Wall clock time and date at job start Tue Mar 31 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30179 * 126.80097 * 2 1 4 4 O 1.20914 * 111.60307 * 180.02562 * 3 2 1 5 5 C 1.34043 * 111.56958 * 359.76047 * 4 3 2 6 6 C 1.50701 * 126.77679 * 180.28844 * 5 4 3 7 7 C 1.35452 * 106.44253 * 0.38018 * 5 4 3 8 8 S 1.76199 * 128.00341 * 179.91119 * 7 5 4 9 9 O 1.42102 * 106.40250 * 156.14082 * 8 7 5 10 10 O 1.42103 * 106.40218 * 23.21944 * 8 7 5 11 11 N 1.65595 * 107.22006 * 269.67994 * 8 7 5 12 12 C 1.39252 * 120.00304 * 64.99948 * 11 8 7 13 13 N 1.32305 * 119.72779 * 359.97438 * 12 11 8 14 14 C 1.32016 * 121.67413 * 179.75301 * 13 12 11 15 15 C 1.38011 * 120.95588 * 0.53503 * 14 13 12 16 16 C 1.38853 * 119.36761 * 359.47629 * 15 14 13 17 17 C 1.38708 * 118.45967 * 0.25127 * 16 15 14 18 18 O 1.36007 * 120.49914 * 179.97438 * 17 16 15 19 19 C 1.42906 * 117.00112 * 0.02562 * 18 17 16 20 20 C 1.52998 * 109.47377 * 179.97438 * 19 18 17 21 21 C 1.50692 * 109.47250 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00142 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00185 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00180 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00054 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47139 * 89.99768 * 25 23 21 27 27 H 1.48501 * 109.47436 * 210.00266 * 25 23 21 28 28 H 1.48507 * 109.46793 * 329.99793 * 25 23 21 29 29 H 1.08996 * 109.47115 * 269.97823 * 1 2 3 30 30 H 1.08999 * 109.46995 * 29.97696 * 1 2 3 31 31 H 1.09000 * 109.46934 * 149.97599 * 1 2 3 32 32 H 1.08993 * 109.47092 * 270.10851 * 6 5 4 33 33 H 1.08995 * 109.47112 * 30.11509 * 6 5 4 34 34 H 1.08997 * 109.46554 * 150.11191 * 6 5 4 35 35 H 0.97003 * 120.00411 * 245.00622 * 11 8 7 36 36 H 1.08000 * 119.52471 * 180.28851 * 14 13 12 37 37 H 1.08002 * 120.31999 * 179.75709 * 15 14 13 38 38 H 1.08004 * 120.77557 * 180.28159 * 16 15 14 39 39 H 1.08996 * 109.46877 * 299.99989 * 19 18 17 40 40 H 1.09004 * 109.46461 * 59.99756 * 19 18 17 41 41 H 1.08997 * 109.46984 * 300.00350 * 20 19 18 42 42 H 1.09002 * 109.47194 * 59.99638 * 20 19 18 43 43 H 0.97003 * 119.99770 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6068 0.0043 6 6 4.9022 -1.3694 0.0114 7 6 2.3540 -1.1320 -0.0005 8 16 1.8923 -2.8324 0.0001 9 8 0.5816 -2.8922 0.5456 10 8 2.9938 -3.5470 0.5437 11 7 1.7626 -3.3057 -1.5814 12 6 2.8901 -3.3213 -2.3984 13 7 4.0625 -2.9564 -1.9055 14 6 5.1568 -2.9612 -2.6440 15 6 5.1163 -3.3396 -3.9706 16 6 3.9073 -3.7306 -4.5306 17 6 2.7744 -3.7213 -3.7303 18 8 1.5688 -4.0958 -4.2362 19 6 1.5359 -4.4915 -5.6091 20 6 0.1061 -4.8756 -5.9950 21 6 0.0713 -5.2922 -7.4428 22 1 0.9783 -5.2842 -8.0290 23 6 -1.1185 -5.6835 -8.0192 24 7 -1.1490 -6.0466 -9.2828 25 14 -2.6876 -5.6966 -7.0056 26 1 -3.3570 -4.3754 -7.1126 27 1 -3.5967 -6.7549 -7.5142 28 1 -2.3562 -5.9700 -5.5840 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 5.2202 -1.5549 -1.0145 33 1 5.6636 -0.7850 0.5278 34 1 4.7628 -2.3201 0.5260 35 1 0.9010 -3.5721 -1.9389 36 1 6.0966 -2.6610 -2.2048 37 1 6.0171 -3.3360 -4.5664 38 1 3.8504 -4.0354 -5.5652 39 1 1.8713 -3.6637 -6.2338 40 1 2.1941 -5.3478 -5.7562 41 1 -0.2290 -5.7034 -5.3702 42 1 -0.5525 -4.0196 -5.8477 43 1 -1.9860 -6.3222 -9.6882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069677364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:46 Heat of formation + Delta-G solvation = -5.182597 kcal Electronic energy + Delta-G solvation = -31551.757659 eV Core-core repulsion = 27114.634583 eV Total energy + Delta-G solvation = -4437.123076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.108 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.29008 -40.91817 -38.27131 -37.44731 -36.11171 -35.59199 -35.21504 -33.84953 -33.49794 -31.95622 -30.92169 -29.28926 -28.99324 -28.07560 -25.77135 -24.17000 -23.53581 -23.19180 -20.85276 -20.78331 -19.86434 -18.80895 -18.42777 -18.05343 -17.87652 -17.55514 -16.65902 -16.43782 -16.09311 -15.91315 -15.48950 -15.22971 -14.46020 -14.36329 -14.33046 -14.23202 -13.77487 -13.71493 -13.51911 -13.05346 -12.98372 -12.72821 -12.61868 -12.49898 -12.39346 -12.26046 -12.23770 -12.16665 -11.81087 -11.62987 -11.34486 -11.30513 -11.04026 -10.68642 -10.43479 -10.25322 -10.00758 -9.88115 -9.78036 -9.59603 -9.48052 -8.73171 -8.05832 -6.24137 -4.26446 0.05093 0.85970 0.98202 1.08376 1.59454 2.51726 2.78040 3.20593 3.23902 3.29541 3.32263 3.37601 3.60347 3.67324 3.94237 3.99339 4.21181 4.29128 4.54254 4.69207 4.79341 4.83347 4.91694 5.09804 5.12376 5.16721 5.26723 5.29165 5.35242 5.44960 5.53927 5.66229 5.69089 5.80779 5.88905 5.93920 5.97963 6.21474 6.29004 6.39907 6.86240 7.06017 7.40612 7.52791 7.59681 7.84838 8.25927 8.75347 9.35449 10.88132 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.012116 B = 0.002917 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.347274 B = 9596.723063 C =10705.415193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.107 3.893 3 N -0.368 5.368 4 O 0.090 5.910 5 C 0.138 3.862 6 C -0.112 4.112 7 C -0.796 4.796 8 S 2.735 3.265 9 O -0.946 6.946 10 O -0.927 6.927 11 N -1.025 6.025 12 C 0.348 3.652 13 N -0.496 5.496 14 C 0.081 3.919 15 C -0.151 4.151 16 C -0.139 4.139 17 C 0.080 3.920 18 O -0.315 6.315 19 C 0.072 3.928 20 C -0.009 4.009 21 C -0.531 4.531 22 H 0.075 0.925 23 C 0.074 3.926 24 N -0.895 5.895 25 Si 0.880 3.120 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.263 1.263 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.442 0.558 36 H 0.167 0.833 37 H 0.141 0.859 38 H 0.150 0.850 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.029 0.971 42 H 0.024 0.976 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.226 9.690 17.993 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 N -0.078 5.078 4 O 0.034 5.966 5 C 0.072 3.928 6 C -0.168 4.168 7 C -0.885 4.885 8 S 2.821 3.179 9 O -0.936 6.936 10 O -0.917 6.917 11 N -0.776 5.776 12 C 0.114 3.886 13 N -0.214 5.214 14 C -0.074 4.074 15 C -0.172 4.172 16 C -0.166 4.166 17 C 0.027 3.973 18 O -0.228 6.228 19 C -0.002 4.002 20 C -0.046 4.046 21 C -0.568 4.568 22 H 0.093 0.907 23 C -0.129 4.129 24 N -0.533 5.533 25 Si 0.707 3.293 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.187 1.187 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.138 0.862 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.281 0.719 36 H 0.184 0.816 37 H 0.159 0.841 38 H 0.167 0.833 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.738 10.782 19.624 25.761 hybrid contribution -1.129 -0.506 -1.337 1.822 sum 11.610 10.277 18.287 23.975 Atomic orbital electron populations 1.20455 0.84881 1.04719 1.04777 1.23141 0.98794 0.86217 0.97363 1.73821 0.88899 1.23523 1.21532 1.84849 1.22229 1.22828 1.66710 1.24679 0.97410 0.83278 0.87444 1.21439 0.88490 0.99922 1.06951 1.32605 1.00294 1.25865 1.29697 1.00913 0.73406 0.72185 0.71443 1.93623 1.38404 1.86651 1.74945 1.93562 1.54167 1.68830 1.75110 1.53290 1.15345 1.78001 1.31013 1.17197 0.86526 0.98721 0.86194 1.67217 0.97531 1.18926 1.37679 1.22148 0.95035 0.99205 0.91000 1.21856 0.98379 1.00668 0.96345 1.21760 0.91801 1.01658 1.01376 1.19481 0.87399 0.98451 0.91987 1.86091 1.25998 1.79547 1.31148 1.23208 1.02406 0.98611 0.75954 1.19598 0.89876 0.97337 0.97795 1.20782 0.96801 1.46177 0.93081 0.90720 1.24928 0.99045 0.94115 0.94816 1.69883 1.27367 1.44286 1.11741 0.86769 0.83113 0.78248 0.81197 1.20013 1.21080 1.18710 0.88809 0.89702 0.89030 0.86153 0.89809 0.85386 0.71896 0.81554 0.84147 0.83257 0.92197 0.92087 0.95234 0.95742 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.78 36.01 0.35 -0.58 16 2 C 0.11 1.35 7.32 -82.10 -0.60 0.75 16 3 N -0.37 -4.90 12.07 33.42 0.40 -4.50 16 4 O 0.09 1.09 11.20 17.17 0.19 1.28 16 5 C 0.14 1.51 7.20 -35.30 -0.25 1.25 16 6 C -0.11 -0.87 8.51 36.01 0.31 -0.56 16 7 C -0.80 -9.66 6.06 -39.38 -0.24 -9.90 16 8 S 2.74 34.08 5.49 -107.50 -0.59 33.49 16 9 O -0.95 -13.13 16.41 -57.17 -0.94 -14.07 16 10 O -0.93 -12.64 14.51 -57.17 -0.83 -13.46 16 11 N -1.02 -12.64 5.85 31.24 0.18 -12.45 16 12 C 0.35 4.50 7.35 -154.70 -1.14 3.36 16 13 N -0.50 -5.49 5.14 -12.28 -0.06 -5.56 16 14 C 0.08 0.68 9.81 -17.56 -0.17 0.51 16 15 C -0.15 -1.31 10.10 -39.44 -0.40 -1.71 16 16 C -0.14 -1.61 9.14 -39.18 -0.36 -1.96 16 17 C 0.08 1.11 6.72 -38.92 -0.26 0.84 16 18 O -0.32 -5.08 9.38 -19.76 -0.19 -5.27 16 19 C 0.07 1.28 4.70 37.16 0.17 1.45 16 20 C -0.01 -0.19 4.41 -27.89 -0.12 -0.31 16 21 C -0.53 -14.02 9.66 -34.45 -0.33 -14.35 16 22 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 23 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 24 N -0.90 -26.19 13.96 55.43 0.77 -25.41 16 25 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.90 7.26 -51.93 -0.38 0.53 16 32 H 0.12 0.82 3.95 -51.93 -0.21 0.61 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.13 1.14 5.88 -51.93 -0.31 0.83 16 35 H 0.44 5.04 8.17 -34.47 -0.28 4.76 16 36 H 0.17 0.74 7.20 -52.49 -0.38 0.37 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.15 1.64 6.44 -52.48 -0.34 1.30 16 39 H 0.06 1.01 7.70 -51.93 -0.40 0.61 16 40 H 0.06 1.03 7.70 -51.93 -0.40 0.63 16 41 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 42 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -33.57 366.30 -8.07 -41.64 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.73 Total: 2.16 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -3.14 Total: -19.28 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 1.30 Total: -47.92 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.76 Total: -31.53 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Atomic # 16 Polarization: 34.08 SS G_CDS: -0.59 Total: 33.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.57 -8.07 -41.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069677364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.459 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds