 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.79043 -42.76389 -41.49923 -39.62934 -38.93964 -38.39676 -36.92792 -35.32270 -33.84198 -32.44468 -31.41118 -31.12153 -30.94331 -28.98961 -27.14110 -25.80513 -25.13905 -23.61925 -23.36763 -22.94333 -21.50561 -20.11308 -19.92793 -19.56742 -18.78339 -18.13345 -17.62246 -17.22515 -16.93090 -16.78329 -16.60136 -16.45372 -16.14415 -16.06884 -16.02563 -15.82311 -15.62855 -14.98612 -14.81892 -14.81151 -14.56111 -14.37324 -13.99337 -13.81781 -13.48193 -13.26575 -13.18069 -12.95695 -12.93862 -12.92945 -12.76620 -12.69191 -12.15165 -11.92658 -11.43902 -11.29714 -11.17261 -11.03005 -10.73930 -10.28110 -10.13902 -9.54785 -9.08581 -8.88431 -8.28371 -6.52059 -0.45134 -0.19825 0.37994 0.48584 1.12516 1.25324 1.40056 1.45678 1.57771 1.74748 1.82052 2.19235 2.58444 2.83049 2.98500 3.05265 3.12588 3.25804 3.50549 3.69178 3.74739 3.86971 3.96176 4.10221 4.12277 4.24277 4.27731 4.35950 4.39944 4.55077 4.60989 4.67063 4.84541 4.91739 5.08149 5.14926 5.20781 5.29773 5.32490 5.33871 5.40236 5.55233 5.58764 5.64643 5.81837 5.84252 6.12036 6.38789 6.55071 6.82204 6.90820 7.20455 7.60566 8.58338 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.003032 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.617253 B = 9231.225653 C =10437.408703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.019 3.981 3 Si 0.980 3.020 4 H -0.237 1.237 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.387 4.387 8 H 0.124 0.876 9 N -0.389 5.389 10 C 0.472 3.528 11 O -0.577 6.577 12 C 0.105 3.895 13 N -0.528 5.528 14 C 0.387 3.613 15 N -0.536 5.536 16 C 0.135 3.865 17 C -0.117 4.117 18 C -0.061 4.061 19 C -0.132 4.132 20 C -0.064 4.064 21 C -0.222 4.222 22 C 0.534 3.466 23 O -0.554 6.554 24 C 0.197 3.803 25 C -0.209 4.209 26 C -0.079 4.079 27 C -0.195 4.195 28 C 0.086 3.914 29 F -0.152 7.152 30 C -0.155 4.155 31 H 0.273 0.727 32 H 0.112 0.888 33 H 0.169 0.831 34 H 0.239 0.761 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.164 0.836 38 H 0.124 0.876 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.731 -10.970 7.641 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.189 4.189 3 Si 0.802 3.198 4 H -0.160 1.160 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.513 4.513 8 H 0.141 0.859 9 N -0.096 5.096 10 C 0.264 3.736 11 O -0.462 6.462 12 C -0.020 4.020 13 N -0.248 5.248 14 C 0.101 3.899 15 N -0.256 5.256 16 C 0.026 3.974 17 C -0.136 4.136 18 C -0.080 4.080 19 C -0.150 4.150 20 C -0.084 4.084 21 C -0.228 4.228 22 C 0.328 3.672 23 O -0.431 6.431 24 C 0.099 3.901 25 C -0.229 4.229 26 C -0.098 4.098 27 C -0.215 4.215 28 C 0.066 3.934 29 F -0.131 7.131 30 C -0.177 4.177 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.187 0.813 34 H 0.255 0.745 35 H 0.177 0.823 36 H 0.194 0.806 37 H 0.182 0.818 38 H 0.142 0.858 39 H 0.171 0.829 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.368 -11.462 7.813 15.263 hybrid contribution -0.921 2.457 -0.482 2.668 sum 5.446 -9.004 7.331 12.825 Atomic orbital electron populations 1.70091 1.08132 1.29417 1.43339 1.26473 0.95743 1.03475 0.93191 0.85061 0.80139 0.77049 0.77526 1.15967 1.20892 1.20855 1.19962 0.92908 0.81678 1.56734 0.85870 1.41192 1.35782 1.14414 1.18247 1.21502 0.83298 0.84183 0.84641 1.90336 1.52027 1.26342 1.77470 1.21606 1.04395 0.87712 0.88243 1.46369 1.27734 1.21182 1.29483 1.25514 0.88905 0.80783 0.94690 1.68702 1.27341 1.20082 1.09465 1.19220 0.90095 0.94538 0.93529 1.21212 1.01265 0.95990 0.95157 1.21772 0.91601 0.99195 0.95422 1.21560 1.00415 0.92779 1.00296 1.21173 0.95901 0.98638 0.92643 1.20707 1.03371 0.96412 1.02293 1.18990 0.80223 0.87269 0.80669 1.90852 1.38615 1.42047 1.71629 1.18147 0.91544 0.93131 0.87283 1.22452 0.98237 1.00052 1.02194 1.21077 0.97171 0.99044 0.92508 1.21104 1.02907 0.94827 1.02639 1.17610 0.99778 0.89564 0.86441 1.91396 1.95809 1.67188 1.58659 1.20586 1.02279 1.01335 0.93523 0.91744 0.86952 0.81344 0.74548 0.82297 0.80599 0.81829 0.85795 0.82884 0.82905 0.83016 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.17 11.62 21.65 0.25 -45.92 16 2 C 0.02 0.87 3.85 84.91 0.33 1.20 16 3 Si 0.98 36.66 29.56 68.60 2.03 38.69 16 4 H -0.24 -7.83 7.11 99.48 0.71 -7.12 16 5 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.39 -17.30 7.40 84.02 0.62 -16.68 16 8 H 0.12 4.75 7.78 -2.91 -0.02 4.73 16 9 N -0.39 -18.29 2.66 -458.92 -1.22 -19.51 16 10 C 0.47 20.62 7.59 87.66 0.67 21.29 16 11 O -0.58 -27.26 12.94 -3.05 -0.04 -27.30 16 12 C 0.11 3.61 4.66 85.63 0.40 4.01 16 13 N -0.53 -17.57 2.11 -651.91 -1.37 -18.94 16 14 C 0.39 10.20 11.38 180.19 2.05 12.25 16 15 N -0.54 -14.82 10.37 -191.93 -1.99 -16.81 16 16 C 0.14 3.86 6.63 39.63 0.26 4.12 16 17 C -0.12 -2.40 10.03 22.47 0.23 -2.18 16 18 C -0.06 -0.95 10.00 22.29 0.22 -0.73 16 19 C -0.13 -2.47 10.02 22.31 0.22 -2.25 16 20 C -0.06 -1.79 9.68 22.42 0.22 -1.57 16 21 C -0.22 -7.34 5.89 -19.97 -0.12 -7.45 16 22 C 0.53 20.92 7.66 86.46 0.66 21.58 16 23 O -0.55 -26.08 16.33 -4.43 -0.07 -26.15 16 24 C 0.20 9.57 5.71 38.21 0.22 9.79 16 25 C -0.21 -9.64 8.96 22.41 0.20 -9.44 16 26 C -0.08 -3.05 10.04 22.24 0.22 -2.83 16 27 C -0.20 -7.31 10.02 22.35 0.22 -7.09 16 28 C 0.09 3.68 7.30 22.36 0.16 3.85 16 29 F -0.15 -6.24 17.27 44.97 0.78 -5.47 16 30 C -0.16 -7.38 7.84 22.45 0.18 -7.20 16 31 H 0.27 13.86 8.32 -92.71 -0.77 13.09 16 32 H 0.11 4.38 7.38 -2.38 -0.02 4.37 16 33 H 0.17 3.97 7.93 -2.39 -0.02 3.95 16 34 H 0.24 3.94 7.99 -2.91 -0.02 3.92 16 35 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 38 H 0.12 3.62 7.83 -2.91 -0.02 3.60 16 39 H 0.15 7.53 4.75 -42.99 -0.20 7.33 16 40 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.15 4.55 8.06 -2.91 -0.02 4.53 16 42 H 0.12 6.04 6.02 -2.91 -0.02 6.02 16 Total: -1.00 -72.73 367.11 6.23 -66.50 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: 0.91 Total: 34.24 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 6.97 Total: 20.68 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -4.33 Total: -101.18 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -0.11 Total: -53.46 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.78 Total: -5.47 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Total: -72.73 6.23 -66.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.731 kcal (2) G-P(sol) polarization free energy of solvation -72.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds